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Gene Regulation and Expression

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  1. E3 Ubiquitin Ligase HOIP Attenuates Apoptotic Cell Death Induced by Cisplatin

    Mackay, C., Carroll, E., Ibrahim, A. F. M., Garg, A., Inman, G. J., Hay, R. T. & Alpi, A. F. 31 Mar 2014 In : Cancer Research.

    Research output: Contribution to journalArticle

  2. The histone chaperones Vps75 and Nap1 form ring-like, tetrameric structures in solution

    Bowman, A., Hammond, C. M., Stirling, A., Ward, R., Shang, W., El-Mkami, H., Robinson, D. A., Svergun, D. I., Norman, D. G. & Owen-Hughes, T. 31 Mar 2014 In : Nucleic Acids Research.

    Research output: Contribution to journalArticle

  3. Monitoring Keap1-Nrf2 interactions in single live cells

    Baird, L., Swift, S., Llères, D. & Dinkova-Kostova, A. T. 25 Mar 2014

    Research output: Contribution to journalArticle

  4. PML isoforms in response to arsenic: high-resolution analysis of PML body structure and degradation

    Hands, K. J., Cuchet-Lourenco, D., Everett, R. D. & Hay, R. T. 15 Jan 2014 In : Journal of Cell Science. 127, 2, p. 365-375 11 p.

    Research output: Contribution to journalArticle

  5. Grow₂: The HIF system, energy homeostasis and the cell cycle

    Moniz, S., Biddlestone, J. & Rocha, S. 10 Jan 2014 In : Histology and Histopathology.

    Research output: Contribution to journalArticle

  6. Xenopus Cdc7 executes its essential function early in S phase and is counteracted by checkpoint-regulated protein phosphatase 1

    Poh, W. T., Chadha, G. S., Gillespie, P. J., Kaldis, P. & Blow, J. J. Jan 2014 In : Open Biology. 4, 130138

    Research output: Contribution to journalArticle

  7. Phosphorylated DegU manipulates cell fate differentiation in the Bacillus subtilis biofilm

    Marlow, V. L., Porter, M., Hobley, L., Kiley, T. B., Swedlow, J. R., Davidson, F. A. & Stanley-Wall, N. R. Jan 2014 In : Journal of Bacteriology. 196, 1, p. 16-27 10 p.

    Research output: Contribution to journalArticle

  8. The prevalence and origin of exoprotease producing cells in the Bacillus subtilis biofilm

    Marlow, V. L., Cianfanelli, F. R., Porter, M., Cairns, L. S., Dale, J. K. & Stanley-Wall, N. R. Jan 2014 In : Microbiology-SGM. 160, 1, p. 56-66 11 p.

    Research output: Contribution to journalArticle

  9. The double loop mattress suture

    Biddlestone, J., Samuel, M., Creagh, T. & Ahmad, T. 2014 In : Wound Repair and Regeneration.

    Research output: Contribution to journalArticle

  10. Characterization of Native Protein Complexes and Protein Isoform Variation Using Size-fractionation-based Quantitative Proteomics

    Kirkwood, K. J., Ahmad, Y., Larance, M. & Lamond, A. I. 1 Dec 2013 In : Molecular & Cellular Proteomics. 12, 12, p. 3851-3873 23 p.

    Research output: Contribution to journalArticle

  11. Three wise centromere functions: see no error, hear no break, speak no delay

    Tanaka, T. U., Clayton, L. & Natsume, T. Dec 2013 In : EMBO Reports. 14, 12, p. 1073-1083 11 p.

    Research output: Contribution to journalScientific review

  12. Stress Response: Anything that Doesn't Kill You Makes You Stronger

    Gartner, A. & Akay, A. 18 Nov 2013 In : Current Biology. 23, 22, p. R1012-R1014 3 p.

    Research output: Contribution to journalArticle

  13. A comparison of in vitro nucleosome positioning mapped with chicken, frog and a variety of yeast core histones

    Allan, J., Fraser, R. M., Owen-Hughes, T., Docherty, K. & Singh, V. 15 Nov 2013 In : Journal of Molecular Biology. 425, 22, p. 4206-4222 17 p.

