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Gene Regulation and Expression

  1. Ubiquitin-C-terminal hydrolases cleave isopeptide and peptide-linked ubiquitin from structured proteins but do not edit ubiquitin homopolymers

    Bett, J. S., Ritorto, M. S., Ewan, R., Jaffray, E. G., Virdee, S., Chin, J. W., Knebel, A., Kurz, T., Trost, M., Tatham, M. H. & Hay, R. T. 15 Mar 2015 In : Biochemical Journal. 466, 3, p. 489-498 10 p.

    Research output: Contribution to journalArticle

  2. Erratum: dynamic SUMO modification regulates mitotic chromosome assembly and cell cycle progression in Caenorhabditis elegans

    Pelisch, F., Sonneville, R., Pourkarimi, E., Agostinho, A., Blow, J. J., Gartner, A. & Hay, R. T. 12 Feb 2015 In : Nature Communications. 6, 6352

    Research output: Contribution to journalArticle

  3. HIF-1α restricts NF-κB-dependent gene expression to control innate immunity signals

    Bandarra, D., Biddlestone, J., Mudie, S., Müller, H. -A. J. & Rocha, S. Feb 2015 In : Disease Models & Mechanisms. 8, 2, p. 169-181 13 p.

    Research output: Contribution to journalArticle

  4. Proteomic analysis of the response to cell cycle arrests in human myeloid leukemia cells

    Ly, T., Endo, A. & Lamond, A. I. 2 Jan 2015 In : eLife. 2015, 4, 15 p.e04534

    Research output: Contribution to journalArticle

  5. PITX1, a specificity determinant in the HIF-1α-mediated transcriptional response to hypoxia

    Mudie, S., Bandarra, D., Batie, M., Biddlestone, J., Moniz, S., Ortmann, B., Shmakova, A. & Rocha, S. 15 Dec 2014 In : Cell Cycle. 13, 24, p. 3878-3891 14 p.

    Research output: Contribution to journalArticle

  6. Dynamic SUMO modification regulates mitotic chromosome assembly and cell cycle progression in Caenorhabditis elegans

    Pelisch, F., Sonneville, R., Pourkarimi, E., Agostinho, A., Blow, J. J., Gartner, A. & Hay, R. T. 5 Dec 2014 In : Nature Communications. 5, 12 p.5485

    Research output: Contribution to journalArticle

  7. Tetraspanin (TSP-17) Protects Dopaminergic Neurons against 6-OHDA-Induced Neurodegeneration in C. elegans

    Masoudi, N., Ibanez-Cruceyra, P., Offenburger, S-L., Holmes, A. & Gartner, A. 4 Dec 2014 In : PLoS Genetics. 10, 12, 15 p.e1004767

    Research output: Contribution to journalArticle

  8. FMDV replicons encoding green fluorescent protein are replication competent

    Tulloch, F., Pathania, U., Luke, G. A., Nicholson, J., Stonehouse, N. J., Rowlands, D. J., Jackson, T., Tuthill, T., Haas, J., Lamond, A. I. & Ryan, M. D. 1 Dec 2014 In : Journal of Virological Methods. 209, p. 35-40 6 p.

    Research output: Contribution to journalArticle

  9. Cezanne (OTUD7B) regulates HIF-1α homeostasis in a proteasome-independent manner

    Bremm, A., Moniz, S., Mader, J., Rocha, S. & Komander, D. Dec 2014 In : EMBO Reports. 15, 12, p. 1268-1277 10 p.

    Research output: Contribution to journalArticle

  10. GEN1 from a thermophilic fungus is functionally closely similar to non-eukaryotic junction-resolving enzymes

    Freeman, A. D. J., Liu, Y., Déclais, A-C., Gartner, A. & Lilley, D. M. J. Dec 2014 In : Journal of Molecular Biology. 426, 24, p. 3946-3959 14 p.

    Research output: Contribution to journalArticle

  11. Modelling multi-protein complexes using PELDOR distance measurements for rigid body minimisation experiments using XPLOR-NIH

    Hammond, C. M., Owen-Hughes, T. & Norman, D. G. Dec 2014 In : Methods (San Diego, Calif.). 70, 2-3, p. 139-153 15 p.

    Research output: Contribution to journalArticle

  12. Proteomic and 3D structure analyses highlight the C/D box snoRNP assembly mechanism and its control

    Bizarro, J., Charron, C., Boulon, S., Westman, B., Pradet-Balade, B., Vandermoere, F., Chagot, M-E., Hallais, M., Ahmad, Y., Leonhardt, H., Lamond, A., Manival, X., Branlant, C., Charpentier, B., Verheggen, C. & Bertrand, E. 24 Nov 2014 In : Journal of Cell Biology. 207, 4, p. 463-480 18 p.

