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Gene Regulation and Expression

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  1. Farmers without borders-genetic structuring in century old barley (Hordeum vulgare)

    Forsberg, N. E. G., Russell, J., Macaulay, M., Leino, M. W. & Hagenblad, J. 17 Sep 2014 In : Heredity.

    Research output: Contribution to journalArticle

  2. Chromatin and oxygen sensing in the context of JmjC histone demethylases

    Shmakova, A., Batie, M., Druker, J. & Rocha, S. 15 Sep 2014 In : Biochemical Journal. 462, 3, p. 385-395 11 p.

    Research output: Contribution to journalArticle

  3. Buffered Qualitative Stability explains the robustness and evolvability of transcriptional networks

    Albergante, L., Blow, J. J. & Newman, T. J. 2 Sep 2014 In : eLife. 3, 28 p.e02863

    Research output: Contribution to journalArticle

  4. Sumoylation controls host anti-bacterial response to the gut invasive pathogen Shigella flexneri

    Fritah, S., Lhocine, N., Golebiowski, F., Mounier, J., Andrieux, A., Jouvion, G., Hay, R. T., Sansonetti, P. & Dejean, A. Sep 2014 In : EMBO Reports. 15, 9, p. 965-972 8 p.

    Research output: Contribution to journalArticle

  5. Family-wide analysis of poly(ADP-ribose) polymerase activity

    Vyas, S., Matic, I., Uchima, L., Rood, J., Zaja, R., Hay, R. T., Ahel, I. & Chang, P. 21 Jul 2014 In : Nature Communications. 5, 13 p.4426

    Research output: Contribution to journalArticle

  6. The contribution of dormant origins to genome stability: from cell biology to human genetics

    Alver, R. C., Chadha, G. S. & Blow, J. J. Jul 2014 In : DNA Repair. 19, p. 182-189 8 p.

    Research output: Contribution to journalArticle

  7. Structural insight into SUMO chain recognition and manipulation by the ubiquitin ligase RNF4

    Xu, Y., Plechanovová, A., Simpson, P., Marchant, J., Leidecker, O., Kraatz, S., Hay, R. T. & Matthews, S. J. 27 Jun 2014 In : Nature Communications. 5, 4217

    Research output: Contribution to journalArticle

  8. A dynamic microtubule cytoskeleton directs medial actomyosin function during tube formation

    Booth, A. J. R., Blanchard, G. B., Adams, R. J. & Röper, K. 9 Jun 2014 In : Developmental Cell. 29, 5, p. 562-576 15 p.

    Research output: Contribution to journalArticle

  9. A conserved and essential basic region mediates tRNA binding to the Elp1 subunit of the Saccharomyces cerevisiae Elongator complex

    Di Santo, R., Bandau, S. & Stark, M. J. R. Jun 2014 In : Molecular Microbiology. 92, 6, p. 1227-1242 16 p.

    Research output: Contribution to journalArticle

  10. Sp100 isoform-specific regulation of human adenovirus 5 gene expression

    Berscheminski, J., Wimmer, P., Brun, J., Ip, W. H., Groitl, P., Horlacher, T., Jaffray, E., Hay, R. T., Dobner, T. & Schreiner, S. Jun 2014 In : Journal of Virology. 88, 11, p. 6076-6092 17 p.

    Research output: Contribution to journalArticle

  11. The essential roles of cytidine diphosphate-diacylglycerol synthase in bloodstream form Trypanosoma brucei

    Lilley, A. C., Major, L., Young, S., Stark, M. J. R. & Smith, T. K. May 2014 In : Molecular Microbiology. 92, 3, p. 453-470 18 p.

    Research output: Contribution to journalArticle

  12. Proteome-wide identification of SUMO2 modification sites

    Tammsalu, T., Matic, I., Jaffray, E. G., Ibrahim, A. F. M., Tatham, M. H. & Hay, R. T. 29 Apr 2014 In : Science Signaling. 7, 323, 10 p.rs2

    Research output: Contribution to journalArticle

  13. E3 ubiquitin ligase HOIP attenuates apoptotic cell death induced by cisplatin

    MacKay, C., Carroll, E., Ibrahim, A. F. M., Garg, A., Inman, G. J., Hay, R. T. & Alpi, A. F. 15 Apr 2014 In : Cancer Research. 74, 8, p. 2246-2257 12 p.

    Research output: Contribution to journalArticle

  14. A perspective on proteomics in cell biology

    Ahmad, Y. & Lamond, A. I. Apr 2014 In : Trends in Cell Biology. 24, 4, p. 257-264 8 p.