    Research output: Contribution to journalArticle

  14. Tmem79/Matt is the matted mouse gene and is a predisposing gene for atopic dermatitis in human subjects

    Madhok, V. B. & 33 others Saunders, S. P., Goh, C. S. M., Brown, S. J., Palmer, C. N. A., Porter, R. M., Cole, C., Campbell, L. E., Gierlinski, M., Barton, G. J., Schneider, G., Balmain, A., Prescott, A. R., Weidinger, S., Baurecht, H., Kabesch, M., Gieger, C., Lee, Y-A., Tavendale, R., Mukhopadhyay, S., Turner, S. W., Sullivan, F. M., Relton, C., Burn, J., Meggitt, S., Smith, C. H., Allen, M. A., Barker, J. N. W. N., Reynolds, N. J., Cordell, H. J., Irvine, A. D., McLean, W. H. I., Sandilands, A. & Fallon, P. G. Nov 2013 In : Journal of Allergy and Clinical Immunology. 132, 5, p. 1121-1129 9 p.

    Research output: Contribution to journalArticle

  15. RNA-binding protein GLD-1/quaking genetically interacts with the mir-35 and the let-7 miRNA pathways in Caenorhabditis elegans

    Akay, A., Craig, A., Lehrbach, N., Larance, M., Pourkarimi, E., Wright, J. E., Lamond, A., Miska, E. & Gartner, A. Nov 2013 In : Open Biology. 3, 130151

    Research output: Contribution to journalArticle

  16. The Geminin and Idas coiled coils preferentially form a heterodimer that inhibits Geminin function in DNA replication licensing

    Caillat, C., Pefani, D-E., Gillespie, P. J., Taraviras, S., Blow, J. J., Lygerou, Z. & Perrakis, A. Nov 2013 In : Journal of Biological Chemistry. 288, 44, p. 31624-31634 11 p.

    Research output: Contribution to journalArticle

  17. Structural biology: Pivotal findings for a transcription machine

    Zomerdijk, J. 31 Oct 2013 In : Nature. 502, 7473, p. 629-630 2 p.

    Research output: Contribution to journalArticle

  18. Bod1 regulates protein phosphatase 2A at mitotic kinetochores

    Porter, I., Schleicher, K., Porter, M. & Swedlow, J. 25 Oct 2013 In : Nature Communications. 4, 2677

    Research output: Contribution to journalArticle

  19. PHD1 links cell-cycle progression to oxygen sensing through hydroxylation of the centrosomal protein Cep192

    Moser, S. C., Bensaddek, D., Ortmann, B., Maure, J-F., Mudie, S., Blow, J. J., Lamond, A. I., Swedlow, J. R. & Rocha, S. 26 Aug 2013 In : Developmental Cell. 26, 4, p. 381-392 12 p.

    Research output: Contribution to journalArticle

  20. Plant SILAC: stable-isotope labelling with amino acids of Arabidopsis seedlings for quantitative proteomics

    Lewandowska, D., ten Have, S., Hodge, K., Tillemans, V., Lamond, A. I. & Brown, J. W. S. 20 Aug 2013 In : PLoS ONE. 8, 8, e72207

    Research output: Contribution to journalArticle

  21. Locus-specific proteomics by TChP: targeted chromatin purification

    Pourfarzad, F., Aghajanirefah, A., de Boer, E., Ten Have, S., Bryn van Dijk, T., Kheradmandkia, S., Stadhouders, R., Thongjuea, S., Soler, E., Gillemans, N., von Lindern, M., Demmers, J., Philipsen, S. & Grosveld, F. 15 Aug 2013 In : Cell Reports. 4, 3, p. 589-600 12 p.

    Research output: Contribution to journalArticle

  22. BslA is a self-assembling bacterial hydrophobin that coats the Bacillus subtilis biofilm

    Hobley, L., Ostrowski, A., Rao, F. V., Bromley, K. M., Porter, M., Prescott, A. R., Macphee, C. E., van Aalten, D. M. F. & Stanley-Wall, N. R. 13 Aug 2013 In : Proceedings of the National Academy of Sciences of the United States of America. 110, 33, p. 13600-13605 6 p.

    Research output: Contribution to journalArticle

  23. Cleaning up the masses: Exclusion lists to reduce contamination with HPLC-MS/MS

    Hodge, K., Ten Have, S., Hutton, L. & Lamond, A. I. 2 Aug 2013 In : Journal of Proteomics. 88, p. 92-103 12 p.

    Research output: Contribution to journalArticle

  24. Clinical proteomics stretch goals: EuPA 2012 roundtable report

    O'Neil, S. E., Palviainen, M. J., Ten Have, S., Filiou, M., Gonzalez, A., Hodge, K., Surinova, S., Penque, D. & Baker, M. S. 2 Aug 2013 In : Journal of Proteomics. 88, p. 37-40 4 p.

    Research output: Contribution to journalArticle

  25. PROTEINCHALLENGE: Crowd sourcing in proteomics analysis and software development

    Martin, S. F., Falkenberg, H., Dyrlund, T. F., Khoudoli, G. A., Mageean, C. J. & Linding, R. 2 Aug 2013 In : Journal of Proteomics. 88, p. 41-46 6 p.