    Research output: Contribution to journalArticle

  13. Having a direct look: analysis of DNA damage and repair mechanisms by next generation sequencing

    Meier, B. & Gartner, A. 15 Nov 2014 In : Experimental Cell Research. 329, 1, p. 35-41 7 p.

    Research output: Contribution to journalArticle

  14. Piezo1 integration of vascular architecture with physiological force

    Li, J. , Hou, B. , Tumova, S. , Muraki, K. , Bruns, A. , Ludlow, M. J. , Sedo, A. , Hyman, A. J. , McKeown, L. , Young, R. S. , Yuldasheva, N. Y. , Majeed, Y. , Wilson, L. A. , Rode, B. , Bailey, M. A. , Kim, H. R. , Fu, Z. , Carter, D. A. L. , Bilton, J. , Imrie, H. & 8 others Ajuh, P., Dear, T. N., Cubbon, R. M., Kearney, M. T., Prasad, K. R., Evans, P. C., Ainscough, J. F. X. & Beech, D. J. 13 Nov 2014 In : Nature. 515, 7526, p. 279-82 4 p.

    Research output: Contribution to journalArticle

  15. Dss1 is a 26S proteasome ubiquitin receptor

    Paraskevopoulos, K., Kriegenburg, F., Tatham, M. H., Rösner, H. I., Medina, B., Larsen, I. B., Brandstrup, R., Hardwick, K. G., Hay, R. T., Kragelund, B. B., Hartmann-Petersen, R. & Gordon, C. 6 Nov 2014 In : Molecular Cell. 56, 3, p. 453-461 9 p.

    Research output: Contribution to journalArticle

  16. Monitoring Keap1-Nrf2 interactions in single live cells

    Baird, L., Swift, S., Llères, D. & Dinkova-Kostova, A. T. 1 Nov 2014 In : Biotechnology Advances. 32, 6, p. 1133-1144 12 p.

    Research output: Contribution to journalArticle

  17. The spatial effect of protein deuteration on nitroxide spin-label relaxation: implications for EPR distance measurement

    El Mkami, H., Ward, R., Bowman, A., Owen-Hughes, T. & Norman, D. G. Nov 2014 In : Journal of Magnetic Resonance . 248, p. 36-41 6 p.

    Research output: Contribution to journalArticle

  18. Prohibitin is required for transcriptional repression by the WT1-BASP1 complex

    Toska, E., Shandilya, J., Goodfellow, S. J., Medler, K. F. & Roberts, S. G. E. 23 Oct 2014 In : Oncogene. 33, 43, p. 5100-5108 9 p.

    Research output: Contribution to journalArticle

  19. Stochasticity in the symmetric division of plant cells: when the exceptions are the rule

    Besson, S. & Dumais, J. 9 Oct 2014 In : Frontiers in Plant Science. 5, October, p. 538

    Research output: Contribution to journalArticle

  20. A 3D cellular context for the macromolecular world

    Patwardhan, A. , Ashton, A. , Brandt, R. , Butcher, S. , Carzaniga, R. , Chiu, W. , Collinson, L. , Doux, P. , Duke, E. , Ellisman, M. H. , Franken, E. , Grünewald, K. , Heriche, J-K. , Koster, A. , Kühlbrandt, W. , Lagerstedt, I. , Larabell, C. , Lawson, C. L. , Saibil, H. R. , Sanz-García, E. & 4 others Subramaniam, S., Verkade, P., Swedlow, J. R. & Kleywegt, G. J. Oct 2014 In : Nature Structural & Molecular Biology. 21, 10, p. 841-845 5 p.

    Research output: Contribution to journalComment/debate

  21. Farmers without borders-genetic structuring in century old barley (Hordeum vulgare)

    Forsberg, N. E. G., Russell, J., Macaulay, M., Leino, M. W. & Hagenblad, J. 17 Sep 2014 In : Heredity.

    Research output: Contribution to journalArticle

  22. Chromatin and oxygen sensing in the context of JmjC histone demethylases

    Shmakova, A., Batie, M., Druker, J. & Rocha, S. 15 Sep 2014 In : Biochemical Journal. 462, 3, p. 385-395 11 p.

    Research output: Contribution to journalArticle

  23. Buffered Qualitative Stability explains the robustness and evolvability of transcriptional networks

    Albergante, L., Blow, J. J. & Newman, T. J. 2 Sep 2014 In : eLife. 3, 28 p.e02863

    Research output: Contribution to journalArticle

  24. Sumoylation controls host anti-bacterial response to the gut invasive pathogen Shigella flexneri

    Fritah, S., Lhocine, N., Golebiowski, F., Mounier, J., Andrieux, A., Jouvion, G., Hay, R. T., Sansonetti, P. & Dejean, A. Sep 2014 In : EMBO Reports. 15, 9, p. 965-972 8 p.