    Research output: Contribution to journalScientific review

  15. NDK-1, the homolog of NM23-H1/H2 regulates cell migration and apoptotic engulfment in C. elegans

    Fancsalszky, L., Monostori, E., Farkas, Z., Pourkarimi, E., Masoudi, N., Hargitai, B., Bosnar, M. H., Deželjin, M., Zsákai, A., Vellai, T., Mehta, A. & Takács-Vellai, K. 21 Mar 2014 In : PLoS ONE. 9, 3, 12 p.e92687

    Research output: Contribution to journalArticle

  16. SUMO chain-induced dimerization activates RNF4

    Rojas-Fernandez, A., Plechanovová, A., Hattersley, N., Jaffray, E., Tatham, M. H. & Hay, R. T. 20 Mar 2014 In : Molecular Cell. 53, 6, p. 880-92 13 p.

    Research output: Contribution to journalArticle

  17. Near real-time processing of proteomics data using Hadoop.

    Hillman, C., Ahmad, Y., Whitehorn, M. & Cobley, A. 14 Mar 2014 In : Big Data. 2, 1, p. 44-49 5 p.

    Research output: Contribution to journalArticle

  18. Phosphorylation of Sli15 by Ipl1 is important for proper CPC localization and chromosome stability in Saccharomyces cerevisiae

    Makrantoni, V., Corbishley, S. J., Rachidi, N., Morrice, N. A., Robinson, D. A. & Stark, M. J. R. 18 Feb 2014 In : PLoS ONE. 9, 2, 15 p.e89399

    Research output: Contribution to journalArticle

  19. Time-resolved quantitative proteomics implicates the core snRNP protein SmB together with SMN in neural trafficking

    Prescott, A. R., Bales, A., James, J., Trinkle-Mulcahy, L. & Sleeman, J. E. 15 Feb 2014 In : Journal of Cell Science. 127, 4, p. 812-827 16 p.

    Research output: Contribution to journalArticle

  20. PML isoforms in response to arsenic: high-resolution analysis of PML body structure and degradation

    Hands, K. J., Cuchet-Lourenco, D., Everett, R. D. & Hay, R. T. 15 Jan 2014 In : Journal of Cell Science. 127, 2, p. 365-375 11 p.

    Research output: Contribution to journalArticle

  21. Grow₂: The HIF system, energy homeostasis and the cell cycle

    Moniz, S., Biddlestone, J. & Rocha, S. 10 Jan 2014 In : Histology and Histopathology.

    Research output: Contribution to journalArticle

  22. Xenopus Cdc7 executes its essential function early in S phase and is counteracted by checkpoint-regulated protein phosphatase 1

    Poh, W. T., Chadha, G. S., Gillespie, P. J., Kaldis, P. & Blow, J. J. Jan 2014 In : Open Biology. 4, 130138

    Research output: Contribution to journalArticle

  23. Phosphorylated DegU manipulates cell fate differentiation in the Bacillus subtilis biofilm

    Marlow, V. L., Porter, M., Hobley, L., Kiley, T. B., Swedlow, J. R., Davidson, F. A. & Stanley-Wall, N. R. Jan 2014 In : Journal of Bacteriology. 196, 1, p. 16-27 10 p.

    Research output: Contribution to journalArticle

  24. The prevalence and origin of exoprotease producing cells in the Bacillus subtilis biofilm

    Marlow, V. L., Cianfanelli, F. R., Porter, M., Cairns, L. S., Dale, J. K. & Stanley-Wall, N. R. Jan 2014 In : Microbiology-SGM. 160, 1, p. 56-66 11 p.

    Research output: Contribution to journalArticle

  25. Analysis of Global RNA Synthesis at the Single Cell Level following Hypoxia

    Biddlestone, J., Druker, J., Shmakova, A., Ferguson, G., Swedlow, J. R. & Rocha, S. 2014 In : JoVE: Journal of Visualized Experiments. 87

    Research output: Contribution to journalArticle

  26. ANIA: ANnotation and Integrated Analysis of the 14-3-3 interactome

    Tinti, M., Madeira, F., Murugesan, G., Hoxhaj, G., Toth, R. & Mackintosh, C. 2014 In : Database: the Journal of Biological Databases and Curation. 2014, 15 p.bat085

    Research output: Contribution to journalArticle

  27. Biochemical analysis of TssK, a core component of the bacterial Type VI secretion system, reveals distinct oligomeric states of TssK and identifies a TssK-TssFG sub-complex

    English, G., Byron, O., Cianfanelli, F. R., Prescott, A. R. & Coulthurst, S. J. 2014 In : Biochemical Journal. 461, 2, p. 291-304 14 p.

