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Plant Sciences

  1. The genome of the yellow potato cyst nematode Globodera rostochiensis reveals insights into the basis of parasitism and virulence

    Eves-van den Akker, S. , Laetsch, D. R. , Thorpe, P. , Lilley, C. J. , Danchin, E. G. J. , Da Rocha, M. , Rancurel, C. , Holroyd, N. E. , Cotton, J. , Szitenberg, A. , Grenier, E. , Montarry, J. , Mimee, B. , Duceppe, M-O. , Boyes, I. , Marvin, J. M. C. , Jones, L. M. , Yusup, H. B. , Lafond-Lapalme, J. & 15 others Esquibet, M., Sabeh, M., Rott, M., Overmars, H., Finkers-Tomczak, A., Smant, G., Koutsovoulos, G., Blok, V., Mantelin, S., Cock, P. J. A., Phillips, W., Henrissat, B., Urwin, P. E., Blaxter, M. & Jones, J. T. 10 Jun 2016 In : Genome Biology. 17, 23 p., 124

    Research output: Contribution to journalArticle

  2. Comparative transcriptomics and proteomics of three different aphid species identifies core and diverse effector sets

    Thorpe, P., Cock, P. J. A. & Bos, J. 2 Mar 2016 In : BMC Genomics. 17, 1, 172

    Research output: Contribution to journalArticle

  3. A Phytophthora infestans RXLR effector targets plant PP1c isoforms that promote late blight disease

    Boevink, P. C., Wang, X., McLellan, H., He, Q., Naqvi, S., Armstrong, M. R., Zhang, W., Hein, I., Gilroy, E. M., Tian, Z. & Birch, P. R. J. 29 Jan 2016 In : Nature Communications. 7, 10311

    Research output: Contribution to journalArticle

  4. Pluses and minuses of ammonium and nitrate uptake and assimilation by phytoplankton and implications for productivity and community composition, with emphasis on nitrogen-enriched conditions

    Glibert, P. M., Wilkerson, F. P., Dugdale, R. C., Raven, J. A., Dupont, C. L., Leavitt, P. R., Parker, A. E., Burkholder, J. M. & Kana, T. M. Jan 2016 In : Limnology and Oceanography. 61, 1, p. 165-197 33 p., 10203

    Research output: Contribution to journalArticle

  5. The ins and outs of CO2

    Raven, J. A. & Beardall, J. Jan 2016 In : Journal of Experimental Botany. 67, 1, p. 1-13 13 p.

    Research output: Contribution to journalArticle

  6. Land use and soil factors affecting accumulation of phosphorus species in temperate soils

    Stutter, M. I., Shand, C. A., George, T. S., Blackwell, M. S. A., Dixon, L., Bol, R., MacKay, R. L., Richardson, A. E., Condron, L. M. & Haygarth, P. M. 1 Nov 2015 In : Geoderma. 257-258, p. 29-39 11 p.

    Research output: Contribution to journalArticle

  7. Growth rate hypothesis and efficiency of protein synthesis under different sulphate concentrations in two green algae

    Giordano, M., Palmucci, M. & Raven, J. A. Nov 2015 In : Plant, Cell & Environment. 38, 11, p. 2313-2317 5 p.

    Research output: Contribution to journalArticle

  8. A transcriptional reference map of defence hormone responses in potato

    Wiesel, L., Davis, J. L., Milne, L., Redondo Fernandez, V., Herold, M. B., Middlefell Williams, J., Morris, J., Hedley, P. E., Harrower, B., Newton, A. C., Birch, P. R. J., Gilroy, E. M. & Hein, I. 19 Oct 2015 In : Scientific Reports. 5, 15229

    Research output: Contribution to journalArticle

  9. AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript - specific expression in Arabidopsis thaliana

    Zhang, R., Calixto, C. P. G., Tzioutziou, N. A., James, A. B., Simpson, C. G., Guo, W., Marquez, Y., Kalyna, M., Patro, R., Eyras, E., Barta, A., Nimmo, H. G. & Brown, J. W. S. Oct 2015 In : New Phytologist. 208, 1, p. 96-101 6 p.

    Research output: Contribution to journalArticle

  10. DNA entropy reveals a significant difference in complexity between housekeeping and tissue specific gene promoters

    Thomas, D., Finan, C., Newport, M. J. & Jones, S. Oct 2015 In : Computational Biology and Chemistry. 58, p. 19-24 6 p.

    Research output: Contribution to journalArticle

  11. A host KH RNA-binding protein is a susceptibility factor targeted by an RXLR effector to promote late blight disease

    Wang, X., Boevink, P., McLellan, H., Armstrong, M., Bukharova, T., Qin, Z. & Birch, P. R. J. 7 Sep 2015 In : Molecular Plant. 8, 9, p. 1385-1395 11 p.

