Discovery - University of Dundee - Online Publications

Library & Learning Centre

Plant Sciences

1 - 291 out of 291Page size: 500
RSS feed
Sort by: Publication year

  1. Root–soil friction: quantification provides evidence for measurable benefits for manipulation of root-tip traits

    McKenzie, B. M., Mullins, C. E., Tisdall, J. M. & Bengough, A. G. Jun-2013 36, 6, p. 1085-1092, 8 p.

    Research output: Contribution to journal › Article

  2. Exploitation of interspecific diversity for monocot crop improvement

    King, J., Armstead, I., Harper, J., Ramsey, L., Snape, J., Waugh, R., James, C., Thomas, A., Gasior, D., Kelly, R., Roberts, L., Gustafson, P. & King, I. May-2013 In : Heredity. 110, 5, p. 475-483, 9 p.

    Research output: Contribution to journal › Article

  3. Iron acquisition and allocation in stramenopile algae

    Raven, J. A. May-2013 In : Journal of Experimental Botany. 64, 8, p. 2119-2127, 9 p.

    Research output: Contribution to journal › Comment/debate

  4. Microbial responses to the erosional redistribution of soil organic carbon in arable fields.

    Dungait, J. A. J., Ghee, C., Rowan, J. S., McKenzie, B. M., Hawes, C., Dixon, E. R., Paterson, E. & Hopkins, D. W. May-2013 In : Soil Biology & Biochemistry. 60, p. 195-201, 7 p.

    Research output: Contribution to journal › Article

  5. Editor's Choice: Evaluating the potential for adverse interactions within genetically engineered breeding stacks

    Steiner, H-Y., Halpin, C., Jez, J. M., Kough, J., Parrott, W., Underhill, L., Weber, N. & Curtis Hannah, L. Apr-2013 In : Plant Physiology. 161, 4, p. 1587-1594, 8 p.

    Research output: Contribution to journal › Article

  6. QuaNCAT: Quantitating proteome dynamics in primary cells

    Howden, A. J. M., Geoghegan, V., Katsch, K., Efstathiou, G., Thomas, B., Trudgian, D. C., Acuto, O., Bhushan, B., Boutureira, O., Davis, B. G., Kessler, B. M. & Dieterich, D. C. Apr-2013 In : Nature Methods. 10, 4, p. 343-346, 4 p.

    Research output: Contribution to journal › Article

  7. Rubisco: still the most abundant protein of Earth?

    Raven, J. A. Apr-2013 In : New Phytologist. 198, 1, p. 1-3, 3 p.

    Research output: Contribution to journal › Article

  8. Swansong biospheres: refuges for life and novel microbial biospheres on terrestrial planets near the end of their habitable lifetimes

    O'Malley-James, J. T., Greaves, J. S., Raven, J. A. & Cockell, C. S. Apr-2013 12, 2, p. 99-112, 14 p.

    Research output: Contribution to journal › Article

  9. The endophytic lifestyle of Escherichia coli O157:H7: quantification and internal localization in roots

    Wright, K. M., Chapman, S., McGeachy, K., Humphris, S., Campbell, E., Toth, I. K. & Holden, N. J. Apr-2013 In : Phytopathology. 103, 4, p. 333-340, 8 p.

    Research output: Contribution to journal › Article

  10. Identification and Characterisation CRN Effectors in Phytophthora capsici Shows Modularity and Functional Diversity

    Stam, R., Jupe, J., Howden, A. J. M., Morris, J. A., Boevink, P. C., Hedley, P. E. & Huitema, E. 25-Mar-2013 In : PLoS ONE. 8, 3, 13 p., e59517

    Research output: Contribution to journal › Article

  11. Contributions of roots and rootstocks to sustainable, intensified crop production

    Gregory, P. J., Atkinson, C. J., Bengough, A. G., Else, M. A., Fernandez-Fernandez, F., Harrison, R. J. & Schmidt, S. Mar-2013 In : Journal of Experimental Botany. 64, 5, p. 1209-1222, 14 p.