    Research output: Contribution to journalArticle

  25. Family-wide analysis of poly(ADP-ribose) polymerase activity

    Vyas, S., Matic, I., Uchima, L., Rood, J., Zaja, R., Hay, R. T., Ahel, I. & Chang, P. 21 Jul 2014 In : Nature Communications. 5, 13 p.4426

    Research output: Contribution to journalArticle

  26. The contribution of dormant origins to genome stability: from cell biology to human genetics

    Alver, R. C., Chadha, G. S. & Blow, J. J. Jul 2014 In : DNA Repair. 19, p. 182-189 8 p.

    Research output: Contribution to journalArticle

  27. Structural insight into SUMO chain recognition and manipulation by the ubiquitin ligase RNF4

    Xu, Y., Plechanovová, A., Simpson, P., Marchant, J., Leidecker, O., Kraatz, S., Hay, R. T. & Matthews, S. J. 27 Jun 2014 In : Nature Communications. 5, 4217

    Research output: Contribution to journalArticle

  28. A dynamic microtubule cytoskeleton directs medial actomyosin function during tube formation

    Booth, A. J. R., Blanchard, G. B., Adams, R. J. & Röper, K. 9 Jun 2014 In : Developmental Cell. 29, 5, p. 562-576 15 p.

    Research output: Contribution to journalArticle

  29. A conserved and essential basic region mediates tRNA binding to the Elp1 subunit of the Saccharomyces cerevisiae Elongator complex

    Di Santo, R., Bandau, S. & Stark, M. J. R. Jun 2014 In : Molecular Microbiology. 92, 6, p. 1227-1242 16 p.

    Research output: Contribution to journalArticle

  30. Sp100 isoform-specific regulation of human adenovirus 5 gene expression

    Berscheminski, J., Wimmer, P., Brun, J., Ip, W. H., Groitl, P., Horlacher, T., Jaffray, E., Hay, R. T., Dobner, T. & Schreiner, S. Jun 2014 In : Journal of Virology. 88, 11, p. 6076-6092 17 p.

    Research output: Contribution to journalArticle

  31. The essential roles of cytidine diphosphate-diacylglycerol synthase in bloodstream form Trypanosoma brucei

    Lilley, A. C., Major, L., Young, S., Stark, M. J. R. & Smith, T. K. May 2014 In : Molecular Microbiology. 92, 3, p. 453-470 18 p.

    Research output: Contribution to journalArticle

  32. Proteome-wide identification of SUMO2 modification sites

    Tammsalu, T., Matic, I., Jaffray, E. G., Ibrahim, A. F. M., Tatham, M. H. & Hay, R. T. 29 Apr 2014 In : Science Signaling. 7, 323, 10 p.rs2

    Research output: Contribution to journalArticle

  33. E3 ubiquitin ligase HOIP attenuates apoptotic cell death induced by cisplatin

    MacKay, C., Carroll, E., Ibrahim, A. F. M., Garg, A., Inman, G. J., Hay, R. T. & Alpi, A. F. 15 Apr 2014 In : Cancer Research. 74, 8, p. 2246-2257 12 p.

    Research output: Contribution to journalArticle

  34. A perspective on proteomics in cell biology

    Ahmad, Y. & Lamond, A. I. Apr 2014 In : Trends in Cell Biology. 24, 4, p. 257-264 8 p.

    Research output: Contribution to journalScientific review

  35. Acetylation of histone H3 at lysine 64 regulates nucleosome dynamics and facilitates transcription

    Di Cerbo, V., Mohn, F., Ryan, D. P., Montellier, E., Kacem, S., Tropberger, P., Kallis, E., Holzner, M., Hoerner, L., Feldmann, A., Richter, F. M., Bannister, A. J., Mittler, G., Michaelis, J., Khochbin, S., Feil, R., Schuebeler, D., Owen-Hughes, T., Daujat, S. & Schneider, R. 25 Mar 2014 In : eLife. 3, e01632

    Research output: Contribution to journalArticle

  36. NDK-1, the homolog of NM23-H1/H2 regulates cell migration and apoptotic engulfment in C. elegans

    Fancsalszky, L., Monostori, E., Farkas, Z., Pourkarimi, E., Masoudi, N., Hargitai, B., Bosnar, M. H., Deželjin, M., Zsákai, A., Vellai, T., Mehta, A. & Takács-Vellai, K. 21 Mar 2014 In : PLoS ONE. 9, 3, 12 p.e92687

    Research output: Contribution to journalArticle

  37. SUMO chain-induced dimerization activates RNF4

    Rojas-Fernandez, A., Plechanovová, A., Hattersley, N., Jaffray, E., Tatham, M. H. & Hay, R. T. 20 Mar 2014 In : Molecular Cell. 53, 6, p. 880-92 13 p.