    Research output: Contribution to journalArticle

  12. Could land-based early photosynthesizing ecosystems have bioengineered the planet in mid-Palaeozoic times?

    Edwards, D., Cherns, L. & Raven, J. A. Sep 2015 In : Palaeontology. 58, 5, p. 803-837 35 p.

    Research output: Contribution to journalArticle

  13. Gas transfer controls carbon limitation during biomass production by marine microalgae

    Tamburic, B., Evenhuis, C. R., Suggett, D. J., Larkum, A. W. D., Raven, J. A. & Ralph, P. J. 24 Aug 2015 In : ChemSusChem. 8, 16, p. 2727-2736 10 p.

    Research output: Contribution to journalArticle

  14. Evolutionary dynamics of the cellulose synthase gene superfamily in grasses

    Schwerdt, J. G., MacKenzie, K., Wright, F., Oehme, D., Wagner, J. M., Harvey, A. J., Shirley, N. J., Burton, R. A., Schreiber, M., Halpin, C., Zimmer, J., Marshall, D. F., Waugh, R. & Fincher, G. B. Jul 2015 In : Plant Physiology. 168, 3, p. 968-983 16 p.

    Research output: Contribution to journalArticle

  15. HORIZONS: Acclimation, adaptation, traits and trade-offs in plankton functional type models: Reconciling terminology for biology and modelling

    Flynn, K. J., St John, M., Raven, J. A., Skibinski, D. O. F., Allen, J. I., Mitra, A. & Hofmann, E. E. Jul 2015 In : Journal of Plankton Research. 37, 4, p. 683-691 9 p.

    Research output: Contribution to journalArticle

  16. Mind the gap-deficits in our knowledge of aspects impacting the bioavailability of phytochemicals and their metabolites-a position paper focussing on carotenoids and polyphenols

    Bohn, T., McDougall, G. J., Alegría, A., Alminger, M., Arrigoni, E., Aura, A-M., Brito, C., Cilla, A., El, S. N., Karakaya, S., Martinez-Cuesta, M. C. & Santos, C. N. Jul 2015 In : Molecular Nutrition & Food Research. 59, 7, p. 1307-1323 17 p.

    Research output: Contribution to journalArticle

  17. Nuclear processes associated with plant immunity and pathogen susceptibility

    Motion, G. B., Marques Monteiro Amaro, T. M., Kulagina, N. & Huitema, E. Jul 2015 In : Briefings in Functional Genomics. 14, 4, p. 243-252 10 p.

    Research output: Contribution to journalArticle

  18. Surface flux patterns on planets in circumbinary systems and potential for photosynthesis

    Forgan, D. H., Mead, A., Cockell, C. S. & Raven, J. A. Jul 2015 In : International Journal of Astrobiology. 14, 3, p. 465-478 14 p.

    Research output: Contribution to journalArticle

  19. Nitrogen deficiency in barley (Hordeum vulgare) seedlings induces molecular and metabolic adjustments that trigger aphid resistance

    Comadira, G., Rasool, B., Karpinska, B., Morris, J., Verrall, S. R., Hedley, P. E., Foyer, C. H. & Hancock, R. D. 12 Jun 2015 In : Journal of Experimental Botany. 66, 12, p. 3639-3655 17 p.

    Research output: Contribution to journalArticle

  20. U-box E3 ubiquitin ligase PUB17 acts in the nucleus to promote specific immune pathways triggered by Phytophthora infestans

    He, Q., McLellan, H., Boevink, P. C., Sadanandom, A., Xie, C., Birch, P. R. J. & Tian, Z. Jun 2015 In : Journal of Experimental Botany. 66, 11, p. 3189-3199 11 p.

    Research output: Contribution to journalArticle

  21. Characterization of Arabidopsis transcriptional responses to different aphid species reveals genes that contribute to host susceptibility and non-host resistance

    Jaouannet, M., Morris, J. A., Hedley, P. E. & Bos, J. I. B. 20 May 2015 In : PLoS Pathogens. 11, 5, 26 p., e1004918

    Research output: Contribution to journalArticle

  22. Barley: a translational model for adaptation to climate change

    Dawson, I. K., Russell, J., Powell, W., Steffenson, B., Thomas, W. T. B. & Waugh, R. 1 May 2015 In : New Phytologist. 206, 3, p. 913-931 19 p.

