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Gene Regulation & Expression

  1. Mechanisms mitigating problems with multiple kinetochores on one microtubule in early mitosis

    Yue, Z., Komoto, S., Gierlinski, M., Pasquali, D., Kitamura, E. & Tanaka, T. U. 25 May 2017 In : Journal of Cell Science. p. 2266-2276 11 p.

    Research output: Contribution to journalArticle

  2. Molecular mechanisms facilitating the initial kinetochore encounter with spindle microtubules

    Vasileva, V., Gierlinski, M., Yue, Z., O'Reilly, N., Kitamura, E. & Tanaka, T. U. 26 Apr 2017 In : Journal of Cell Biology. 216, 6, p. 1809-1822 14 p.

    Research output: Contribution to journalArticle

  3. The Open Microscopy Environment: Open image informatics for the biological sciences

    Blackburn, C. , Allan, C. , Besson, S. , Burel, J. M. , Carroll, M. , Ferguson, R. K. , Flynn, H. , Gault, D. , Gillen, K. , Leigh, R. , Leo, S. , Li, S. , Lindner, D. , Linkert, M. , Moore, J. , Moore, W. J. , Ramalingam, B. , Rozbicki, E. , Rustici, G. , Tarkowska, A. & 3 others Walczysko, P., Williams, E. & Swedlow, J. R. 26 Jul 2016 Software and Cyberinfrastructure for Astronomy IV. SPIE-International Society for Optical Engineering, Vol. 9913, 991324

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  4. Establishment of a High-throughput Setup for Screening Small Molecules That Modulate c-di-GMP Signaling in Pseudomonas aeruginosa

    Rugjee, K. N., An, S. & Ryan, R. P. 30 Jun 2016 In : JoVE: Journal of Visualized Experiments. 112, 7 p., e54115

    Research output: Contribution to journalArticle

  5. The chromatin remodelling enzymes SNF2H and SNF2L position nucleosomes adjacent to CTCF and other transcription

    Wiechens, N., Singh, V., Gkikopoulos, T., Schofield, P., Rocha, S. & Owen-Hughes, T. 28 Mar 2016 In : PLoS Genetics.

    Research output: Contribution to journalArticle

  6. Metadata management for high content screening in OMERO

    Li, S. , Besson, S. , Blackburn, C. , Carroll, M. , Ferguson, R. K. , Flynn, H. , Gillen, K. , Leigh, R. , Lindner, D. , Linkert, M. , Moore, W. J. , Ramalingam, B. , Rozbicki, E. , Rustici, G. , Tarkowska, A. , Walczysko, P. , Williams, E. , Allan, C. , Burel, J. M. , Moore, J. & 1 others Swedlow, J. R. 1 Mar 2016 In : Methods. 96, p. 27-32 6 p.

    Research output: Contribution to journalArticle

  7. NF-κB and HIF crosstalk in immune responses

    D'Ignazio, L., Bandarra, D. & Rocha, S. Feb 2016 In : FEBS Journal. 283, 3, p. 413-424 12 p.

    Research output: Contribution to journalArticle

  8. The NEDD8 inhibitor MLN4924 increases the size of the nucleolus and activates p53 through the ribosomal-Mdm2 pathway

    Bailly, A., Perrin, A., Bou Malhab, L. J., Pion, E., Larance, M., Nagala, M., Smith, P., O'Donohue, M-F., Gleizes, P-E., Zomerdijk, J., Lamond, A. I. & Xirodimas, D. P. 28 Jan 2016 In : Oncogene. 35, 4, p. 415-426 12 p.

    Research output: Contribution to journalArticle

  9. PML isoforms IV and V contribute to adenovirus-mediated oncogenic transformation by functionally inhibiting the tumor-suppressor p53

    Wimmer, P., Berscheminski, J., Blanchette, P., Groitl, P., Branton, P. E., Hay, R. T., Dobner, T. & Schreiner, S. 7 Jan 2016 In : Oncogene. 35, p. 69-82 14 p.