    Research output: Contribution to journalArticle

  26. Combinatorial regulation of meiotic holliday junction resolution in C. elegans by HIM-6 (BLM) helicase, SLX-4, and the SLX-1, MUS-81 and XPF-1 nucleases

    Agostinho, A., Meier, B., Sonneville, R., Jagut, M., Woglar, A., Blow, J., Jantsch, V. & Gartner, A. 18 Jul 2013 In : PLoS Genetics. 9, 7, e1003591

    Research output: Contribution to journalArticle

  27. Kinetochores coordinate pericentromeric cohesion and early DNA replication by Cdc7-Dbf4 kinase recruitment

    Natsume, T., Müller, C. A., Katou, Y., Retkute, R., Gierlinski, M., Araki, H., Blow, J. J., Shirahige, K., Nieduszynski, C. A. & Tanaka, T. U. 6 Jun 2013 In : Molecular Cell. 50, 5, p. 661-674 14 p.

    Research output: Contribution to journalArticle

  28. Insights into Diphthamide, key Diphtheria Toxin effector

    Abdel-Fattah, W., Scheidt, V., Uthman, S., Stark, M. J. R. & Schaffrath, R. 3 May 2013 In : Toxins. 5, 5, p. 958-968 11 p.

    Research output: Contribution to journalArticle

  29. Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease

    Sharifi, R. , Morra, R. , Appel, C. D. , Tallis, M. , Chioza, B. , Jankevicius, G. , Simpson, M. A. , Matic, I. , Ozkan, E. , Golia, B. , Schellenberg, M. J. , Weston, R. , Williams, J. G. , Rossi, M. N. , Galehdari, H. , Krahn, J. , Wan, A. , Trembath, R. C. , Crosby, A. H. , Ahel, D. & 5 others Hay, R., Ladurner, A. G., Timinszky, G., Williams, R. S. & Ahel, I. 2 May 2013 In : EMBO Journal. 32, 9, p. 1225-1237 13 p.

    Research output: Contribution to journalArticle

  30. miR-132/212 knockout mice reveal roles for these miRNAs in regulating cortical synaptic transmission and plasticity

    Remenyi, J., van den Bosch, M. W. M., Palygin, O., Mistry, R. B., McKenzie, C., Macdonald, A., Hutvagner, G., Arthur, J. S. C., Frenguelli, B. G. & Pankratov, Y. 26 Apr 2013 In : PLoS ONE. 8, 4, 14 p.e62509

    Research output: Contribution to journalArticle

  31. Analysis of human protein replacement stable cell lines established using snoMEN-PR vector

    Ono, M., Yamada, K., Endo, A., Avolio, F. & Lamond, A. I. 25 Apr 2013 In : PLoS ONE. 8, 4, 12 p.e62305

    Research output: Contribution to journalArticle

  32. The P-body component USP52/PAN2 is a novel regulator of HIF1A mRNA stability

    Bett, J. S., Ibrahim, A. F. M., Garg, A. K., Kelly, V., Pedrioli, P., Rocha, S. & Hay, R. T. 15 Apr 2013 In : Biochemical Journal. 451, 2, p. 185-194 10 p.BJ20130026

    Research output: Contribution to journalArticle

  33. Correlative imaging of fluorescent proteins in resin-embedded plant material

    Bell, K., Mitchell, S., Paultre, D., Posch, M. & Oparka, K. Apr 2013 In : Plant Physiology. 161, 4, p. 1595-1603 9 p.

    Research output: Contribution to journalArticle

  34. Decoding the SUMO signal

    Hay, R. T. Apr 2013 In : Biochemical Society Transactions. 41, 2, p. 463-473 11 p.

    Research output: Contribution to journalArticle

  35. Degradation characteristics of the major PML isoforms in response to arsenic

    Hands, K. J., Cuchet-Lourenco, D., Everett, R. D. & Hay, R. T. Apr 2013 In : British Journal of Haematology. 161, Suppl. 1, p. 17 1 p.35

    Research output: Contribution to journalMeeting abstract

  36. Small RNAs derived from the 5' end of tRNA can inhibit protein translation in human cells

    Sobala, A. & Hutvagner, G. Apr 2013 In : RNA Biology. 10, 4, p. 553-563 11 p.