    Research output: Contribution to journalArticle

  28. C. elegans whole genome sequencing reveals mutational signatures related to carcinogens and DNA repair deficiency.

    Meier, B., Cooke, S. L., Weiss, J., Bailly, A. P., Alexandrov, L. B., Marshall, J., Raine, K., Maddison, M., Anderson, E., Stratton, M. R., Gartner, A. & Campbell, P. J. 2014 In : Genome Research.

    Research output: Contribution to journalArticle

  29. Cell cycle progression in response to oxygen levels

    Ortmann, B., Druker, J. & Rocha, S. 2014 In : Cellular and Molecular Life Sciences. 71, 18, p. 3569-3582 14 p.

    Research output: Contribution to journalArticle

  30. Hypoxia activates IKK-NF-κB and the immune response in Drosophila melanogaster

    Bandarra, D., Biddlestone, J., Mudie, S., Muller, H. A. & Rocha, S. 2014 In : Bioscience Reports. 34, 4, 12 p.e00127

    Research output: Contribution to journalArticle

  31. Proteomic Selection of Immunodiagnostic Antigens for Trypanosoma congolense

    Fleming, J. R., Sastry, L., Crozier, T. W. M., Napier, G. B., Sullivan, L. & Ferguson, M. A. J. 2014 In : PLoS Neglected Tropical Diseases. 8, 6, e2936

    Research output: Contribution to journalArticle

  32. Regulatory and functional connection of microphthalmia-associated transcription factor and anti-metastatic pigment epithelium derived factor in melanoma

    Fernández-Barral, A., Orgaz, J. L., Baquero, P., Ali, Z., Moreno, A., Tiana, M., Gómez, V., Riveiro-Falkenbach, E., Cañadas, C., Zazo, S., Bertolotto, C., Davidson, I., Rodríguez-Peralto, J. L., Palmero, I., Rojo, F., Jensen, L. D., Del Peso, L. & Jiménez, B. 2014 In : Neoplasia. 16, 6, p. 529-542 14 p.

    Research output: Contribution to journalArticle

  33. siRNA screening to identify ubiquitin and ubiquitin-like system regulators of biological pathways in cultured mammalian cells

    Bett, J. S., Ibrahim, A. F. M., Garg, A. K., Rocha, S. & Hay, R. T. 2014 In : JoVE: Journal of Visualized Experiments. 87, e51572

    Research output: Contribution to journalArticle

  34. Tetramerization-defects of p53 result in aberrant ubiquitylation and transcriptional activity

    Lang, V., Pallara, C., Zabala, A., Lobato-Gil, S., Lopitz-Otsoa, F., Farrás, R., Hjerpe, R., Torres-Ramos, M., Zabaleta, L., Blattner, C., Hay, R. T., Barrio, R., Carracedo, A., Fernandez-Recio, J., Rodríguez, M. S. & Aillet, F. 2014 In : Molecular Oncology. 8, 5, p. 1026-1042 17 p.

    Research output: Contribution to journalArticle

  35. The double loop mattress suture

    Biddlestone, J., Samuel, M., Creagh, T. & Ahmad, T. 2014 In : Wound Repair and Regeneration. 22, 3, p. 415-423 9 p.

    Research output: Contribution to journalArticle

  36. The histone chaperones Vps75 and Nap1 form ring-like, tetrameric structures in solution

    Bowman, A., Hammond, C. M., Stirling, A., Ward, R., Shang, W., El-Mkami, H., Robinson, D. A., Svergun, D. I., Norman, D. G., Owen-Hughes, T. & Singh, V. 2014 In : Nucleic Acids Research. 42, 9, p. 6038-6051 13 p.

    Research output: Contribution to journalArticle

  37. Characterization of Native Protein Complexes and Protein Isoform Variation Using Size-fractionation-based Quantitative Proteomics

    Kirkwood, K. J., Ahmad, Y., Larance, M. & Lamond, A. I. 1 Dec 2013 In : Molecular & Cellular Proteomics. 12, 12, p. 3851-3873 23 p.

    Research output: Contribution to journalArticle

  38. Three wise centromere functions: see no error, hear no break, speak no delay

    Tanaka, T. U., Clayton, L. & Natsume, T. Dec 2013 In : EMBO Reports. 14, 12, p. 1073-1083 11 p.

    Research output: Contribution to journalScientific review

  39. Stress Response: Anything that Doesn't Kill You Makes You Stronger

    Gartner, A. & Akay, A. 18 Nov 2013 In : Current Biology. 23, 22, p. R1012-R1014 3 p.

    Research output: Contribution to journalArticle

  40. A comparison of in vitro nucleosome positioning mapped with chicken, frog and a variety of yeast core histones

    Allan, J., Fraser, R. M., Owen-Hughes, T., Docherty, K. & Singh, V. 15 Nov 2013 In : Journal of Molecular Biology. 425, 22, p. 4206-4222 17 p.