    Research output: Contribution to journalArticle

  23. In search of future earths: assessing the possibility of finding Earth analogues in the later stages of their habitable lifetimes

    O'Malley-James, J. T., Greaves, J. S., Raven, J. A. & Cockell, C. S. May 2015 In : Astrobiology. 15, 5, p. 400-411 12 p.

    Research output: Contribution to journalArticle

  24. Optimising ketocarotenoid production in potato tubers: Effect of genetic background, transgene combinations and environment

    Campbell, R., Morris, W. L., Mortimer, C. L., Misawa, N., Ducreux, L. J. M., Morris, J. A., Hedley, P. E., Fraser, P. D. & Taylor, M. A. May 2015 In : Plant Science. 234, p. 27-37 11 p.

    Research output: Contribution to journalArticle

  25. The Top 10 oomycete pathogens in molecular plant pathology

    Kamoun, S. , Furzer, O. , Jones, J. D. G. , Judelson, H. S. , Ali, G. S. , Dalio, R. J. D. , Roy, S. G. , Schena, L. , Zambounis, A. , Panabières, F. , Cahill, D. , Ruocco, M. , Figueiredo, A. , Chen, X. R. , Hulvey, J. , Stam, R. , Lamour, K. , Gijzen, M. , Tyler, B. M. & 15 others Grünwald, N. J., Mukhtar, M. S., Tomé, D. F. A., Tör, M., Van Den Ackerveken, G., McDowell, J., Daayf, F., Fry, W. E., Lindqvist-Kreuze, H., Meijer, H. J. G., Petre, B., Ristaino, J., Yoshida, K., Birch, P. R. J. & Govers, F. May 2015 In : Molecular Plant Pathology. 16, 4, p. 413-434 22 p.

    Research output: Contribution to journalArticle

  26. Editorial on plants as alternative hosts for human and animal pathogens

    Holden, N. J., Jackson, R. W. & Schikora, A. 30 Apr 2015 In : Frontiers in Microbiology. 6, 2 p., 397

    Research output: Contribution to journalEditorial

  27. Modelling the genetic architecture of flowering time control in barley through nested association mapping

    Maurer, A., Draba, V., Jiang, Y., Schnaithmann, F., Sharma, R., Schumann, E., Kilian, B., Reif, J. C. & Pillen, K. 12 Apr 2015 In : BMC Genomics. 16, 12 p., 290

    Research output: Contribution to journalArticle

  28. Compartmentation of defensive compound synthesis in a red alga

    Raven, J. A. 1 Apr 2015 In : Journal of Applied Phycology. 51, 2, p. 222-224 3 p.

    Research output: Contribution to journalArticle

  29. Phenolic compounds in blackcurrant (Ribes nigrum L.) leaves relative to leaf position and harvest date

    Vagiri, M., Conner, S., Stewart, D., Andersson, S. C., Verrall, S., Johansson, E. & Rumpunen, K. 1 Apr 2015 In : Food Chemistry. 172, p. 135-142 8 p.

    Research output: Contribution to journalArticle

  30. Improving intercropping: a synthesis of research in agronomy, plant physiology and ecology

    Brooker, R. W. , Bennett, A. E. , Cong, W. F. , Daniell, T. J. , George, T. S. , Hallett, P. D. , Hawes, C. , Iannetta, P. P. M. , Jones, H. G. , Karley, A. J. , Li, L. , Mckenzie, B. M. , Pakeman, R. J. , Paterson, E. , Schöb, C. , Shen, J. , Squire, G. , Watson, C. A. , Zhang, C. & 3 others Zhang, F., Zhang, J. & White, P. J. Apr 2015 In : New Phytologist. 206, 1, p. 107-117 11 p.

    Research output: Contribution to journalArticle

  31. Photosynthesis in reproductive structures: costs and benefits

    Raven, J. A. & Griffiths, H. Apr 2015 In : Journal of Experimental Botany. 66, 7, p. 1699-1705 7 p.

    Research output: Contribution to journalArticle

  32. Plant lignin content altered by soil microbial community

    Bennett, A. E., Grussu, D., Kam, J., Caul, S. & Halpin, C. Apr 2015 In : New Phytologist. 206, 1, p. 166-174 9 p.

    Research output: Contribution to journalArticle

  33. Structure and function of the bacterial root microbiota in wild and domesticated barley

    Bulgarelli, D., Garrido-Oter, R., Münch, P. C., Weiman, A., Dröge, J., Pan, Y., McHardy, A. C. & Schulze-Lefert, P. 11 Mar 2015 In : Cell Host & Microbe. 17, 3, p. 392-403 12 p.