    Research output: Contribution to journalArticle

  37. Topoisomerase IIα promotes activation of RNA polymerase i transcription by facilitating pre-initiation complex formation

    Ray, S., Panova, T., Miller, G., Volkov, A., Porter, A. C. G., Russell, J., Panov, K. I. & Zomerdijk, J. C. B. M. 19 Mar 2013 In : Nature Communications. 4, 1598

    Research output: Contribution to journalArticle

  38. Global subcellular characterization of protein degradation using quantitative proteomics

    Larance, M., Ahmad, Y., Kirkwood, K. J., Ly, T. & Lamond, A. I. Mar 2013 In : Molecular & Cellular Proteomics. 12, 3, p. 638-650 13 p.

    Research output: Contribution to journalArticle

  39. Identification and functional characterization of FMN2: a regulator of the cyclin-dependent kinase Inhibitor p21

    Yamada, K., Ono, M., Perkins, N. D., Rocha, S. & Lamond, A. I. Mar 2013 In : Molecular Cell. 49, 5, p. 922-933 12 p.

    Research output: Contribution to journalArticle

  40. DNA-binding regulates site-specific ubiquitination of IRF-1

    Landré, V., Pion, E., Narayan, V., Xirodimas, D. P. & Ball, K. L. 1 Feb 2013 In : Biochemical Journal. 449, 3, p. 707-717 11 p.

    Research output: Contribution to journalArticle

  41. Web-based visualisation and analysis of 3D electron-microscopy data from EMDB and PDB

    Lagerstedt, I., Moore, W. J., Patwardhan, A., Sanz-García, E., Best, C., Swedlow, J. R. & Kleywegt, G. J. 1 Jan 2013 In : Journal of Structural Biology. 184, 2, p. 173-181 9 p.

    Research output: Contribution to journalArticle

  42. A role for paralog-specific sumoylation in histone deacetylase 1 stability

    Citro, S., Jaffray, E., Hay, R. T., Seiser, C. & Chiocca, S. 2013 In : Journal of Molecular Cell Biology. 5, 6, p. 416-427 12 p.

    Research output: Contribution to journalArticle

  43. A sweet TET-a-tete-synergy of TET proteins and O-GlcNAc transferase in transcription

    Mariappa, D., Pathak, S. & van Aalten, D. M. F. 2013 In : EMBO Journal. 32, 5, p. 612-613 2 p.

    Research output: Contribution to journalEditorial

  44. CENP-A confers a reduction in height on octameric nucleosomes

    Miell, M. D. D., Barysz, H. M., Rappsilber, J., Allshire, R. C., Fuller, C. J., Straight, A. F., Guse, A., Downes, A. & Owen-Hughes, T. 2013 In : Nature Structural & Molecular Biology.

    Research output: Contribution to journalArticle

  45. Degradation characteristics of the major PML isoforms in response to arsenic

    Hands, K. J., Cuchet-Lourenco, D., Everett, R. D. & Hay, R. T. 2013

    Research output: Contribution to conferenceAbstract

  46. Esperanto for histones: CENP-A, not CenH3, is the centromeric histone H3 variant

    Earnshaw, W. C. , Allshire, R. C. , Black, B. E. , Bloom, K. , Salmon, E. D. , Brinkley, B. R. , Brown, W. , Cheeseman, I. M. , Choo, K. H. A. , Copenhaver, G. P. , DeLuca, J. G. , Luger, K. , Desai, A. , Oegema, K. , Cleveland, D. W. , Diekmann, S. , Erhardt, S. , Fitzgerald-Hayes, M. , Foltz, D. , Fukagawa, T. & 37 others Gassmann, R., Maiato, H., Gerlich, D. W., Glover, D. M., Gorbsky, G. J., Harrison, S. C., Heun, P., Hirota, T., Jansen, L. E. T., Karpen, G., Kops, G. J. P. L., Lampson, M. A., Lens, S. M., Losada, A., Maddox, P. S., Margolis, R. L., Masumoto, H., McAinsh, A. D., Mellone, B. G., O'Neill, R. J., Meraldi, P., Musacchio, A., Scott, K. C., Sullivan, B. A., Straight, A. F., Stukenberg, P. T., Sullivan, K. F., Sunkel, C. E., Swedlow, J. R., Walczak, C. E., Warburton, P. E., Westermann, S., Willard, H. F., Wordeman, L., Yanagida, M., Yen, T. J. & Yoda, K. 2013 In : Chromosome Research. 21, 2, p. 101-106 6 p.

    Research output: Contribution to journalArticle

  47. Germ cell apoptosis and DNA damage responses

    Bailly, A. & Gartner, A. 2013 Germ Cell Development in C. elegans. Schedl, T. (ed.). New York: Springer, Vol. 757, p. 249-276 28 p. (Advances in Experimental Medicine and Biology).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  48. Mechanisms and functions of ATP-dependent chromatin-remodeling enzymes

    Narlikar, G. J., Sundaramoorthy, R. & Owen-Hughes, T. 2013 In : Cell. 154, 3, p. 490-503 14 p.