    Research output: Contribution to journalArticle

  41. Tmem79/Matt is the matted mouse gene and is a predisposing gene for atopic dermatitis in human subjects

    Brown, S. J. , Madhok, V. B. & 32 others Saunders, S. P., Goh, C. S. M., Palmer, C. N. A., Porter, R. M., Cole, C., Campbell, L. E., Gierlinski, M., Barton, G. J., Schneider, G., Balmain, A., Prescott, A. R., Weidinger, S., Baurecht, H., Kabesch, M., Gieger, C., Lee, Y-A., Tavendale, R., Mukhopadhyay, S., Turner, S. W., Sullivan, F. M., Relton, C., Burn, J., Meggitt, S., Smith, C. H., Allen, M. A., Barker, J. N. W. N., Reynolds, N. J., Cordell, H. J., Irvine, A. D., McLean, W. H. I., Sandilands, A. & Fallon, P. G. Nov 2013 In : Journal of Allergy and Clinical Immunology. 132, 5, p. 1121-1129 9 p.

    Research output: Contribution to journalArticle

  42. RNA-binding protein GLD-1/quaking genetically interacts with the mir-35 and the let-7 miRNA pathways in Caenorhabditis elegans

    Akay, A., Craig, A., Lehrbach, N., Larance, M., Pourkarimi, E., Wright, J. E., Lamond, A., Miska, E. & Gartner, A. Nov 2013 In : Open Biology. 3, 130151

    Research output: Contribution to journalArticle

  43. The Geminin and Idas coiled coils preferentially form a heterodimer that inhibits Geminin function in DNA replication licensing

    Caillat, C., Pefani, D-E., Gillespie, P. J., Taraviras, S., Blow, J. J., Lygerou, Z. & Perrakis, A. Nov 2013 In : Journal of Biological Chemistry. 288, 44, p. 31624-31634 11 p.

    Research output: Contribution to journalArticle

  44. Structural biology: Pivotal findings for a transcription machine

    Zomerdijk, J. 31 Oct 2013 In : Nature. 502, 7473, p. 629-630 2 p.

    Research output: Contribution to journalArticle

  45. Bod1 regulates protein phosphatase 2A at mitotic kinetochores

    Porter, I., Schleicher, K., Porter, M. & Swedlow, J. 25 Oct 2013 In : Nature Communications. 4, 2677

    Research output: Contribution to journalArticle

  46. HIF-independent role of prolyl hydroxylases in the cellular response to amino acids

    Durán, R. V., Mackenzie, E. D., Boulahbel, H., Frezza, C., Heiserich, L., Tardito, S., Bussolati, O., Rocha, S., Hall, M. N. & Gottlieb, E. 19 Sep 2013 In : Oncogene. 32, 38, p. 4549-4556 8 p.

    Research output: Contribution to journalArticle

  47. PHD1 links cell-cycle progression to oxygen sensing through hydroxylation of the centrosomal protein Cep192

    Moser, S. C., Bensaddek, D., Ortmann, B., Maure, J-F., Mudie, S., Blow, J. J., Lamond, A. I., Swedlow, J. R. & Rocha, S. 26 Aug 2013 In : Developmental Cell. 26, 4, p. 381-392 12 p.

    Research output: Contribution to journalArticle

  48. Plant SILAC: stable-isotope labelling with amino acids of Arabidopsis seedlings for quantitative proteomics

    Lewandowska, D., ten Have, S., Hodge, K., Tillemans, V., Lamond, A. I. & Brown, J. W. S. 20 Aug 2013 In : PLoS ONE. 8, 8, e72207

    Research output: Contribution to journalArticle

  49. Locus-specific proteomics by TChP: targeted chromatin purification

    Pourfarzad, F., Aghajanirefah, A., de Boer, E., Ten Have, S., Bryn van Dijk, T., Kheradmandkia, S., Stadhouders, R., Thongjuea, S., Soler, E., Gillemans, N., von Lindern, M., Demmers, J., Philipsen, S. & Grosveld, F. 15 Aug 2013 In : Cell Reports. 4, 3, p. 589-600 12 p.

    Research output: Contribution to journalArticle

  50. The NM23-H1/H2 homolog NDK-1 is required for full activation of Ras signaling in C. elegans

    Masoudi, N., Fancsalszky, L., Pourkarimi, E., Vellai, T., Alexa, A., Reményi, A., Gartner, A., Mehta, A. & Takács-Vellai, K. 15 Aug 2013 In : Development. 140, 16, p. 3486-3495 10 p.

