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Gene Regulation and Expression

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  1. E3 Ubiquitin Ligase HOIP Attenuates Apoptotic Cell Death Induced by Cisplatin

    Mackay, C., Carroll, E., Ibrahim, A. F. M., Garg, A., Inman, G. J., Hay, R. T. & Alpi, A. F. 31 Mar 2014 In : Cancer Research.

    Research output: Contribution to journalArticle

  2. The histone chaperones Vps75 and Nap1 form ring-like, tetrameric structures in solution

    Bowman, A., Hammond, C. M., Stirling, A., Ward, R., Shang, W., El-Mkami, H., Robinson, D. A., Svergun, D. I., Norman, D. G. & Owen-Hughes, T. 31 Mar 2014 In : Nucleic Acids Research.

    Research output: Contribution to journalArticle

  3. Monitoring Keap1-Nrf2 interactions in single live cells

    Baird, L., Swift, S., Llères, D. & Dinkova-Kostova, A. T. 25 Mar 2014

    Research output: Contribution to journalArticle

  4. PML isoforms in response to arsenic: high-resolution analysis of PML body structure and degradation

    Hands, K. J., Cuchet-Lourenco, D., Everett, R. D. & Hay, R. T. 15 Jan 2014 In : Journal of Cell Science. 127, 2, p. 365-375 11 p.

    Research output: Contribution to journalArticle

  5. Grow₂: The HIF system, energy homeostasis and the cell cycle

    Moniz, S., Biddlestone, J. & Rocha, S. 10 Jan 2014 In : Histology and Histopathology.

    Research output: Contribution to journalArticle

  6. Xenopus Cdc7 executes its essential function early in S phase and is counteracted by checkpoint-regulated protein phosphatase 1

    Poh, W. T., Chadha, G. S., Gillespie, P. J., Kaldis, P. & Blow, J. J. Jan 2014 In : Open Biology. 4, 130138

    Research output: Contribution to journalArticle

  7. Phosphorylated DegU manipulates cell fate differentiation in the Bacillus subtilis biofilm

    Marlow, V. L., Porter, M., Hobley, L., Kiley, T. B., Swedlow, J. R., Davidson, F. A. & Stanley-Wall, N. R. Jan 2014 In : Journal of Bacteriology. 196, 1, p. 16-27 10 p.

    Research output: Contribution to journalArticle

  8. The prevalence and origin of exoprotease producing cells in the Bacillus subtilis biofilm

    Marlow, V. L., Cianfanelli, F. R., Porter, M., Cairns, L. S., Dale, J. K. & Stanley-Wall, N. R. Jan 2014 In : Microbiology-SGM. 160, 1, p. 56-66 11 p.

    Research output: Contribution to journalArticle

  9. The double loop mattress suture

    Biddlestone, J., Samuel, M., Creagh, T. & Ahmad, T. 2014 In : Wound Repair and Regeneration.

    Research output: Contribution to journalArticle

  10. Characterization of Native Protein Complexes and Protein Isoform Variation Using Size-fractionation-based Quantitative Proteomics

    Kirkwood, K. J., Ahmad, Y., Larance, M. & Lamond, A. I. 1 Dec 2013 In : Molecular & Cellular Proteomics. 12, 12, p. 3851-3873 23 p.

    Research output: Contribution to journalArticle

  11. Three wise centromere functions: see no error, hear no break, speak no delay

    Tanaka, T. U., Clayton, L. & Natsume, T. Dec 2013 In : EMBO Reports. 14, 12, p. 1073-1083 11 p.

    Research output: Contribution to journalScientific review

  12. Stress Response: Anything that Doesn't Kill You Makes You Stronger

    Gartner, A. & Akay, A. 18 Nov 2013 In : Current Biology. 23, 22, p. R1012-R1014 3 p.

    Research output: Contribution to journalArticle

  13. A comparison of in vitro nucleosome positioning mapped with chicken, frog and a variety of yeast core histones

    Allan, J., Fraser, R. M., Owen-Hughes, T., Docherty, K. & Singh, V. 15 Nov 2013 In : Journal of Molecular Biology. 425, 22, p. 4206-4222 17 p.

    Research output: Contribution to journalArticle

  14. Tmem79/Matt is the matted mouse gene and is a predisposing gene for atopic dermatitis in human subjects

    Madhok, V. B. & 33 others Saunders, S. P., Goh, C. S. M., Brown, S. J., Palmer, C. N. A., Porter, R. M., Cole, C., Campbell, L. E., Gierlinski, M., Barton, G. J., Schneider, G., Balmain, A., Prescott, A. R., Weidinger, S., Baurecht, H., Kabesch, M., Gieger, C., Lee, Y-A., Tavendale, R., Mukhopadhyay, S., Turner, S. W., Sullivan, F. M., Relton, C., Burn, J., Meggitt, S., Smith, C. H., Allen, M. A., Barker, J. N. W. N., Reynolds, N. J., Cordell, H. J., Irvine, A. D., McLean, W. H. I., Sandilands, A. & Fallon, P. G. Nov 2013 In : Journal of Allergy and Clinical Immunology. 132, 5, p. 1121-1129 9 p.