    Research output: Contribution to journal › Scientific review

  12. Efficient multiplex simple sequence repeat genotyping of the oomycete plant pathogen Phytophthora infestans

    Li, Y., Cooke, D. E. L., Jacobsen, E. & van der Lee, T. Mar-2013 In : Journal of Microbiological Methods. 92, 3, p. 316-322, 7 p.

    Research output: Contribution to journal › Article

  13. How does glucophage (metformin) work? Investigation of the cellular action of chemical analogues

    Logie, L., Bacon, S., Middleton, P., Harthill, J., Coats, J., Stewart, D., Sakamoto, K., McDougall, G. & Rena, G. Mar-2013 In : Diabetic Medicine. 30, Suppl. 1, p. 41-41, 1 p., P44

    Research output: Contribution to journal › Meeting abstract

  14. A proteomic approach identifies many novel palmitoylated proteins in Arabidopsis

    Hemsley, P. A., Weimar, T., Lilley, K. S., Dupree, P. & Grierson, C. S. Feb-2013 In : New Phytologist. 197, 3, p. 805-814, 10 p.

    Research output: Contribution to journal › Article

  15. Genetic and environmental effects on Tannin composition in strawberry (Fragaria x ananassa) cultivars grown in different European locations

    Josuttis, M., Verrall, S., Stewart, D., Krueger, E. & McDougall, G. J. 30-Jan-2013 In : Journal of Agricultural and Food Chemistry. 61, 4, p. 790-800, 11 p.

    Research output: Contribution to journal › Article

  16. FR-H3: a new QTL to assist in the development of fall-sown barley with superior low temperature tolerance

    Fisk, S. P., Cuesta-Marcos, A., Cistue, L., Russell, J., Smith, K. P., Baenziger, S., Bedo, Z., Corey, A., Filichkin, T., Karsai, I., Waugh, R. & Hayes, P. M. 2013 In : Theoretical and Applied Genetics. 126, 2, p. 335-347, 13 p.

    Research output: Contribution to journal › Article

  17. How does glucophage (metformin) work? Investigation of the cellular action of chemical analogues

    Logie, L., Bacon, S., Middleton, P., Harthill, J., Coats, J., Stewart, D., Sakamoto, K., McDougall, G. & Rena, G. 2013

    Research output: Contribution to conference › Poster

  18. Identification and Characterization of miRNA Transcriptome in Potato by High-Throughput Sequencing

    Zhang, R., Marshall, D., Bryan, G. J. & Hornyik, C. 2013 In : PLoS ONE. 8, 2, 9 p., ARTN e57233

    Research output: Contribution to journal › Article

  19. Neuroprotective effects of digested polyphenols from wild blackberry species

    Tavares, L., Figueira, I., McDougall, G. J., Vieira, H. L. A., Stewart, D., Alves, P. M., Ferreira, R. B. & Santos, C. N. 2013 In : European Journal of Nutrition. 52, 1, p. 225-236, 12 p.

    Research output: Contribution to journal › Article

  20. An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana

    Streitner, C., Köster, T., Simpson, C. G., Shaw, P., Danisman, S., Brown, J. W. S. & Staiger, D. Dec-2012 In : Nucleic Acids Research. 40, 22, p. 11240-11255, 16 p.

    Research output: Contribution to journal › Article

  21. Crop genome plasticity and its Relevance to food and feed safety of genetically engineered breeding stacks

    Weber, N., Halpin, C., Curtis Hannah, L., Jez, J. M., Kough, J. & Parrott, W. Dec-2012 In : Plant Physiology. 160, 4, p. 1842-1853, 12 p.