    Research output: Contribution to journalArticle

  51. BslA is a self-assembling bacterial hydrophobin that coats the Bacillus subtilis biofilm

    Hobley, L., Ostrowski, A., Rao, F. V., Bromley, K. M., Porter, M., Prescott, A. R., Macphee, C. E., van Aalten, D. M. F. & Stanley-Wall, N. R. 13 Aug 2013 In : Proceedings of the National Academy of Sciences of the United States of America. 110, 33, p. 13600-13605 6 p.

    Research output: Contribution to journalArticle

  52. Cleaning up the masses: Exclusion lists to reduce contamination with HPLC-MS/MS

    Hodge, K., Ten Have, S., Hutton, L. & Lamond, A. I. 2 Aug 2013 In : Journal of Proteomics. 88, p. 92-103 12 p.

    Research output: Contribution to journalArticle

  53. Clinical proteomics stretch goals: EuPA 2012 roundtable report

    O'Neil, S. E., Palviainen, M. J., Ten Have, S., Filiou, M., Gonzalez, A., Hodge, K., Surinova, S., Penque, D. & Baker, M. S. 2 Aug 2013 In : Journal of Proteomics. 88, p. 37-40 4 p.

    Research output: Contribution to journalArticle

  54. PROTEINCHALLENGE: Crowd sourcing in proteomics analysis and software development

    Martin, S. F., Falkenberg, H., Dyrlund, T. F., Khoudoli, G. A., Mageean, C. J. & Linding, R. 2 Aug 2013 In : Journal of Proteomics. 88, p. 41-46 6 p.

    Research output: Contribution to journalArticle

  55. FMN2 is a novel regulator of the cyclin-dependent kinase inhibitor p21

    Yamada, K., Ono, M., Bensaddek, D., Lamond, A. I. & Rocha, S. 1 Aug 2013 In : Cell cycle (Georgetown, Tex.). 12, 15, p. 2348-2354 7 p.

    Research output: Contribution to journalArticle

  56. Combinatorial regulation of meiotic holliday junction resolution in C. elegans by HIM-6 (BLM) helicase, SLX-4, and the SLX-1, MUS-81 and XPF-1 nucleases

    Agostinho, A., Meier, B., Sonneville, R., Jagut, M., Woglar, A., Blow, J., Jantsch, V. & Gartner, A. 18 Jul 2013 In : PLoS Genetics. 9, 7, e1003591

    Research output: Contribution to journalArticle

  57. Kinetochores coordinate pericentromeric cohesion and early DNA replication by Cdc7-Dbf4 kinase recruitment

    Natsume, T., Müller, C. A., Katou, Y., Retkute, R., Gierlinski, M., Araki, H., Blow, J. J., Shirahige, K., Nieduszynski, C. A. & Tanaka, T. U. 6 Jun 2013 In : Molecular Cell. 50, 5, p. 661-674 14 p.

    Research output: Contribution to journalArticle

  58. Insights into Diphthamide, key Diphtheria Toxin effector

    Abdel-Fattah, W., Scheidt, V., Uthman, S., Stark, M. J. R. & Schaffrath, R. 3 May 2013 In : Toxins. 5, 5, p. 958-968 11 p.

    Research output: Contribution to journalArticle

  59. Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease

    Sharifi, R. , Morra, R. , Appel, C. D. , Tallis, M. , Chioza, B. , Jankevicius, G. , Simpson, M. A. , Matic, I. , Ozkan, E. , Golia, B. , Schellenberg, M. J. , Weston, R. , Williams, J. G. , Rossi, M. N. , Galehdari, H. , Krahn, J. , Wan, A. , Trembath, R. C. , Crosby, A. H. , Ahel, D. & 5 others Hay, R., Ladurner, A. G., Timinszky, G., Williams, R. S. & Ahel, I. 2 May 2013 In : EMBO Journal. 32, 9, p. 1225-1237 13 p.

    Research output: Contribution to journalArticle

  60. miR-132/212 knockout mice reveal roles for these miRNAs in regulating cortical synaptic transmission and plasticity

    Remenyi, J., van den Bosch, M. W. M., Palygin, O., Mistry, R. B., McKenzie, C., Macdonald, A., Hutvagner, G., Arthur, J. S. C., Frenguelli, B. G. & Pankratov, Y. 26 Apr 2013 In : PLoS ONE. 8, 4, 14 p.e62509

    Research output: Contribution to journalArticle

  61. Analysis of human protein replacement stable cell lines established using snoMEN-PR vector

    Ono, M., Yamada, K., Endo, A., Avolio, F. & Lamond, A. I. 25 Apr 2013 In : PLoS ONE. 8, 4, 12 p.e62305