    Research output: Contribution to journalArticle

  10. CDK-dependent phosphorylation of PHD1 on serine 130 alters its substrate preference in cells

    Ortmann, B., Bensaddek, D., Carvalhal, S., Moser, S. C., Mudie, S., Griffis, E. R., Swedlow, J. R., Lamond, A. I. & Rocha, S. Jan 2016 In : Journal of Cell Science. 129, 1, p. 191-205 15 p.

    Research output: Contribution to journalArticle

  11. Collaborator of alternative reading frame protein (CARF) regulates early processing of pre-ribosomal RNA by retaining XRN2 (5′-3′ exoribonuclease) in the nucleoplasm

    Sato, S., Ishikawa, H., Yoshikawa, H., Izumikawa, K., Simpson, R. J. & Takahashi, N. 2 Dec 2015 In : Nucleic Acids Research. 43, 21, p. 10397-10410 14 p.

    Research output: Contribution to journalArticle

  12. Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment

    Gierlinski, M., Cole, C., Schofield, P., Schurch, N. J., Sherstnev, A., Singh, V., Wrobel, N., Gharbi, K., Simpson, G., Owen-Hughes, T., Blaxter, M. & Barton, G. J. 15 Nov 2015 In : Bioinformatics. 31, 22, p. 3625-3630 6 p.

    Research output: Contribution to journalArticle

  13. The nucleoporin ALADIN regulates Aurora A localization to ensure robust mitotic spindle formation

    Carvalhal, S., Abreu Ribeiro, S., Arocena, M., Kasciukovic, T., Temme, A., Koehler, K., Huebner, A. & Griffis, E. R. 1 Oct 2015 In : Molecular Biology of the Cell. 26, 19, p. 3424-3438 15 p.

    Research output: Contribution to journalArticle

  14. Screen for multi-SUMO-binding proteins reveals a multi-SIM-binding mechanism for recruitment of the transcriptional regulator ZMYM2 to chromatin

    Aguilar-Martinez, E., Chen, X., Webber, A., Mould, A. P., Seifert, A., Hay, R. T. & Sharrocks, A. D. 1 Sep 2015 In : Proceedings of the National Academy of Sciences of the United States of America. 112, 35, p. E4854-E4863 10 p.

    Research output: Contribution to journalArticle

  15. Cezanne regulates E2F1-dependent HIF2α expression

    Moniz, S., Bandarra, D., Biddlestone, J., Campbell, K. J., Komander, D., Bremm, A. & Rocha, S. 15 Aug 2015 In : Journal of Cell Science. 128, 16, p. 3082-3093 12 p., JOCES/2015/168864

    Research output: Contribution to journalArticle

  16. Discovery of an unconventional centromere in budding yeast redefines evolution of point centromeres

    Kobayashi, N., Suzuki, Y., Schoenfeld, L., Müller, C., Nieduszynski, C., Wolfe, K. & Tanaka, T. 3 Aug 2015 In : Current Biology. 25, 15, p. 2026-2033 8 p.

    Research output: Contribution to journalArticle

  17. Structural basis for the RING catalyzed synthesis of K63 linked ubiquitin chains

    Branigan, E., Plechanovova, A., Jaffray, E. G., Naismith, J. H. & Hay, R. T. Aug 2015 In : Nature Structural & Molecular Biology. 22, 8, p. 597-602 6 p.

    Research output: Contribution to journalArticle

  18. Both Chromosome Decondensation and Condensation Are Dependent on DNA Replication in C.elegans Embryos

    Sonneville, R., Craig, G., Labib, K., Gartner, A. & Blow, J. J. 21 Jul 2015 In : Cell Reports. 12, 3, p. 405-417 13 p.

    Research output: Contribution to journalArticle

  19. Proteotoxic stress reprograms the chromatin landscape of SUMO modification

    Seifert, A., Schofield, P., Barton, G. & Hay, R. 7 Jul 2015 In : Science Signaling. 8, 384, p. rs7 14 p.

    Research output: Contribution to journalArticle

  20. Global proteomics analysis of the response to starvation in C. elegans

    Larance, M., Pourkarimi, E., Wang, B., Brenes Murillo, A., Kent, R., Lamond, A. I. & Gartner, A. 1 Jul 2015 In : Molecular & Cellular Proteomics. 14, 7, p. 1989-2001 13 p.

    Research output: Contribution to journalArticle

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