    Research output: Contribution to journal › Article

  22. Estimating root-soil contact from 3D X-ray microtomographs

    Schmidt, S., Bengough, A. G., Gregory, P. J., Grinev, D. V. & Otten, W. Dec-2012 In : European Journal of Soil Science. 63, 6, p. 776-786, 11 p.

    Research output: Contribution to journal › Article

  23. Relocalization of late blight resistance protein r3a to endosomal compartments is associated with effector recognition and required for the immune response.

    Engelhardt, S., Boevink, P. C., Armstrong, M. R., Ramos, M. B., Hein, I. & Birch, P. R. J. Dec-2012 In : Plant Cell. 24, 12, p. 5142-5158, 16 p.

    Research output: Contribution to journal › Article

  24. A physical, genetic and functional sequence assembly of the barley genome

    Mayer, K. F. X., Waugh, R., Brown, J. W. S., Schulman, A., Langridge, P., Platzer, M., Fincher, G. B., Muehlbauer, G. J., Sato, K., Close, T. J., Wise, R. P., Stein, N. & International Barley Genome Sequencing Consortium 29-Nov-2012 In : Nature. 491, 7426, p. 711-6, 6 p.

    Research output: Contribution to journal › Article

  25. Ultramorphology of the ovipositor of Venturia canescens (Gravenhorst) and possible mechanisms for oviposition

    Shah, Z. A., Blackwell, A. & Hubbard, S. F. Nov-2012 In : International Journal of Agriculture and Biology. 14, 6, p. 908-914, 7 p.

    Research output: Contribution to journal › Article

  26. Comparison of two headspace sampling techniques for the analysis of off-flavour volatiles from oat based products

    Cognat, C., Shepherd, T., Verrall, S. R. & Stewart, D. 1-Oct-2012 In : Food Chemistry. 134, 3, p. 1592-1600, 9 p.

    Research output: Contribution to journal › Article

  27. A new physical interpretation of plant root capacitance

    Dietrich, R. C., Bengough, A. G., Jones, H. G. & White, P. J. Oct-2012 In : Journal of Experimental Botany. 63, 17, p. 6149-6159, 11 p.

    Research output: Contribution to journal › Article

  28. Mutation of Arabidopsis SPLICEOSOMAL TIMEKEEPER LOCUS1 causes Circadian clock defects

    Jones, M. A., Williams, B. A., McNicol, J., Simpson, C. G., Brown, J. W. S. & Harmer, S. L. Oct-2012 In : Plant Cell. 24, 10, p. 4066-82, 17 p.

    Research output: Contribution to journal › Article

  29. Spatiotemporal asymmetry of the meiotic program underlies the predominantly distal distribution of meiotic crossovers in barley

    Higgins, J. D., Perry, R. M., Barakate, A., Ramsay, L., Waugh, R., Halpin, C., Armstrong, S. J. & Franklin, F. C. H. Oct-2012 In : Plant Cell. 24, 10, p. 4096-4109, 14 p.

    Research output: Contribution to journal › Article

  30. Testing the distinctness of shoot ionomes of angiosperm families using the Rothamsted Park Grass Continuous Hay Experiment

    White, P. J., Broadley, M. R., Thompson, J. A., McNicol, J. W., Crawley, M. J., Poulton, P. R. & Johnston, A. E. Oct-2012 In : New Phytologist. 196, 1, p. 101-109, 9 p.

    Research output: Contribution to journal › Article

  31. Thermoplasticity in the plant circadian clock: how plants tell the time-perature

    James, A. B., Hasan-Syed, N., Brown, J. W. S. & Nimmo, H. G. Oct-2012 In : Plant Signaling and Behavior. 7, 10, p. 1219-23, 5 p.

    Research output: Contribution to journal › Article

  32. Antioxidant capacity, total phenolic and ascorbate content as a function of the genetic diversity of leek (Allium ampeloprasum var. porrum)

    Bernaert, N., De Paepe, D., Bouten, C., De Clercq, H., Stewart, D., Van Bockstaele, E., De Loose, M. & Van Droogenbroeck, B. 15-Sep-2012 In : Food Chemistry. 134, 2, p. 669-677, 9 p.