    Research output: Contribution to journalArticle

  15. RNA-binding protein GLD-1/quaking genetically interacts with the mir-35 and the let-7 miRNA pathways in Caenorhabditis elegans

    Akay, A., Craig, A., Lehrbach, N., Larance, M., Pourkarimi, E., Wright, J. E., Lamond, A., Miska, E. & Gartner, A. Nov 2013 In : Open Biology. 3, 130151

    Research output: Contribution to journalArticle

  16. The Geminin and Idas coiled coils preferentially form a heterodimer that inhibits Geminin function in DNA replication licensing

    Caillat, C., Pefani, D-E., Gillespie, P. J., Taraviras, S., Blow, J. J., Lygerou, Z. & Perrakis, A. Nov 2013 In : Journal of Biological Chemistry. 288, 44, p. 31624-31634 11 p.

    Research output: Contribution to journalArticle

  17. Structural biology: Pivotal findings for a transcription machine

    Zomerdijk, J. 31 Oct 2013 In : Nature. 502, 7473, p. 629-630 2 p.

    Research output: Contribution to journalArticle

  18. Bod1 regulates protein phosphatase 2A at mitotic kinetochores

    Porter, I., Schleicher, K., Porter, M. & Swedlow, J. 25 Oct 2013 In : Nature Communications. 4, 2677

    Research output: Contribution to journalArticle

  19. PHD1 links cell-cycle progression to oxygen sensing through hydroxylation of the centrosomal protein Cep192

    Moser, S. C., Bensaddek, D., Ortmann, B., Maure, J-F., Mudie, S., Blow, J. J., Lamond, A. I., Swedlow, J. R. & Rocha, S. 26 Aug 2013 In : Developmental Cell. 26, 4, p. 381-392 12 p.

    Research output: Contribution to journalArticle

  20. Plant SILAC: stable-isotope labelling with amino acids of Arabidopsis seedlings for quantitative proteomics

    Lewandowska, D., ten Have, S., Hodge, K., Tillemans, V., Lamond, A. I. & Brown, J. W. S. 20 Aug 2013 In : PLoS ONE. 8, 8, e72207

    Research output: Contribution to journalArticle

  21. Locus-specific proteomics by TChP: targeted chromatin purification

    Pourfarzad, F., Aghajanirefah, A., de Boer, E., Ten Have, S., Bryn van Dijk, T., Kheradmandkia, S., Stadhouders, R., Thongjuea, S., Soler, E., Gillemans, N., von Lindern, M., Demmers, J., Philipsen, S. & Grosveld, F. 15 Aug 2013 In : Cell Reports. 4, 3, p. 589-600 12 p.

    Research output: Contribution to journalArticle

  22. BslA is a self-assembling bacterial hydrophobin that coats the Bacillus subtilis biofilm

    Hobley, L., Ostrowski, A., Rao, F. V., Bromley, K. M., Porter, M., Prescott, A. R., Macphee, C. E., van Aalten, D. M. F. & Stanley-Wall, N. R. 13 Aug 2013 In : Proceedings of the National Academy of Sciences of the United States of America. 110, 33, p. 13600-13605 6 p.

    Research output: Contribution to journalArticle

  23. Cleaning up the masses: Exclusion lists to reduce contamination with HPLC-MS/MS

    Hodge, K., Ten Have, S., Hutton, L. & Lamond, A. I. 2 Aug 2013 In : Journal of Proteomics. 88, p. 92-103 12 p.

    Research output: Contribution to journalArticle

  24. Clinical proteomics stretch goals: EuPA 2012 roundtable report

    O'Neil, S. E., Palviainen, M. J., Ten Have, S., Filiou, M., Gonzalez, A., Hodge, K., Surinova, S., Penque, D. & Baker, M. S. 2 Aug 2013 In : Journal of Proteomics. 88, p. 37-40 4 p.

    Research output: Contribution to journalArticle

  25. PROTEINCHALLENGE: Crowd sourcing in proteomics analysis and software development

    Martin, S. F., Falkenberg, H., Dyrlund, T. F., Khoudoli, G. A., Mageean, C. J. & Linding, R. 2 Aug 2013 In : Journal of Proteomics. 88, p. 41-46 6 p.