    Research output: Contribution to journalArticle

  38. Near real-time processing of proteomics data using Hadoop.

    Hillman, C., Ahmad, Y., Whitehorn, M. & Cobley, A. 14 Mar 2014 In : Big Data. 2, 1, p. 44-49 5 p.

    Research output: Contribution to journalArticle

  39. A role for the Cajal-body-associated SUMO isopeptidase USPL1 in snRNA transcription mediated by RNA polymerase II

    Hutten, S., Chachami, G., Winter, U., Melchior, F. & Lamond, A. I. 1 Mar 2014 In : Journal of Cell Science. 127, 5, p. 1065-1078 14 p.

    Research output: Contribution to journalArticle

  40. Phosphorylation of Sli15 by Ipl1 is important for proper CPC localization and chromosome stability in Saccharomyces cerevisiae

    Makrantoni, V., Corbishley, S., Rachidi, N., Morrice, N. A., Robinson, D. A. & Stark, M. J. R. 18 Feb 2014 In : PLoS ONE. 9, 2, 15 p.e89399

    Research output: Contribution to journalArticle

  41. PML isoforms in response to arsenic: high-resolution analysis of PML body structure and degradation

    Hands, K. J., Cuchet-Lourenco, D., Everett, R. D. & Hay, R. T. 15 Jan 2014 In : Journal of Cell Science. 127, 2, p. 365-375 11 p.

    Research output: Contribution to journalArticle

  42. Grow₂: The HIF system, energy homeostasis and the cell cycle

    Moniz, S., Biddlestone, J. & Rocha, S. 10 Jan 2014 In : Histology and Histopathology.

    Research output: Contribution to journalArticle

  43. Xenopus Cdc7 executes its essential function early in S phase and is counteracted by checkpoint-regulated protein phosphatase 1

    Poh, W. T., Chadha, G. S., Gillespie, P. J., Kaldis, P. & Blow, J. J. 8 Jan 2014 In : Open Biology. 4, January, 130138

    Research output: Contribution to journalArticle

  44. Phosphorylated DegU manipulates cell fate differentiation in the Bacillus subtilis biofilm

    Marlow, V. L., Porter, M., Hobley, L., Kiley, T. B., Swedlow, J. R., Davidson, F. A. & Stanley-Wall, N. R. Jan 2014 In : Journal of Bacteriology. 196, 1, p. 16-27 10 p.

    Research output: Contribution to journalArticle

  45. The prevalence and origin of exoprotease-producing cells in the Bacillus subtilis biofilm

    Marlow, V. L., Cianfanelli, F. R., Porter, M., Cairns, L. S., Dale, J. K. & Stanley-Wall, N. R. Jan 2014 In : Microbiology-SGM. 160, 1, p. 56-66 11 p.

    Research output: Contribution to journalArticle

  46. Analysis of Global RNA Synthesis at the Single Cell Level following Hypoxia

    Biddlestone, J., Druker, J., Shmakova, A., Ferguson, G., Swedlow, J. R. & Rocha, S. 2014 In : JoVE: Journal of Visualized Experiments. 87

    Research output: Contribution to journalArticle

  47. ANIA: ANnotation and Integrated Analysis of the 14-3-3 interactome

    Tinti, M., Madeira, F., Murugesan, G., Hoxhaj, G., Toth, R. & Mackintosh, C. 2014 In : Database: the Journal of Biological Databases and Curation. 2014, 15 p.bat085

    Research output: Contribution to journalArticle

  48. Biochemical analysis of TssK, a core component of the bacterial Type VI secretion system, reveals distinct oligomeric states of TssK and identifies a TssK-TssFG sub-complex

    English, G., Byron, O., Cianfanelli, F. R., Prescott, A. R. & Coulthurst, S. J. 2014 In : Biochemical Journal. 461, 2, p. 291-304 14 p.

    Research output: Contribution to journalArticle

  49. C. elegans whole genome sequencing reveals mutational signatures related to carcinogens and DNA repair deficiency.

    Meier, B., Cooke, S. L., Weiss, J., Bailly, A. P., Alexandrov, L. B., Marshall, J., Raine, K., Maddison, M., Anderson, E., Stratton, M. R., Gartner, A. & Campbell, P. J. 2014 In : Genome Research. 24, p. 1624-1636 14 p.

    Research output: Contribution to journalArticle

  50. Cell cycle progression in response to oxygen levels

    Ortmann, B., Druker, J. & Rocha, S. 2014 In : Cellular and Molecular Life Sciences. 71, 18, p. 3569-3582 14 p.