    Research output: Contribution to journalArticle

  49. Modification of Akt by SUMO conjugation regulates alternative splicing and cell cycle

    Risso, G., Pelisch, F., Pozzi, B., Mammi, P., Blaustein, M., Colman-Lerner, A. & Srebrow, A. 2013 In : Cell Cycle. 12, 19, p. 3165-3174 10 p.

    Research output: Contribution to journalArticle

  50. Modulation of higher order chromatin conformation in mammalian cell nuclei can be mediated by polyamines and divalent cations

    Visvanathan, A., Ahmed, K., Even-Faitelson, L., Lleres, D., Bazett-Jones, D. P. & Lamond, A. I. 2013 In : PLoS ONE. 8, 6, 16 p. e67689

    Research output: Contribution to journalArticle

  51. Replisome stall events have shaped the distribution of replication origins in the genomes of yeasts

    Newman, T. J., Mamun, M. A., Nieduszynski, C. A. & Blow, J. J. 2013 In : Nucleic Acids Research. n/a, 14 p.n/a

    Research output: Contribution to journalArticle

  52. Stochastic association of neighboring replicons creates replication factories in budding yeast

    Saner, N., Karschau, J., Natsume, T., Gierlinski, M., Retkute, R., Hawkins, M., Nieduszynski, C. A., Blow, J. J., de Moura, A. P. S. & Tanaka, T. U. 2013 In : Journal of Cell Biology. 202, 7, p. 1001-1012 12 p.

    Research output: Contribution to journalArticle

  53. Structural biology: Pivotal findings for a transcription machine

    Zomerdijk, J. 2013 In : Nature. 502, 7473, p. 629-630 2 p.

    Research output: Contribution to journalArticle

  54. TfR1 interacts with the IKK complex and is involved in IKK-NF-kappaB signalling

    Kenneth, N. S., Mudie, S., Naron, S. & Rocha, S. 2013 In : Biochemical Journal. 449, p. 275-284

    Research output: Contribution to journalArticle

  55. The amidation step of Diphthamide biosynthesis in yeast requires DPH6, a gene identified through mining the DPH1-DPH5 interaction network

    Uthman, S., Baer, C., Scheidt, V., Liu, S., Ten Have, S., Giorgini, F., Stark, M. J. R. & Schaffrath, R. 2013 In : PLoS Genetics. 9, 2, e1003334

    Research output: Contribution to journalArticle

  56. The NM23-H1/H2 homolog NDK-1 is required for full activation of Ras signaling in C. elegans

    Masoudi, N., Fancsalszky, L., Pourkarimi, E., Vellai, T., Alexa, A., Reményi, A., Gartner, A., Mehta, A. & Takács-Vellai, K. 2013 In : Development. 140, 16, p. 3486-3495 10 p.

    Research output: Contribution to journalArticle

  57. Ube2W conjugates ubiquitin to α-amino groups of protein N-termini

    Tatham, M. H., Plechanovova, A., Jaffray, E. G., Salmen, H. & Hay, R. T. 2013 In : Biochemical Journal. 453, 1, p. 137-145 9 p.

    Research output: Contribution to journalArticle

  58. Ubiquitylation-dependent localization of PLK1 in mitosis

    Beck, J., Maerki, S., Posch, M., Metzger, T., Persaud, A., Scheel, H., Hofmann, K., Rotin, D., Pedrioli, P., Swedlow, J. R., Peter, M. & Sumara, I. 2013 In : Nature Cell Biology. 15, 4, p. 430-439 10 p.

    Research output: Contribution to journalArticle

  59. Heterologous SUMO-2/3-Ubiquitin Chains Optimize IκBα Degradation and NF-κB Activity

    Aillet, F., Lopitz-Otsoa, F., Egaña, I., Hjerpe, R., Fraser, P., Hay, R. T., Rodriguez, M. S. & Lang, V. 20 Dec 2012 In : PLoS ONE. 7, 12, e51672

    Research output: Contribution to journalArticle

  60. Structural plasticity of histones H3–H4 facilitates their allosteric exchange between RbAp48 and ASF1

    Zhang, W., Yyl, M., Ward, R., Sobott, F., Maman, J., Murthy, A., Watson, A., Fedorov, O., Bowman, A., Owen-Hughes, T., El Mkami, H., Murzina, N., Norman, D. G. & Laue, E. 25 Nov 2012 In : Nature Structural & Molecular Biology. 20, 1, p. 29-35