    Research output: Contribution to journalArticle

  26. Combinatorial regulation of meiotic holliday junction resolution in C. elegans by HIM-6 (BLM) helicase, SLX-4, and the SLX-1, MUS-81 and XPF-1 nucleases

    Agostinho, A., Meier, B., Sonneville, R., Jagut, M., Woglar, A., Blow, J., Jantsch, V. & Gartner, A. 18 Jul 2013 In : PLoS Genetics. 9, 7, e1003591

    Research output: Contribution to journalArticle

  27. Kinetochores coordinate pericentromeric cohesion and early DNA replication by Cdc7-Dbf4 kinase recruitment

    Natsume, T., Müller, C. A., Katou, Y., Retkute, R., Gierlinski, M., Araki, H., Blow, J. J., Shirahige, K., Nieduszynski, C. A. & Tanaka, T. U. 6 Jun 2013 In : Molecular Cell. 50, 5, p. 661-674 14 p.

    Research output: Contribution to journalArticle

  28. Insights into Diphthamide, key Diphtheria Toxin effector

    Abdel-Fattah, W., Scheidt, V., Uthman, S., Stark, M. J. R. & Schaffrath, R. 3 May 2013 In : Toxins. 5, 5, p. 958-968 11 p.

    Research output: Contribution to journalArticle

  29. Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease

    Sharifi, R. , Morra, R. , Appel, C. D. , Tallis, M. , Chioza, B. , Jankevicius, G. , Simpson, M. A. , Matic, I. , Ozkan, E. , Golia, B. , Schellenberg, M. J. , Weston, R. , Williams, J. G. , Rossi, M. N. , Galehdari, H. , Krahn, J. , Wan, A. , Trembath, R. C. , Crosby, A. H. , Ahel, D. & 5 others Hay, R., Ladurner, A. G., Timinszky, G., Williams, R. S. & Ahel, I. 2 May 2013 In : EMBO Journal. 32, 9, p. 1225-1237 13 p.

    Research output: Contribution to journalArticle

  30. miR-132/212 knockout mice reveal roles for these miRNAs in regulating cortical synaptic transmission and plasticity

    Remenyi, J., van den Bosch, M. W. M., Palygin, O., Mistry, R. B., McKenzie, C., Macdonald, A., Hutvagner, G., Arthur, J. S. C., Frenguelli, B. G. & Pankratov, Y. 26 Apr 2013 In : PLoS ONE. 8, 4, 14 p.e62509

    Research output: Contribution to journalArticle

  31. Analysis of human protein replacement stable cell lines established using snoMEN-PR vector

    Ono, M., Yamada, K., Endo, A., Avolio, F. & Lamond, A. I. 25 Apr 2013 In : PLoS ONE. 8, 4, 12 p.e62305

    Research output: Contribution to journalArticle

  32. The P-body component USP52/PAN2 is a novel regulator of HIF1A mRNA stability

    Bett, J. S., Ibrahim, A. F. M., Garg, A. K., Kelly, V., Pedrioli, P., Rocha, S. & Hay, R. T. 15 Apr 2013 In : Biochemical Journal. 451, 2, p. 185-194 10 p.BJ20130026

    Research output: Contribution to journalArticle

  33. Correlative imaging of fluorescent proteins in resin-embedded plant material

    Bell, K., Mitchell, S., Paultre, D., Posch, M. & Oparka, K. Apr 2013 In : Plant Physiology. 161, 4, p. 1595-1603 9 p.

    Research output: Contribution to journalArticle

  34. Decoding the SUMO signal

    Hay, R. T. Apr 2013 In : Biochemical Society Transactions. 41, 2, p. 463-473 11 p.

    Research output: Contribution to journalArticle

  35. Degradation characteristics of the major PML isoforms in response to arsenic

    Hands, K. J., Cuchet-Lourenco, D., Everett, R. D. & Hay, R. T. Apr 2013 In : British Journal of Haematology. 161, Suppl. 1, p. 17 1 p.35

    Research output: Contribution to journalMeeting abstract

  36. Small RNAs derived from the 5' end of tRNA can inhibit protein translation in human cells

    Sobala, A. & Hutvagner, G. Apr 2013 In : RNA Biology. 10, 4, p. 553-563 11 p.

    Research output: Contribution to journalArticle

  37. Topoisomerase IIα promotes activation of RNA polymerase i transcription by facilitating pre-initiation complex formation

    Ray, S., Panova, T., Miller, G., Volkov, A., Porter, A. C. G., Russell, J., Panov, K. I. & Zomerdijk, J. C. B. M. 19 Mar 2013 In : Nature Communications. 4, 1598

    Research output: Contribution to journalArticle

  38. Global subcellular characterization of protein degradation using quantitative proteomics

    Larance, M., Ahmad, Y., Kirkwood, K. J., Ly, T. & Lamond, A. I. Mar 2013 In : Molecular & Cellular Proteomics. 12, 3, p. 638-650 13 p.