    Research output: Contribution to journalArticle

  51. Hypoxia activates IKK-NF-κB and the immune response in Drosophila melanogaster

    Bandarra, D., Biddlestone, J., Mudie, S., Muller, H. A. & Rocha, S. 2014 In : Bioscience Reports. 34, 4, p. 429-440 12 p.e00127

    Research output: Contribution to journalArticle

  52. Identification of small molecule inhibitors of pre-mRNA splicing

    Pawellek, A., McElroy, S., Samatov, T., Mitchell, L., Woodland, A., Ryder, U., Gray, D., Lührmann, R. & Lamond, A. I. 2014 In : Journal of Biological Chemistry. 29 p.

    Research output: Contribution to journalArticle

  53. Proteomic Selection of Immunodiagnostic Antigens for Trypanosoma congolense

    Fleming, J. R., Sastry, L., Crozier, T. W. M., Napier, G. B., Sullivan, L. & Ferguson, M. A. J. 2014 In : PLoS Neglected Tropical Diseases. 8, 6, e2936

    Research output: Contribution to journalArticle

  54. Regulatory and functional connection of microphthalmia-associated transcription factor and anti-metastatic pigment epithelium derived factor in melanoma

    Fernández-Barral, A., Orgaz, J. L., Baquero, P., Ali, Z., Moreno, A., Tiana, M., Gómez, V., Riveiro-Falkenbach, E., Cañadas, C., Zazo, S., Bertolotto, C., Davidson, I., Rodríguez-Peralto, J. L., Palmero, I., Rojo, F., Jensen, L. D., Del Peso, L. & Jiménez, B. 2014 In : Neoplasia. 16, 6, p. 529-542 14 p.

    Research output: Contribution to journalArticle

  55. siRNA screening to identify ubiquitin and ubiquitin-like system regulators of biological pathways in cultured mammalian cells

    Bett, J. S., Ibrahim, A. F. M., Garg, A. K., Rocha, S. & Hay, R. T. 2014 In : JoVE: Journal of Visualized Experiments. 87, e51572

    Research output: Contribution to journalArticle

  56. Tetramerization-defects of p53 result in aberrant ubiquitylation and transcriptional activity

    Lang, V., Pallara, C., Zabala, A., Lobato-Gil, S., Lopitz-Otsoa, F., Farrás, R., Hjerpe, R., Torres-Ramos, M., Zabaleta, L., Blattner, C., Hay, R. T., Barrio, R., Carracedo, A., Fernandez-Recio, J., Rodríguez, M. S. & Aillet, F. 2014 In : Molecular Oncology. 8, 5, p. 1026-1042 17 p.

    Research output: Contribution to journalArticle

  57. The double loop mattress suture

    Biddlestone, J., Samuel, M., Creagh, T. & Ahmad, T. 2014 In : Wound Repair and Regeneration. 22, 3, p. 415-423 9 p.

    Research output: Contribution to journalArticle

  58. The histone chaperones Vps75 and Nap1 form ring-like, tetrameric structures in solution

    Bowman, A., Hammond, C. M., Stirling, A., Ward, R., Shang, W., El-Mkami, H., Robinson, D. A., Svergun, D. I., Norman, D. G. & Owen-Hughes, T. 2014 In : Nucleic Acids Research. 42, 9, p. 6038-6051 13 p.

    Research output: Contribution to journalArticle

  59. Characterization of Native Protein Complexes and Protein Isoform Variation Using Size-fractionation-based Quantitative Proteomics

    Kirkwood, K. J., Ahmad, Y., Larance, M. & Lamond, A. I. 1 Dec 2013 In : Molecular & Cellular Proteomics. 12, 12, p. 3851-3873 23 p.

    Research output: Contribution to journalArticle

  60. Deregulated origin licensing leads to chromosomal breaks by rereplication of a gapped DNA template

    Neelsen, K. J., Zanini, I. M. Y., Mijic, S., Herrador, R., Zellweger, R., Chaudhuri, A. R., Creavin, K., Blow, J. J. & Lopes, M. 1 Dec 2013 In : Genes and Development. 27, 23, p. 2537-2542 6 p.

    Research output: Contribution to journalArticle

  61. Three wise centromere functions: see no error, hear no break, speak no delay

    Tanaka, T. U., Clayton, L. & Natsume, T. Dec 2013 In : EMBO Reports. 14, 12, p. 1073-1083 11 p.

    Research output: Contribution to journalScientific review

  62. Stress Response: Anything that Doesn't Kill You Makes You Stronger

    Gartner, A. & Akay, A. 18 Nov 2013 In : Current Biology. 23, 22, p. R1012-R1014 3 p.

    Research output: Contribution to journalArticle

  63. A comparison of in vitro nucleosome positioning mapped with chicken, frog and a variety of yeast core histones

    Allan, J., Fraser, R. M., Owen-Hughes, T., Docherty, K. & Singh, V. 15 Nov 2013 In : Journal of Molecular Biology. 425, 22, p. 4206-4222 17 p.