    Research output: Contribution to journalArticle

  34. Alternative splicing of mini-exons in the Arabidopsis leaf rust receptor-like kinase LRK10 genes affects subcellular localisation

    Shin, K. H., Yang, S. H., Lee, J. Y., Lim, C. W., Lee, S. C., Brown, J. W. S. & Kim, S. H. Mar 2015 In : Plant Cell Reports. 34, 3, p. 495-505 11 p.

    Research output: Contribution to journalArticle

  35. Current perspective on protein S-acylation in plants: more than just a fatty anchor?

    Hurst, C. H. & Hemsley, P. A. Mar 2015 In : Journal of Experimental Botany. 66, 6, p. 1599-1606 8 p.

    Research output: Contribution to journalArticle

  36. The plant microbiome at work

    Schlaeppi, K. & Bulgarelli, D. Mar 2015 In : Molecular Plant - Microbe Interactions. 28, 3, p. 212-217 6 p.

    Research output: Contribution to journalArticle

  37. Enhanced biofuel production using optimality, pathway modification and waste minimization

    Raven, J. A. & Ralph, P. J. Feb 2015 In : Journal of Applied Phycology. 27, 1, p. 1-31 31 p.

    Research output: Contribution to journalArticle

  38. Evolutionary relationships among barley and Arabidopsis core circadian clock and clock-associated genes

    Calixto, C. P. G., Waugh, R. & Brown, J. W. S. Feb 2015 In : Journal of Molecular Evolution. 80, 2, p. 108-119 12 p.

    Research output: Contribution to journalArticle

  39. The importance of lipid modified proteins in plants

    Hemsley, P. A. Jan 2015 In : New Phytologist. 205, 2, p. 476-489 14 p.

    Research output: Contribution to journalArticle

  40. Identification and characterization of parasitism genes from the pinewood nematode Bursaphelenchus xylophilus reveals a multi-layered detoxification strategy

    Espada, M., Silva, A. C., Eves-van den Akker, S., Cock, P. J. A., Mota, M. & Jones, J. T. 2015 In : Molecular Plant Pathology. 10 p.

    Research output: Contribution to journalArticle

  41. Plant root associated Bacillus subtilis biofilm formation

    Bissett, E., De Vega Perez, D., Holden, N. & Stanley-Wall, N. R. 2015

    Research output: Contribution to conferencePoster

  42. Structure, function and evolution of the microbiota thriving at the root-soil interface

    Bulgarelli, D. 2015

    Research output: Contribution to conferenceOther

  43. Active water transport in unicellular algae: where, why, and how

    Raven, J. A. & Doblin, M. A. 22 Dec 2014 In : Journal of Experimental Botany. 65, 22, p. 6279-6292 14 p.

    Research output: Contribution to journalArticle

  44. Progress in understanding the mechanisms and functional importance of protein-membrane interactions in plants

    Hemsley, P. A. Dec 2014 In : New Phytologist. 204, 4, p. 741-743 3 p.

    Research output: Contribution to journalArticle

  45. Stability, across environments, of grain and alcohol yield, in soft wheat varieties grown for grain distilling or bioethanol production

    Swanston, J. S., Smith, P. L., Thomas, W. T. B., Sylvester-Bradley, R., Kindred, D., Brosnan, J. M., Bringhurst, T. A. & Agu, R. C. Dec 2014 In : Journal of the Science of Food and Agriculture. 94, 15, p. 3234-3240 7 p.

    Research output: Contribution to journalArticle

  46. The zigzag model of plant-microbe interactions: is it time to move on?

    Pritchard, L. & Birch, P. R. J. Dec 2014 In : Molecular Plant Pathology. 15, 9, p. 865-870 6 p.

    Research output: Contribution to journalArticle

  47. Genetic dissection of photoperiod response based on GWAS of pre-anthesis phase duration in spring barley

    Alqudah, A. M., Sharma, R., Pasam, R. K., Graner, A., Kilian, B. & Schnurbusch, T. 24 Nov 2014 In : PLoS ONE. 9, 11, 27 p., e113120

    Research output: Contribution to journalArticle

  48. Molecular effects of resistance elicitors from biological origin and their potential for crop protection

    Wiesel, L., Newton, A. C., Elliott, I., Booty, D., Gilroy, E. M., Birch, P. R. J. & Hein, I. 21 Nov 2014 In : Frontiers in Plant Science. 5, 13 p., 655

    Research output: Contribution to journalArticle

  49. The role of effectors in nonhost resistance to filamentous plant pathogens

    Stam, R., Mantelin, S., McLellan, H. & Thilliez, G. 5 Nov 2014 In : Frontiers in Plant Science. 5, 582

    Research output: Contribution to journalArticle

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