    Research output: Contribution to journalArticle

  62. The P-body component USP52/PAN2 is a novel regulator of HIF1A mRNA stability

    Bett, J. S., Ibrahim, A. F. M., Garg, A. K., Kelly, V., Pedrioli, P., Rocha, S. & Hay, R. T. 15 Apr 2013 In : Biochemical Journal. 451, 2, p. 185-194 10 p.BJ20130026

    Research output: Contribution to journalArticle

  63. Correlative imaging of fluorescent proteins in resin-embedded plant material

    Bell, K., Mitchell, S., Paultre, D., Posch, M. & Oparka, K. Apr 2013 In : Plant Physiology. 161, 4, p. 1595-1603 9 p.

    Research output: Contribution to journalArticle

  64. Decoding the SUMO signal

    Hay, R. T. Apr 2013 In : Biochemical Society Transactions. 41, 2, p. 463-473 11 p.

    Research output: Contribution to journalArticle

  65. Degradation characteristics of the major PML isoforms in response to arsenic

    Hands, K. J., Cuchet-Lourenco, D., Everett, R. D. & Hay, R. T. Apr 2013 In : British Journal of Haematology. 161, Suppl. 1, p. 17 1 p.35

    Research output: Contribution to journalMeeting abstract

  66. Small RNAs derived from the 5' end of tRNA can inhibit protein translation in human cells

    Sobala, A. & Hutvagner, G. Apr 2013 In : RNA Biology. 10, 4, p. 553-563 11 p.

    Research output: Contribution to journalArticle

  67. Topoisomerase IIα promotes activation of RNA polymerase i transcription by facilitating pre-initiation complex formation

    Ray, S., Panova, T., Miller, G., Volkov, A., Porter, A. C. G., Russell, J., Panov, K. I. & Zomerdijk, J. C. B. M. 19 Mar 2013 In : Nature Communications. 4, 1598

    Research output: Contribution to journalArticle

  68. Global subcellular characterization of protein degradation using quantitative proteomics

    Larance, M., Ahmad, Y., Kirkwood, K. J., Ly, T. & Lamond, A. I. Mar 2013 In : Molecular & Cellular Proteomics. 12, 3, p. 638-650 13 p.

    Research output: Contribution to journalArticle

  69. Identification and functional characterization of FMN2: a regulator of the cyclin-dependent kinase Inhibitor p21

    Yamada, K., Ono, M., Perkins, N. D., Rocha, S. & Lamond, A. I. Mar 2013 In : Molecular Cell. 49, 5, p. 922-933 12 p.

    Research output: Contribution to journalArticle

  70. DNA-binding regulates site-specific ubiquitination of IRF-1

    Landré, V., Pion, E., Narayan, V., Xirodimas, D. P. & Ball, K. L. 1 Feb 2013 In : Biochemical Journal. 449, 3, p. 707-717 11 p.

    Research output: Contribution to journalArticle

  71. Web-based visualisation and analysis of 3D electron-microscopy data from EMDB and PDB

    Lagerstedt, I., Moore, W. J., Patwardhan, A., Sanz-García, E., Best, C., Swedlow, J. R. & Kleywegt, G. J. 1 Jan 2013 In : Journal of Structural Biology. 184, 2, p. 173-181 9 p.

    Research output: Contribution to journalArticle

  72. A role for paralog-specific sumoylation in histone deacetylase 1 stability

    Citro, S., Jaffray, E., Hay, R. T., Seiser, C. & Chiocca, S. 2013 In : Journal of Molecular Cell Biology. 5, 6, p. 416-427 12 p.

    Research output: Contribution to journalArticle

  73. A sweet TET-a-tete-synergy of TET proteins and O-GlcNAc transferase in transcription

    Mariappa, D., Pathak, S. & van Aalten, D. M. F. 2013 In : EMBO Journal. 32, 5, p. 612-613 2 p.

    Research output: Contribution to journalEditorial

  74. CENP-A confers a reduction in height on octameric nucleosomes

    Miell, M. D. D., Barysz, H. M., Rappsilber, J., Allshire, R. C., Fuller, C. J., Straight, A. F., Guse, A., Downes, A. & Owen-Hughes, T. 2013 In : Nature Structural & Molecular Biology.