    Research output: Contribution to journalArticle

  64. Tmem79/Matt is the matted mouse gene and is a predisposing gene for atopic dermatitis in human subjects

    Brown, S. J. & 33 others Saunders, S. P., Goh, C. S. M., Palmer, C. N. A., Porter, R. M., Cole, C., Campbell, L. E., Gierlinski, M., Barton, G. J., Schneider, G., Balmain, A., Prescott, A. R., Weidinger, S., Baurecht, H., Kabesch, M., Gieger, C., Lee, Y-A., Tavendale, R., Mukhopadhyay, S., Turner, S. W., Madhok, V. B., Sullivan, F. M., Relton, C., Burn, J., Meggitt, S., Smith, C. H., Allen, M. A., Barker, J. N. W. N., Reynolds, N. J., Cordell, H. J., Irvine, A. D., McLean, W. H. I., Sandilands, A. & Fallon, P. G. Nov 2013 In : Journal of Allergy and Clinical Immunology. 132, 5, p. 1121-1129 9 p.

    Research output: Contribution to journalArticle

  65. Replisome stall events have shaped the distribution of replication origins in the genomes of yeasts

    Newman, T. J., Mamun, M. A., Nieduszynski, C. A. & Blow, J. J. Nov 2013 In : Nucleic Acids Research. 41, 21, p. 9705-9718 14 p.

    Research output: Contribution to journalArticle

  66. RNA-binding protein GLD-1/quaking genetically interacts with the mir-35 and the let-7 miRNA pathways in Caenorhabditis elegans

    Akay, A., Craig, A., Lehrbach, N., Larance, M., Pourkarimi, E., Wright, J. E., Lamond, A., Miska, E. & Gartner, A. Nov 2013 In : Open Biology. 3, 130151

    Research output: Contribution to journalArticle

  67. The Geminin and Idas coiled coils preferentially form a heterodimer that inhibits Geminin function in DNA replication licensing

    Caillat, C., Pefani, D-E., Gillespie, P. J., Taraviras, S., Blow, J. J., Lygerou, Z. & Perrakis, A. Nov 2013 In : Journal of Biological Chemistry. 288, 44, p. 31624-31634 11 p.

    Research output: Contribution to journalArticle

  68. Structural biology: Pivotal findings for a transcription machine

    Zomerdijk, J. 31 Oct 2013 In : Nature. 502, 7473, p. 629-630 2 p.

    Research output: Contribution to journalArticle

  69. Bod1 regulates protein phosphatase 2A at mitotic kinetochores

    Porter, I., Schleicher, K., Porter, M. & Swedlow, J. 25 Oct 2013 In : Nature Communications. 4, 2677

    Research output: Contribution to journalArticle

  70. HIF-independent role of prolyl hydroxylases in the cellular response to amino acids

    Durán, R. V., Mackenzie, E. D., Boulahbel, H., Frezza, C., Heiserich, L., Tardito, S., Bussolati, O., Rocha, S., Hall, M. N. & Gottlieb, E. 19 Sep 2013 In : Oncogene. 32, 38, p. 4549-4556 8 p.

    Research output: Contribution to journalArticle

  71. PHD1 links cell-cycle progression to oxygen sensing through hydroxylation of the centrosomal protein Cep192

    Moser, S. C., Bensaddek, D., Ortmann, B., Maure, J-F., Mudie, S., Blow, J. J., Lamond, A. I., Swedlow, J. R. & Rocha, S. 26 Aug 2013 In : Developmental Cell. 26, 4, p. 381-392 12 p.

    Research output: Contribution to journalArticle

  72. Plant SILAC: stable-isotope labelling with amino acids of Arabidopsis seedlings for quantitative proteomics

    Lewandowska, D., ten Have, S., Hodge, K., Tillemans, V., Lamond, A. I. & Brown, J. W. S. 20 Aug 2013 In : PLoS ONE. 8, 8, e72207

    Research output: Contribution to journalArticle

  73. Locus-specific proteomics by TChP: targeted chromatin purification

    Pourfarzad, F., Aghajanirefah, A., de Boer, E., Ten Have, S., Bryn van Dijk, T., Kheradmandkia, S., Stadhouders, R., Thongjuea, S., Soler, E., Gillemans, N., von Lindern, M., Demmers, J., Philipsen, S. & Grosveld, F. 15 Aug 2013 In : Cell Reports. 4, 3, p. 589-600 12 p.