    Research output: Contribution to journal › Article

  33. A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis

    Vanholme, R., Storme, V., Vanholme, B., Sundin, L., Christensen, J. H., Goeminne, G., Halpin, C., Rohde, A., Morreel, K. & Boerjan, W. Sep-2012 In : Plant Cell. 24, 9, p. 3506-3529, 24 p.

    Research output: Contribution to journal › Article

  34. Impact of Anthocyanin chemical structure found in pomegranate juice on leukaemia treatment

    Dahlawi, H., Jordan-Mahy, N., Clench, M. R., McDougall, G. J. & Le Maitre, C. Sep-2012 In : Journal of Pathology. 228, Suppl. 1, p. S37-S37, 1 p.

    Research output: Contribution to journal › Meeting abstract

  35. The anti-cancerous potential of polyphenols in the treatment of human myeloid and lymphoid leukaemia

    Mahbub, A., Le Maitre, C., Haywood-Small, S. L., McDougall, G., Cross, N. A. & Jordan-Mahy, N. Sep-2012 In : Journal of Pathology. 228, Suppl. 1, p. S34-S34, 1 p.

    Research output: Contribution to journal › Meeting abstract

  36. Genetic characterization of a reciprocal translocation present in a widely grown barley variety

    Farre, A., Cuadrado, A., Lacasa-Benito, I., Cistue, L., Schubert, I., Comadran, J., Jansen, J. & Romagosa, I. Aug-2012 In : Molecular Breeding. 30, 2, p. 1109-1119, 11 p.

    Research output: Contribution to journal › Article

  37. Host Protein BSL1 Associates with Phytophthora infestans RXLR Effector AVR2 and the Solanum demissum Immune Receptor R2 to Mediate Disease Resistance: Effector AVR2 Associates with BSL1

    Saunders, D. G. O., Breen, S., Win, J., Schornak, S., Hein, I., Bozkurt, T. O., Champouret, N., Vleeshouwers, V. G. A. A., Birch, P. R. J., Gilroy, E. M. & Kamoun, S. Aug-2012 In : Plant Cell. 24, 8, p. 3420-3434, 14 p.

    Research output: Contribution to journal › Article

  38. Nature and nurture: the importance of seed phosphorus content

    White, P. J. & Veneklaas, E. J. Aug-2012 In : Plant and Soil. 357, 1-2, p. 1-8, 8 p.

    Research output: Contribution to journal › Editorial

  39. Soil fungal community composition does not alter along a latitudinal gradient through the maritime and sub-Antarctic

    Dennis, P. G., Rushton, S. P., Newsham, K. K., Lauducina, V. A., Ord, V. J., Daniell, T. J., O'Donnell, A. G. & Hopkins, D. W. Aug-2012 In : Fungal Ecology. 5, 4, p. 403-408, 6 p.

    Research output: Contribution to journal › Article

  40. Novel bacteriophages containing a genome of another bacteriophage within their genomes

    Swanson, M. M., Reavy, B., Makarova, K. S., Cock, P. J., Hopkins, D. W., Torrance, L., Koonin, E. V. & Taliansky, M. 17-Jul-2012 In : PLoS ONE. 7, 7, p. -, 12 p., e40683

    Research output: Contribution to journal › Article

  41. Effector-triggered post-translational modifications and their role in suppression of plant immunity

    Howden, A. J. M. & Huitema, E. 16-Jul-2012 3, 160

    Research output: Contribution to journal › Article

  42. Decomposition of tobacco roots with modified phenylpropanoid content by fungi with contrasting lignocellulose degradation strategies

    Tilston, E. L., Halpin, C. & Hopkins, D. W. Jul-2012 In : Biology and Fertility of Soils. p. 1-7, 7 p.