    Research output: Contribution to journalArticle

  75. Degradation characteristics of the major PML isoforms in response to arsenic

    Hands, K. J., Cuchet-Lourenco, D., Everett, R. D. & Hay, R. T. 2013

    Research output: Contribution to conferenceAbstract

  76. Esperanto for histones: CENP-A, not CenH3, is the centromeric histone H3 variant

    Earnshaw, W. C. , Allshire, R. C. , Black, B. E. , Bloom, K. , Salmon, E. D. , Brinkley, B. R. , Brown, W. , Cheeseman, I. M. , Choo, K. H. A. , Copenhaver, G. P. , DeLuca, J. G. , Luger, K. , Desai, A. , Oegema, K. , Cleveland, D. W. , Diekmann, S. , Erhardt, S. , Fitzgerald-Hayes, M. , Foltz, D. , Fukagawa, T. & 37 others Gassmann, R., Maiato, H., Gerlich, D. W., Glover, D. M., Gorbsky, G. J., Harrison, S. C., Heun, P., Hirota, T., Jansen, L. E. T., Karpen, G., Kops, G. J. P. L., Lampson, M. A., Lens, S. M., Losada, A., Maddox, P. S., Margolis, R. L., Masumoto, H., McAinsh, A. D., Mellone, B. G., O'Neill, R. J., Meraldi, P., Musacchio, A., Scott, K. C., Sullivan, B. A., Straight, A. F., Stukenberg, P. T., Sullivan, K. F., Sunkel, C. E., Swedlow, J. R., Walczak, C. E., Warburton, P. E., Westermann, S., Willard, H. F., Wordeman, L., Yanagida, M., Yen, T. J. & Yoda, K. 2013 In : Chromosome Research. 21, 2, p. 101-106 6 p.

    Research output: Contribution to journalArticle

  77. Germ cell apoptosis and DNA damage responses

    Bailly, A. & Gartner, A. 2013 Germ Cell Development in C. elegans. Schedl, T. (ed.). New York: Springer, Vol. 757, p. 249-276 28 p. (Advances in Experimental Medicine and Biology).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  78. Mechanisms and functions of ATP-dependent chromatin-remodeling enzymes

    Narlikar, G. J., Sundaramoorthy, R. & Owen-Hughes, T. 2013 In : Cell. 154, 3, p. 490-503 14 p.

    Research output: Contribution to journalArticle

  79. Modification of Akt by SUMO conjugation regulates alternative splicing and cell cycle

    Risso, G., Pelisch, F., Pozzi, B., Mammi, P., Blaustein, M., Colman-Lerner, A. & Srebrow, A. 2013 In : Cell Cycle. 12, 19, p. 3165-3174 10 p.

    Research output: Contribution to journalArticle

  80. Modulation of higher order chromatin conformation in mammalian cell nuclei can be mediated by polyamines and divalent cations

    Visvanathan, A., Ahmed, K., Even-Faitelson, L., Lleres, D., Bazett-Jones, D. P. & Lamond, A. I. 2013 In : PLoS ONE. 8, 6, 16 p. e67689

    Research output: Contribution to journalArticle

  81. Prohibitin is required for transcriptional repression by the WT1-BASP1 complex

    Toska, E., Shandilya, J., Goodfellow, S. J., Medler, K. F. & Roberts, S. G. E. 2013 In : Oncogene.

    Research output: Contribution to journalArticle

  82. Replisome stall events have shaped the distribution of replication origins in the genomes of yeasts

    Newman, T. J., Mamun, M. A., Nieduszynski, C. A. & Blow, J. J. 2013 In : Nucleic Acids Research. n/a, 14 p.n/a

    Research output: Contribution to journalArticle

  83. Stochastic association of neighboring replicons creates replication factories in budding yeast

    Saner, N., Karschau, J., Natsume, T., Gierlinski, M., Retkute, R., Hawkins, M., Nieduszynski, C. A., Blow, J. J., de Moura, A. P. S. & Tanaka, T. U. 2013 In : Journal of Cell Biology. 202, 7, p. 1001-1012 12 p.

    Research output: Contribution to journalArticle

  84. Structural biology: Pivotal findings for a transcription machine

    Zomerdijk, J. 2013 In : Nature. 502, 7473, p. 629-630 2 p.

    Research output: Contribution to journalArticle

  85. Tale of two transcription factors: NF-кB and HIF crosstalk

    Bandarra, D. & Rocha, S. 2013 In : OA Molecular and Cell Biology. 1, 1, p. 1-7 7 p.

    Research output: Contribution to journalArticle

  86. TfR1 interacts with the IKK complex and is involved in IKK-NF-kappaB signalling

    Kenneth, N. S., Mudie, S., Naron, S. & Rocha, S. 2013 In : Biochemical Journal. 449, p. 275-284

    Research output: Contribution to journalArticle

  87. The amidation step of Diphthamide biosynthesis in yeast requires DPH6, a gene identified through mining the DPH1-DPH5 interaction network

    Uthman, S., Baer, C., Scheidt, V., Liu, S., Ten Have, S., Giorgini, F., Stark, M. J. R. & Schaffrath, R. 2013 In : PLoS Genetics. 9, 2, e1003334

    Research output: Contribution to journalArticle

  88. Ube2W conjugates ubiquitin to α-amino groups of protein N-termini

    Tatham, M. H., Plechanovova, A., Jaffray, E. G., Salmen, H. & Hay, R. T. 2013 In : Biochemical Journal. 453, 1, p. 137-145 9 p.