    Research output: Contribution to journalArticle

  61. Dormant Origins, the Licensing Checkpoint, and the Response to Replicative Stresses

    McIntosh, D. & Blow, J. J. Oct 2012 In : Cold spring harbor perspectives in biology. 4, 10, 10 p.012955

    Research output: Contribution to journalArticle

  62. Family with Sequence Similarity 60A (FAM60A) Protein Is a Cell Cycle-fluctuating Regulator of the SIN3-HDAC1 Histone Deacetylase Complex

    Munoz, I. M., Macartney, T., Sanchez-Pulido, L., Ponting, C. P., Rocha, S. & Rouse, J. 21 Sep 2012 In : Journal of Biological Chemistry. 287, 39, p. 32346-53 8 p.

    Research output: Contribution to journalArticle

  63. The control of cell energy metabolism by NF-j B transcription factors

    Mauro, C., Leow, S. C., Anso, E., Rocha, S., Thotakura, A. K., Tornatore, L., Moretti, M., De Smaele, E., Beg, A. A., Tergaonkar, V., Chandel, N. S. & Franzoso, G. Sep 2012 In : Immunology. 137, S1, p. 19 1 p.

    Research output: Contribution to journalMeeting abstract

  64. Exploiting the MDM2-CK1α protein-protein interface to develop novel biologics that induce UBL-kinase-modification and inhibit cell growth

    Huart, A-S., MacLaine, N. J., Narayan, V. & Hupp, T. R. 20 Aug 2012 In : PLoS ONE. 7, 8, e43391

    Research output: Contribution to journalArticle

  65. Reanalysis of phosphoproteomics data uncovers ADP-ribosylation sites

    Matic, I., Ahel, I. & Hay, R. T. Aug 2012 In : Nature Methods. 9, 8, p. 771-772 2 p.

    Research output: Contribution to journalLetter

  66. ALDH2 mediates 5-nitrofuran activity in multiple species

    Zhou, L., Ishizaki, H., Spitzer, M., Taylor, K. L., Temperley, N. D., Johnson, S. L., Brear, P., Gautier, P., Zeng, Z., Mitchell, A., Narayan, V., McNeil, E. M., Melton, D. W., Smith, T. K., Tyers, M., Westwood, N. J. & Patton, E. E. 27 Jul 2012 In : Chemistry & Biology. 19, 7, p. 883-892 10 p.

    Research output: Contribution to journalArticle

  67. Influence of the nuclear membrane, active transport, and cell shape on the Hes1 and p53-Mdm2 pathways: insights from spatio-temporal modelling

    Sturrock, M., Terry, A. J., Xirodimas, D. P., Thompson, A. M. & Chaplain, M. A. J. Jul 2012 In : Bulletin of Mathematical Biology. 74, 7, p. 1531-1579 49 p.

    Research output: Contribution to journalArticle

  68. SUMO-targeted ubiquitin E3 ligase RNF4 is required for the response of human cells to DNA damage

    Yin, Y., Seifert, A., Chua, J. S., Maure, J-F., Golebiowski, F. & Hay, R. T. 1 Jun 2012 In : Genes & Development. 26, 11, p. 1196-1208 13 p.

    Research output: Contribution to journalArticle

  69. Preparation and use of Xenopus egg extracts to study DNA replication and chromatin associated proteins

    Gillespie, P. J., Gambus, A. & Blow, J. J. Jun 2012 In : Methods. 57, 2, p. 203-13 11 p.

    Research output: Contribution to journalArticle

  70. Quantitative proteomic analysis of yeast DNA replication proteins

    Kubota, T., Stead, D. A., Hiraga, S., ten Have, S. & Donaldson, A. D. Jun 2012 In : Methods (San Diego, Calif.). 57, 2, p. 196-202 7 p.

    Research output: Contribution to journalArticle

  71. Re-replication induced by geminin depletion occurs from G2 and is enhanced by checkpoint activation

    Klotz-Noack, K., McIntosh, D., Schurch, N., Pratt, N. & Blow, J. J. 15 May 2012 In : Journal of Cell Science. 125, 10, p. 2436-2445 10 p.

    Research output: Contribution to journalArticle

  72. A quantitative proteomic analysis of lung epithelial (A549) cells infected with 2009 pandemic influenza A virus using stable isotope labelling with amino acids in cell culture

    Dove, B. K., Surtees, R., Bean, T. J. H., Munday, D., Wise, H. M., Digard, P., Carroll, M. W., Ajuh, P., Barr, J. N. & Hiscox, J. A. May 2012 In : Proteomics. 12, 9, p. 1431-1436 6 p.