    Research output: Contribution to journalArticle

  39. Identification and functional characterization of FMN2: a regulator of the cyclin-dependent kinase Inhibitor p21

    Yamada, K., Ono, M., Perkins, N. D., Rocha, S. & Lamond, A. I. Mar 2013 In : Molecular Cell. 49, 5, p. 922-933 12 p.

    Research output: Contribution to journalArticle

  40. DNA-binding regulates site-specific ubiquitination of IRF-1

    Landré, V., Pion, E., Narayan, V., Xirodimas, D. P. & Ball, K. L. 1 Feb 2013 In : Biochemical Journal. 449, 3, p. 707-717 11 p.

    Research output: Contribution to journalArticle

  41. Web-based visualisation and analysis of 3D electron-microscopy data from EMDB and PDB

    Lagerstedt, I., Moore, W. J., Patwardhan, A., Sanz-García, E., Best, C., Swedlow, J. R. & Kleywegt, G. J. 1 Jan 2013 In : Journal of Structural Biology. 184, 2, p. 173-181 9 p.

    Research output: Contribution to journalArticle

  42. A role for paralog-specific sumoylation in histone deacetylase 1 stability

    Citro, S., Jaffray, E., Hay, R. T., Seiser, C. & Chiocca, S. 2013 In : Journal of Molecular Cell Biology. 5, 6, p. 416-427 12 p.

    Research output: Contribution to journalArticle

  43. A sweet TET-a-tete-synergy of TET proteins and O-GlcNAc transferase in transcription

    Mariappa, D., Pathak, S. & van Aalten, D. M. F. 2013 In : EMBO Journal. 32, 5, p. 612-613 2 p.

    Research output: Contribution to journalEditorial

  44. CENP-A confers a reduction in height on octameric nucleosomes

    Miell, M. D. D., Barysz, H. M., Rappsilber, J., Allshire, R. C., Fuller, C. J., Straight, A. F., Guse, A., Downes, A. & Owen-Hughes, T. 2013 In : Nature Structural & Molecular Biology.

    Research output: Contribution to journalArticle

  45. Degradation characteristics of the major PML isoforms in response to arsenic

    Hands, K. J., Cuchet-Lourenco, D., Everett, R. D. & Hay, R. T. 2013

    Research output: Contribution to conferenceAbstract

  46. Esperanto for histones: CENP-A, not CenH3, is the centromeric histone H3 variant

    Earnshaw, W. C. , Allshire, R. C. , Black, B. E. , Bloom, K. , Salmon, E. D. , Brinkley, B. R. , Brown, W. , Cheeseman, I. M. , Choo, K. H. A. , Copenhaver, G. P. , DeLuca, J. G. , Luger, K. , Desai, A. , Oegema, K. , Cleveland, D. W. , Diekmann, S. , Erhardt, S. , Fitzgerald-Hayes, M. , Foltz, D. , Fukagawa, T. & 37 others Gassmann, R., Maiato, H., Gerlich, D. W., Glover, D. M., Gorbsky, G. J., Harrison, S. C., Heun, P., Hirota, T., Jansen, L. E. T., Karpen, G., Kops, G. J. P. L., Lampson, M. A., Lens, S. M., Losada, A., Maddox, P. S., Margolis, R. L., Masumoto, H., McAinsh, A. D., Mellone, B. G., O'Neill, R. J., Meraldi, P., Musacchio, A., Scott, K. C., Sullivan, B. A., Straight, A. F., Stukenberg, P. T., Sullivan, K. F., Sunkel, C. E., Swedlow, J. R., Walczak, C. E., Warburton, P. E., Westermann, S., Willard, H. F., Wordeman, L., Yanagida, M., Yen, T. J. & Yoda, K. 2013 In : Chromosome Research. 21, 2, p. 101-106 6 p.

    Research output: Contribution to journalArticle

  47. Germ cell apoptosis and DNA damage responses

    Bailly, A. & Gartner, A. 2013 Germ Cell Development in C. elegans. Schedl, T. (ed.). New York: Springer, Vol. 757, p. 249-276 28 p. (Advances in Experimental Medicine and Biology).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  48. Mechanisms and functions of ATP-dependent chromatin-remodeling enzymes

    Narlikar, G. J., Sundaramoorthy, R. & Owen-Hughes, T. 2013 In : Cell. 154, 3, p. 490-503 14 p.

    Research output: Contribution to journalArticle

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