    Research output: Contribution to journalArticle

  89. Ubiquitylation-dependent localization of PLK1 in mitosis

    Beck, J., Maerki, S., Posch, M., Metzger, T., Persaud, A., Scheel, H., Hofmann, K., Rotin, D., Pedrioli, P., Swedlow, J. R., Peter, M. & Sumara, I. 2013 In : Nature Cell Biology. 15, 4, p. 430-439 10 p.

    Research output: Contribution to journalArticle

  90. Heterologous SUMO-2/3-Ubiquitin Chains Optimize IκBα Degradation and NF-κB Activity

    Aillet, F., Lopitz-Otsoa, F., Egaña, I., Hjerpe, R., Fraser, P., Hay, R. T., Rodriguez, M. S. & Lang, V. 20 Dec 2012 In : PLoS ONE. 7, 12, e51672

    Research output: Contribution to journalArticle

  91. Structural plasticity of histones H3–H4 facilitates their allosteric exchange between RbAp48 and ASF1

    Zhang, W., Yyl, M., Ward, R., Sobott, F., Maman, J., Murthy, A., Watson, A., Fedorov, O., Bowman, A., Owen-Hughes, T., El Mkami, H., Murzina, N., Norman, D. G. & Laue, E. 25 Nov 2012 In : Nature Structural & Molecular Biology. 20, 1, p. 29-35

    Research output: Contribution to journalArticle

  92. Dormant Origins, the Licensing Checkpoint, and the Response to Replicative Stresses

    McIntosh, D. & Blow, J. J. Oct 2012 In : Cold spring harbor perspectives in biology. 4, 10, 10 p.012955

    Research output: Contribution to journalArticle

  93. Family with Sequence Similarity 60A (FAM60A) Protein Is a Cell Cycle-fluctuating Regulator of the SIN3-HDAC1 Histone Deacetylase Complex

    Munoz, I. M., Macartney, T., Sanchez-Pulido, L., Ponting, C. P., Rocha, S. & Rouse, J. 21 Sep 2012 In : Journal of Biological Chemistry. 287, 39, p. 32346-53 8 p.

    Research output: Contribution to journalArticle

  94. The control of cell energy metabolism by NF-j B transcription factors

    Mauro, C., Leow, S. C., Anso, E., Rocha, S., Thotakura, A. K., Tornatore, L., Moretti, M., De Smaele, E., Beg, A. A., Tergaonkar, V., Chandel, N. S. & Franzoso, G. Sep 2012 In : Immunology. 137, S1, p. 19 1 p.

    Research output: Contribution to journalMeeting abstract

  95. Exploiting the MDM2-CK1α protein-protein interface to develop novel biologics that induce UBL-kinase-modification and inhibit cell growth

    Huart, A-S., MacLaine, N. J., Narayan, V. & Hupp, T. R. 20 Aug 2012 In : PLoS ONE. 7, 8, e43391

    Research output: Contribution to journalArticle

  96. Reanalysis of phosphoproteomics data uncovers ADP-ribosylation sites

    Matic, I., Ahel, I. & Hay, R. T. Aug 2012 In : Nature Methods. 9, 8, p. 771-772 2 p.

    Research output: Contribution to journalLetter

  97. ALDH2 mediates 5-nitrofuran activity in multiple species

    Zhou, L., Ishizaki, H., Spitzer, M., Taylor, K. L., Temperley, N. D., Johnson, S. L., Brear, P., Gautier, P., Zeng, Z., Mitchell, A., Narayan, V., McNeil, E. M., Melton, D. W., Smith, T. K., Tyers, M., Westwood, N. J. & Patton, E. E. 27 Jul 2012 In : Chemistry & Biology. 19, 7, p. 883-892 10 p.

    Research output: Contribution to journalArticle

  98. Influence of the nuclear membrane, active transport, and cell shape on the Hes1 and p53-Mdm2 pathways: insights from spatio-temporal modelling

    Sturrock, M., Terry, A. J., Xirodimas, D. P., Thompson, A. M. & Chaplain, M. A. J. Jul 2012 In : Bulletin of Mathematical Biology. 74, 7, p. 1531-1579 49 p.

    Research output: Contribution to journalArticle

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