    Research output: Contribution to journalArticle

  73. The p53 isoforms are differentially modified by Mdm2

    Camus, S., Menendez, S., Fernandes, K., Kua, N., Liu, G., Xirodimas, D. P., Lane, D. P. & Bourdon, J-C. 15 Apr 2012 In : Cell Cycle. 11, 8, p. 1646-1655 10 p.

    Research output: Contribution to journalArticle

  74. Human box C/D snoRNA processing conservation across multiple cell types

    Scott, M. S., Ono, M., Yamada, K., Endo, A., Barton, G. J. & Lamond, A. I. Apr 2012 In : Nucleic Acids Research. 40, 8, p. 3676-3688 13 p.

    Research output: Contribution to journalArticle

  75. Micrococcal Nuclease Does Not Substantially Bias Nucleosome Mapping

    Allan, J., Fraser, R. M., Owen-Hughes, T. & Keszenman-Pereyra, D. 30 Mar 2012 In : Journal of Molecular Biology. 417, 3, p. 152-164 13 p.

    Research output: Contribution to journalArticle

  76. Diphtheria disease and genes involved in formation of diphthamide, key effector of the diphtheria toxin

    Uthman, S., Liu, S., Giorgini, F., Stark, M. J. R., Costanzo, M. & Schaffrath, R. 21 Mar 2012 Insight and Control of Infectious Disease in Global Scenario . Roy, P. K. (ed.). Croatia: In Tech - Open Access Publisher, p. 333-357 25 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  77. The ubiquitin E1 enzyme Ube1 mediates NEDD8 activation under diverse stress conditions

    Leidecker, O., Matic, I., Mahata, B., Pion, E. & Xirodimas, D. P. 15 Mar 2012 In : Cell Cycle. 11, 6, p. 1142-1150 9 p.

    Research output: Contribution to journalArticle

  78. Polypyrimidine Tract Binding Protein (hnRNP I) Is Possibly a Conserved Modulator of miRNA-Mediated Gene Regulation

    Engels, B., Jannot, G., Remenyi, J., Simard, M. J. & Hutvagner, G. 9 Mar 2012 In : PLoS ONE. 7, 3, p. - 11 p.e33144

    Research output: Contribution to journalArticle

  79. A quantitative spatial proteomics analysis of proteome turnover in human cells

    Boisvert, F-M., Ahmad, Y., Gierlinski, M., Charrière, F., Lamont, D., Scott, M., Barton, G. & Lamond, A. I. 1 Mar 2012 In : Molecular & Cellular Proteomics. 11, 3, M111.011429

    Research output: Contribution to journalArticle

  80. Advancing cell biology through proteomics in space and time (PROSPECTS)

    Lamond, A. I., Uhlen, M., Horning, S., Makarov, A., Robinson, C. V., Serrano, L., Hartl, F. U., Baumeister, W., Werenskiold, A. K., Andersen, J. S., Vorm, O., Linial, M., Aebersold, R. & Mann, M. 1 Mar 2012 In : Molecular & Cellular Proteomics. 11, 3

    Research output: Contribution to journalArticle

  81. Characterization of MRFAP1 turnover and interactions downstream of the NEDD8 pathway

    Larance, M., Kirkwood, K. J., Xirodimas, D. P., Lundberg, E., Uhlen, M. & Lamond, A. I. 1 Mar 2012 In : Molecular & Cellular Proteomics. 11, 3

    Research output: Contribution to journalArticle

  82. OMERO: flexible, model-driven data management for experimental biology

    Allan, C. , Burel, J-M. , Moore, J. , Blackburn, C. , Linkert, M. , Loynton, S. , MacDonald, D. , Moore, W. J. , Neves, C. , Patterson, A. , Porter, M. , Tarkowska, A. , Loranger, B. , Avondo, J. , Lagerstedt, I. , Lianas, L. , Leo, S. , Hands, K. , Hay, R. T. , Patwardhan, A. & 4 others Best, C., Kleywegt, G. J., Zanetti, G. & Swedlow, J. R. 1 Mar 2012 In : Nature Methods. 9, 3, p. 245-253 9 p.

    Research output: Contribution to journalArticle

  83. Systematic analysis of protein pools, isoforms, and modifications affecting turnover and subcellular localization

    Ahmad, Y., Boisvert, F-M., Lundberg, E., Uhlen, M. & Lamond, A. I. 1 Mar 2012 In : Molecular & Cellular Proteomics. 11, 3

    Research output: Contribution to journalArticle

  84. Tratamiento exitoso de la necrosis isquémica del glande poscircuncisión con oxígeno hiperbárico y pentoxifilina intravenosa

    Elemen, L., Akay, A., Topçu, K. & Gürcan, N. I. 1 Mar 2012 In : Actas Urologicas Espanolas. 36, 3, p. 200-201 2 p.