    Research output: Contribution to journal › Article

  43. Raspberry viruses manipulate the behaviour of their insect vectors

    McMenemy, L. S., Hartley, S. E., MacFarlane, S. A., Karley, A. J., Shepherd, T. & Johnson, S. N. Jul-2012 In : Entomologia Experimentalis et Applicata. 144, 1, p. 56-68, 13 p.

    Research output: Contribution to journal › Article

  44. Soil strength and macropore volume limit root elongation rates in many UK agricultural soils

    Valentine, T. A., Hallett, P. D., Binnie, K., Young, M. W., Squire, G. R., Hawes, C. & Bengough, A. G. Jul-2012 In : Annals of Botany. 110, 2, p. 259-270, 12 p.

    Research output: Contribution to journal › Article

  45. The Mediator subunit SFR6/MED16 controls defence gene expression mediated by salicylic acid and jasmonate responsive pathways

    Wathugala, D. L., Hemsley, P. A., Moffat, C. S., Cremelie, P., Knight, M. R. & Knight, H. Jul-2012 In : New Phytologist. 195, 1, p. 217-230, 14 p.

    Research output: Contribution to journal › Article

  46. What are the implications of variation in root hair length on tolerance to phosphorus deficiency in combination with water stress in barley (Hordeum vulgare)?

    Brown, L. K., George, T. S., Thompson, J. A., Wright, G., Lyon, J., Dupuy, L., Hubbard, S. F. & White, P. J. Jul-2012 In : Annals of Botany. 110, 2, p. 319-328, 10 p.

    Research output: Contribution to journal › Article

  47. Analysis of the barley bract suppression gene Trd1

    Houston, K., Druka, A., Bonar, N., Macaulay, M., Lundqvist, U., Franckowiak, J., Morgante, M., Stein, N. & Waugh, R. Jun-2012 In : Theoretical and Applied Genetics. 125, 1, p. 33-45, 13 p.

    Research output: Contribution to journal › Article

  48. Cellular Responses to the Metal-Binding Properties of Metformin

    Logie, L., Harthill, J., Patel, K., Bacon, S., Hamilton, D. L., Macrae, K., McDougall, G., Wang, H-H., Xue, L., Jiang, H., Sakamoto, K., Prescott, A. R. & Rena, G. Jun-2012 In : Diabetes. 61, 6, p. 1423-1433, 11 p.

    Research output: Contribution to journal › Article

  49. Inhibition of acetylcholinesterase by green and white tea and their simulated intestinal metabolites

    Okello, E. J., Leylabi, R. & McDougall, G. J. Jun-2012 In : Food & Function. 3, 6, p. 651-661, 11 p.

    Research output: Contribution to journal › Article

  50. Protein turnover and plant RNA and phosphorus requirements in relation to nitrogen fixation

    Raven, J. A. Jun-2012 In : Plant Science. 188, p. 25-35, 11 p.

    Research output: Contribution to journal › Scientific review

  51. Some elements are more equal than others: soil-to-plant transfer of radiocaesium and radiostrontium, revisited

    Broadley, M. R. & White, P. J. Jun-2012 In : Plant and Soil. 355, 1-2, p. 23-27, 5 p.

    Research output: Contribution to journal › Editorial

  52. The effect of a dominant phytophthora infestans genotype (13_A2) in Great Britain on host resistance to foliar late blight in commercial potato cultivars

    Lees, A. K., Stewart, J. A., Lynott, J. S., Carnegie, S. F., Campbell, H. & Roberts, A. M. I. Jun-2012 In : Potato Research. 55, 2, p. 125-134, 10 p.