    Research output: Contribution to journalArticle

  74. The NM23-H1/H2 homolog NDK-1 is required for full activation of Ras signaling in C. elegans

    Masoudi, N., Fancsalszky, L., Pourkarimi, E., Vellai, T., Alexa, A., Reményi, A., Gartner, A., Mehta, A. & Takács-Vellai, K. 15 Aug 2013 In : Development. 140, 16, p. 3486-3495 10 p.

    Research output: Contribution to journalArticle

  75. BslA is a self-assembling bacterial hydrophobin that coats the Bacillus subtilis biofilm

    Hobley, L., Ostrowski, A., Rao, F. V., Bromley, K. M., Porter, M., Prescott, A. R., Macphee, C. E., van Aalten, D. M. F. & Stanley-Wall, N. R. 13 Aug 2013 In : Proceedings of the National Academy of Sciences of the United States of America. 110, 33, p. 13600-13605 6 p.

    Research output: Contribution to journalArticle

  76. Cleaning up the masses: Exclusion lists to reduce contamination with HPLC-MS/MS

    Hodge, K., Ten Have, S., Hutton, L. & Lamond, A. I. 2 Aug 2013 In : Journal of Proteomics. 88, p. 92-103 12 p.

    Research output: Contribution to journalArticle

  77. Clinical proteomics stretch goals: EuPA 2012 roundtable report

    O'Neil, S. E., Palviainen, M. J., Ten Have, S., Filiou, M., Gonzalez, A., Hodge, K., Surinova, S., Penque, D. & Baker, M. S. 2 Aug 2013 In : Journal of Proteomics. 88, p. 37-40 4 p.

    Research output: Contribution to journalArticle

  78. PROTEINCHALLENGE: Crowd sourcing in proteomics analysis and software development

    Martin, S. F., Falkenberg, H., Dyrlund, T. F., Khoudoli, G. A., Mageean, C. J. & Linding, R. 2 Aug 2013 In : Journal of Proteomics. 88, p. 41-46 6 p.

    Research output: Contribution to journalArticle

  79. FMN2 is a novel regulator of the cyclin-dependent kinase inhibitor p21

    Yamada, K., Ono, M., Bensaddek, D., Lamond, A. I. & Rocha, S. 1 Aug 2013 In : Cell cycle (Georgetown, Tex.). 12, 15, p. 2348-2354 7 p.

    Research output: Contribution to journalArticle

  80. Combinatorial regulation of meiotic holliday junction resolution in C. elegans by HIM-6 (BLM) helicase, SLX-4, and the SLX-1, MUS-81 and XPF-1 nucleases

    Agostinho, A., Meier, B., Sonneville, R., Jagut, M., Woglar, A., Blow, J., Jantsch, V. & Gartner, A. 18 Jul 2013 In : PLoS Genetics. 9, 7, e1003591

    Research output: Contribution to journalArticle

  81. Kinetochores coordinate pericentromeric cohesion and early DNA replication by Cdc7-Dbf4 kinase recruitment

    Natsume, T., Müller, C. A., Katou, Y., Retkute, R., Gierlinski, M., Araki, H., Blow, J. J., Shirahige, K., Nieduszynski, C. A. & Tanaka, T. U. 6 Jun 2013 In : Molecular Cell. 50, 5, p. 661-674 14 p.

    Research output: Contribution to journalArticle

  82. Insights into Diphthamide, key Diphtheria Toxin effector

    Abdel-Fattah, W., Scheidt, V., Uthman, S., Stark, M. J. R. & Schaffrath, R. 3 May 2013 In : Toxins. 5, 5, p. 958-968 11 p.

    Research output: Contribution to journalArticle

  83. Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease

    Sharifi, R. , Morra, R. , Appel, C. D. , Tallis, M. , Chioza, B. , Jankevicius, G. , Simpson, M. A. , Matic, I. , Ozkan, E. , Golia, B. , Schellenberg, M. J. , Weston, R. , Williams, J. G. , Rossi, M. N. , Galehdari, H. , Krahn, J. , Wan, A. , Trembath, R. C. , Crosby, A. H. , Ahel, D. & 5 others Hay, R., Ladurner, A. G., Timinszky, G., Williams, R. S. & Ahel, I. 2 May 2013 In : EMBO Journal. 32, 9, p. 1225-1237 13 p.

    Research output: Contribution to journalArticle

  84. miR-132/212 knockout mice reveal roles for these miRNAs in regulating cortical synaptic transmission and plasticity

    Remenyi, J., van den Bosch, M. W. M., Palygin, O., Mistry, R. B., McKenzie, C., Macdonald, A., Hutvagner, G., Arthur, J. S. C., Frenguelli, B. G. & Pankratov, Y. 26 Apr 2013 In : PLoS ONE. 8, 4, 14 p.e62509

    Research output: Contribution to journalArticle

  85. Analysis of human protein replacement stable cell lines established using snoMEN-PR vector

    Ono, M., Yamada, K., Endo, A., Avolio, F. & Lamond, A. I. 25 Apr 2013 In : PLoS ONE. 8, 4, 12 p.e62305

    Research output: Contribution to journalArticle

  86. Mcm8 and Mcm9 form a dimeric complex in Xenopus laevis egg extract that is not essential for DNA replication initiation

    Gambus, A. & Blow, J. J. 15 Apr 2013 In : Cell Cycle. 12, 8, p. 1225-1232 8 p.