    Research output: Contribution to journalArticle

  85. Evidence that CED-9/Bcl2 and CED-4/Apaf-1 localization is not consistent with the current model for C. elegans apoptosis induction

    Pourkarimi, E., Greiss, S. & Gartner, A. Mar 2012 In : Cell Death & Differentiation. 19, 3, p. 406-415 10 p.

    Research output: Contribution to journalArticle

  86. Scale integration: the structure and dynamics of macromolecular assemblies, cells and tissues

    Swedlow, J. & Danuser, G. 1 Feb 2012 In : Current Opinion in Cell Biology. 24, 1, p. 1-3 3 p.

    Research output: Contribution to journalArticle

  87. The dynamics of replication licensing in live Caenorhabditis elegans embryos

    Sonneville, R., Querenet, M., Craig, A., Gartner, A. & Blow, J. J. 23 Jan 2012 In : Journal of Cell Biology. 196, 2, p. 233-246 14 p.

    Research output: Contribution to journalArticle

  88. The shark in us: Learning about the evolution of the p53 regulatory circuit

    Rutkowski, R. & Gartner, A. 15 Jan 2012 In : Cell Cycle. 11, 2, p. 216-217 2 p.

    Research output: Contribution to journalComment/debate

  89. Detection and quantitation of SUMO chains by mass spectrometry

    Matic, I. & Hay, R. T. 1 Jan 2012 Ubiquitin family modifiers and the proteasome: reviews and protocols. Dohmen, R. J. & Scheffner, M. (eds.). Humana Press, p. 239-247 9 p. (Methods in molecular biology).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

  90. Innovation in biological microscopy: current status and future directions

    Swedlow, J. R. 1 Jan 2012 In : BioEssays.

    Research output: Contribution to journalArticle

  91. Making sense of transcribing chromatin

    Owen-Hughes, T. & Gkikopoulos, T. 1 Jan 2012 In : Current Opinion in Cell Biology.

    Research output: Contribution to journalArticle

  92. Modulation of activation-associated host cell gene expression by the apicomplexan parasite Theileria annulata

    Durrani, Z., Weir, W., Pillai, S., Shiels, B. & Kinnaird, J. 1 Jan 2012 In : Cellular Microbiology.

    Research output: Contribution to journalArticle

  93. Software tools, data structures, and interfaces for microscope imaging

    Stuurman, N. & Swedlow, J. R. 1 Jan 2012 In : Cold Spring Harbor Protocols. 7, 1, p. 50-61 12 p.

    Research output: Contribution to journalArticle

  94. Chromatin as an oxygen sensor and active player in the hypoxia response

    Melvin, A. & Rocha, S. Jan 2012 In : Cellular Signalling. 24, 1, p. 35-43 9 p.

    Research output: Contribution to journalScientific review

  95. hCINAP is an atypical mammalian nuclear adenylate kinase with an ATPase motif: Structural and functional studies

    Drakou, C. E., Malekkou, A., Hayes, J. M., Lederer, C. W., Leonidas, D. D., Oikonomakos, N. G., Lamond, A. I., Santama, N. & Zographos, S. E. Jan 2012 In : Proteins: Structure, Function, and Bioinformatics. 80, 1, p. 206-220 15 p.

    Research output: Contribution to journalArticle

  96. Why are patients with small cell lung cancer (SCLC) not given chemotherapy?

    Khan, M. I., Brown, E. J., Lord, H., Allan, C., Sim, L., Buckle, F. & Rankin, E. M. Jan 2012 In : Lung Cancer. 75, p. S59-S59 1 p.

    Research output: Contribution to journalArticle

  97. ATP-independent cooperative binding of yeast Isw1a to bare and nucleosomal DNA

    De Cian, A., Praly, E., Ding, F., Singh, V., Lavelle, C., Le Cam, E., Croquette, V., Pietrement, O. & Bensimon, D. 2012 In : PLoS ONE. 7, 2, p. - 13 p.e31845

    Research output: Contribution to journalArticle

  98. Cnn1 inhibits the interactions between the KMN complexes of the yeast kinetochore

    Bock, L. J., Pagliuca, C., Alfieri, C., Golfieri, C., Dal Maschio, M., De Wulf, P., Kobayashi, N., Oku, Y., Tanaka, T. U., Grove, R. A., Shrestha, K., Hazbun, T. R., Oldani, A. & Bermejo, R. 2012 In : Nature Cell Biology. 14, 6, p. 614-624 11 p.

    Research output: Contribution to journalArticle

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