    Research output: Contribution to journal › Article

  53. The tomato genome sequence provides insights into fleshy fruit evolution

    Sato, S. , Tabata, S. , Hirakawa, H. , Asamizu, E. , Shirasawa, K. , Isobe, S. , Kaneko, T. , Nakamura, Y. , Shibata, D. , Aoki, K. , Egholm, M. , Knight, J. , Bogden, R. , Li, C. , Shuang, Y. , Xu, X. , Pan, S. , Cheng, S. , Liu, X. , Ren, Y. & 303 others Wang, J., Albiero, A., Dal Pero, F., Todesco, S., Van Eck, J., Buels, R. M., Bombarely, A., Gosselin, J. R., Huang, M., Leto, J. A., Menda, N., Strickler, S., Mao, L., Gao, S., Tecle, I. Y., York, T., Zheng, Y., Vrebalov, J. T., Lee, J., Zhong, S., Mueller, L. A., Stiekema, W. J., Ribeca, P., Alioto, T., Yang, W., Huang, S., Du, Y., Zhang, Z., Gao, J., Guo, Y., Wang, X., Li, Y., He, J., Li, C., Cheng, Z., Zuo, J., Ren, J., Zhao, J., Yan, L., Jiang, H., Wang, B., Li, H., Li, Z., Fu, F., Chen, B., Han, B., Feng, Q., Fan, D., Wang, Y., Ling, H., Xue, Y., Ware, D., McCombie, W. R., Lippman, Z. B., Chia, J-M., Jiang, K., Pasternak, S., Gelley, L., Kramer, M., Anderson, L. K., Chang, S-B., Royer, S. M., Shearer, L. A., Stack, S. M., Rose, J. K. C., Xu, Y., Eannetta, N., Matas, A. J., McQuinn, R., Tanksley, S. D., Camara, F., Guigo, R., Rombauts, S., Fawcett, J., Van de Peer, Y., Zamir, D., Liang, C., Spannagl, M., Gundlach, H., Bruggmann, R., Mayer, K., Jia, Z., Zhang, J., Ye, Z., Bishop, G. J., Butcher, S., Lopez-Cobollo, R., Buchan, D., Filippis, I., Abbott, J., Dixit, R., Singh, M., Singh, A., Pal, J. K., Pandit, A., Singh, P. K., Mahato, A. K., Dogra, V., Gaikwad, K., Sharma, T. R., Mohapatra, T., Singh, N. K., Causse, M., Rothan, C., Schiex, T., Noirot, C., Bellec, A., Klopp, C., Delalande, C., Berges, H., Mariette, J., Frasse, P., Vautrin, S., Zouine, M., Latche, A., Rousseau, C., Regad, F., Pech, J-C., Philippot, M., Bouzayen, M., Pericard, P., Osorio, S., Fernandez del Carmen, A., Monforte, A., Granell, A., Fernandez-Munoz, R., Conte, M., Lichtenstein, G., Carrari, F., De Bellis, G., Fuligni, F., Peano, C., Grandillo, S., Termolino, P., Pietrella, M., Fantini, E., Falcone, G., Fiore, A., Giuliano, G., Lopez, L., Facella, P., Perrotta, G., Daddiego, L., Bryan, G., Orozco, M., Pastor, X., Torrents, D., van Schriek, K. N. V. M. G. M., Feron, R. M. C., van Oeveren, J., de Heer, P., daPonte, L., Jacobs-Oomen, S., Cariaso, M., Prins, M., van Eijk, M. J. T., Janssen, A., van Haaren, M. J. J., Jo, S-H., Kim, J., Kwon, S-Y., Kim, S., Koo, D-H., Lee, S., Hur, C-G., Clouser, C., Rico, A., Hallab, A., Gebhardt, C., Klee, K., Joecker, A., Warfsmann, J., Goebel, U., Kawamura, S., Yano, K., Sherman, J. D., Fukuoka, H., Negoro, S., Bhutty, S., Chowdhury, P., Chattopadhyay, D., Datema, E., Smit, S., Schijlen, E. W. M., van de Belt, J., van Haarst, J. C., Peters, S. A., van Staveren, M. J., Henkens, M. H. C., Mooyman, P. J. W., Hesselink, T., van Ham, R. C. H. J., Jiang, G., Droege, M., Choi, D., Kang, B-C., Kim, B. D., Park, M., Kim, S., Yeom, S-I., Lee, Y-H., Choi, Y-D., Li, G., Gao, J., Liu, Y., Huang, S., Fernandez-Pedrosa, V., Collado, C., Zuniga, S., Wang, G., Cade, R., Dietrich, R. A., Rogers, J., Knapp, S., Fei, Z., White, R. A., Thannhauser, T. W., Giovannoni, J. J., Angel Botella, M., Gilbert, L., Gonzalez, R., Goicoechea, J. L., Yu, Y., Kudrna, D., Collura, K., Wissotski, M., Wing, R., Schoof, H., Meyers, B. C., Gurazada, A. B., Green, P. J., Mathur, S., Vyas, S., Solanke, A. U., Kumar, R., Gupta, V., Sharma, A. K., Khurana, P., Khurana, J. P., Tyagi, A. K., Dalmay, T., Mohorianu, I., Walts, B., Chamala, S., Barbazuk, W. B., Li, J., Guo, H., Lee, T-H., Wang, Y., Zhang, D., Paterson, A. H., Wang, X., Tang, H., Barone, A., Chiusano, M. L., Ercolano, M. R., D'Agostino, N., Di Filippo, M., Traini, A., Sanseverino, W., Frusciante, L., Seymour, G. B., Elharam, M., Fu, Y., Hua, A., Kenton, S., Lewis, J., Lin, S., Najar, F., Lai, H., Qin, B., Qu, C., Shi, R., White, D., White, J., Xing, Y., Yang, K., Yi, J., Yao, Z., Zhou, L., Roe, B. A., Vezzi, A., D'Angelo, M., Zimbello, R., Schiavon, R., Caniato, E., Rigobello, C., Campagna, D., Vitulo, N., Valle, G., Nelson, D. R., De Paoli, E., Szinay, D., de Jong, H. H., Bai, Y., Visser, R. G. F., Lankhorst, R. M. K., Beasley, H., McLaren, K., Nicholson, C., Riddle, C., Gianese, G. & Tomato Genome Consortium 31-May-2012 In : Nature. 485, 7400, p. 635-641, 7 p.