    Research output: Contribution to journalArticle

  87. The P-body component USP52/PAN2 is a novel regulator of HIF1A mRNA stability

    Bett, J. S., Ibrahim, A. F. M., Garg, A. K., Kelly, V., Pedrioli, P., Rocha, S. & Hay, R. T. 15 Apr 2013 In : Biochemical Journal. 451, 2, p. 185-194 10 p.BJ20130026

    Research output: Contribution to journalArticle

  88. Correlative imaging of fluorescent proteins in resin-embedded plant material

    Bell, K., Mitchell, S., Paultre, D., Posch, M. & Oparka, K. Apr 2013 In : Plant Physiology. 161, 4, p. 1595-1603 9 p.

    Research output: Contribution to journalArticle

  89. Decoding the SUMO signal

    Hay, R. T. Apr 2013 In : Biochemical Society Transactions. 41, 2, p. 463-473 11 p.

    Research output: Contribution to journalArticle

  90. Degradation characteristics of the major PML isoforms in response to arsenic

    Hands, K. J., Cuchet-Lourenco, D., Everett, R. D. & Hay, R. T. Apr 2013 In : British Journal of Haematology. 161, Suppl. 1, p. 17 1 p.35

    Research output: Contribution to journalMeeting abstract

  91. Small RNAs derived from the 5' end of tRNA can inhibit protein translation in human cells

    Sobala, A. & Hutvagner, G. Apr 2013 In : RNA Biology. 10, 4, p. 553-563 11 p.

    Research output: Contribution to journalArticle

  92. Topoisomerase IIα promotes activation of RNA polymerase i transcription by facilitating pre-initiation complex formation

    Ray, S., Panova, T., Miller, G., Volkov, A., Porter, A. C. G., Russell, J., Panov, K. I. & Zomerdijk, J. C. B. M. 19 Mar 2013 In : Nature Communications. 4, 1598

    Research output: Contribution to journalArticle

  93. Global subcellular characterization of protein degradation using quantitative proteomics

    Larance, M., Ahmad, Y., Kirkwood, K. J., Ly, T. & Lamond, A. I. Mar 2013 In : Molecular & Cellular Proteomics. 12, 3, p. 638-650 13 p.

    Research output: Contribution to journalArticle

  94. Identification and functional characterization of FMN2: a regulator of the cyclin-dependent kinase Inhibitor p21

    Yamada, K., Ono, M., Perkins, N. D., Rocha, S. & Lamond, A. I. Mar 2013 In : Molecular Cell. 49, 5, p. 922-933 12 p.

    Research output: Contribution to journalArticle

  95. DNA-binding regulates site-specific ubiquitination of IRF-1

    Landré, V., Pion, E., Narayan, V., Xirodimas, D. P. & Ball, K. L. 1 Feb 2013 In : Biochemical Journal. 449, 3, p. 707-717 11 p.

    Research output: Contribution to journalArticle

  96. Web-based visualisation and analysis of 3D electron-microscopy data from EMDB and PDB

    Lagerstedt, I., Moore, W. J., Patwardhan, A., Sanz-García, E., Best, C., Swedlow, J. R. & Kleywegt, G. J. 1 Jan 2013 In : Journal of Structural Biology. 184, 2, p. 173-181 9 p.

    Research output: Contribution to journalArticle

  97. A role for paralog-specific sumoylation in histone deacetylase 1 stability

    Citro, S., Jaffray, E., Hay, R. T., Seiser, C. & Chiocca, S. 2013 In : Journal of Molecular Cell Biology. 5, 6, p. 416-427 12 p.

    Research output: Contribution to journalArticle

  98. A sweet TET-a-tete-synergy of TET proteins and O-GlcNAc transferase in transcription

    Mariappa, D., Pathak, S. & van Aalten, D. M. F. 2013 In : EMBO Journal. 32, 5, p. 612-613 2 p.

    Research output: Contribution to journalEditorial

  99. CENP-A confers a reduction in height on octameric nucleosomes

    Miell, M. D. D., Barysz, H. M., Rappsilber, J., Allshire, R. C., Fuller, C. J., Straight, A. F., Guse, A., Downes, A. & Owen-Hughes, T. 2013 In : Nature Structural & Molecular Biology.

    Research output: Contribution to journalArticle

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