    Research output: Contribution to journal › Article

  54. Over-seasons analysis of quantitative trait loci affecting phenolic content and antioxidant capacity in raspberry

    Dobson, P., Graham, J., Stewart, D., Brennan, R., Hackett, C. A. & McDougall, G. J. 30-May-2012 In : Journal of Agricultural and Food Chemistry. 60, 21, p. 5360-5366, 7 p.

    Research output: Contribution to journal › Article

  55. Distribution of calcium (Ca) and magnesium (Mg) in the leaves of Brassica rapa under varying exogenous Ca and Mg supply

    Rios, J. J., Lochlainn, S. O., Devonshire, J., Graham, N. S., Hammond, J. P., King, G. J., White, P. J., Kurup, S. & Broadley, M. R. May-2012 In : Annals of Botany. 109, 6, p. 1081-1089, 9 p.

    Research output: Contribution to journal › Article

  56. Genetic structure among arable populations of Capsella bursa-pastoris is linked to functional traits and in-field conditions

    Begg, G. S., Wishart, J., Young, M. W., Squire, G. R. & Iannetta, P. P. M. May-2012 In : Ecography. 35, 5, p. 446-457, 12 p.

    Research output: Contribution to journal › Article

  57. Inactivation of PbTopo III beta causes hyper-excision of the Pathogenicity Island HAI2 resulting in reduced virulence of Pectobacterium atrosepticum

    Vanga, B. R., Butler, R. C., Toth, I. K., Ronson, C. W. & Pitman, A. R. May-2012 In : Molecular Microbiology. 84, 4, p. 648-663, 16 p.

    Research output: Contribution to journal › Article

  58. Lipophilic components in black currant seed and pomace extracts

    Dobson, G., Shrestha, M., Hilz, H., Karjalainen, R., McDougall, G. & Stewart, D. May-2012 In : European Journal of Lipid Science and Technology. 114, 5, p. 575-582, 8 p.

    Research output: Contribution to journal › Article

  59. Plant phytaspases and animal caspases: structurally unrelated death proteases with a common role and specificity

    Chichkova, N. V., Tuzhikov, A. I., Taliansky, M. & Vartapetian, A. B. May-2012 In : Physiologia Plantarum. 145, 1, p. 77-84, 8 p.

    Research output: Contribution to journal › Article

  60. Protein elemental sparing and codon usage bias are correlated among bacteria

    Bragg, J. G., Quigg, A., Raven, J. A. & Wagner, A. May-2012 In : Molecular Ecology. 21, 10, p. 2480-2487, 8 p.

    Research output: Contribution to journal › Article

  61. The extreme N-terminal domain of a hordeivirus TGB1 movement protein mediates its localization to the nucleolus and interaction with fibrillarin

    Semashko, M. A., Gonzalez, I., Shaw, J., Leonova, O. G., Popenko, V. I., Taliansky, M. E., Canto, T. & Kalinina, N. O. May-2012 In : Biochimie. 94, 5, p. 1180-1188, 9 p.

    Research output: Contribution to journal › Article

  62. The oomycete broad-host-range pathogen Phytophthora capsici

    Lamour, K. H., Stam, R., Jupe, J. & Huitema, E. May-2012 In : Molecular Plant Pathology. 13, 4, p. 329-337, 9 p.

    Research output: Contribution to journal › Article

  63. Alignment-Free Design of Highly Discriminatory Diagnostic Primer Sets for Escherichia coli O104:H4 Outbreak Strains

    Pritchard, L., Holden, N. J., Bielaszewska, M., Karch, H. & Toth, I. K. 5-Apr-2012 In : PLoS ONE. 7, 4, p. -, 8 p., e34498

    Research output: Contribution to journal › Article

  64. Evaluation and implementation of a potential diagnostic molecular marker for H1-conferred potato cyst nematode resistance in potato (Solanum tuberosum L.)

    Schultz, L., Cogan, N. O. I., McLean, K., Dale, M. F. B., Bryan, G. J., Forster, J. W. & Slater, A. T. Apr-2012 In : Plant Breeding. 131, 2, p. 315-321, 7 p.

    Research output: Contribution to journal › Article

  65. Genetic linkage mapping in an F2 perennial ryegrass population using DArT markers

    Tomaszewski, C., Byrne, S. L., Foito, A., Kildea, S., Kopecky, D., Dolezel, J., Heslop-Harrison, J. S. . P. A. T., Stewart, D. & Barth, S. Apr-2012 In : Plant Breeding. 131, 2, p. 345-349, 5 p.

    Research output: Contribution to journal › Article

  66. Genome-Wide Analysis of the Response of Dickeya dadantii 3937 to Plant Antimicrobial Peptides

    Rio-Alvarez, I., Rodriguez-Herva, J. J., Cuartas-Lanza, R., Toth, I., Pritchard, L., Rodriguez-Palenzuela, P. & Lopez-Solanilla, E. Apr-2012 In : Molecular Plant - Microbe Interactions. 25, 4, p. 523-533, 11 p.

    Research output: Contribution to journal › Article

  67. How do rootstocks control shoot water relations?

    Jones, H. G. Apr-2012 In : New Phytologist. 194, 2, p. 301-303, 3 p.

    Research output: Contribution to journal › Editorial

  68. Soil tillage effects on the efficacy of cultivars and their mixtures in winter barley

    Newton, A. C., Guy, D. C., Bengough, A. G., Gordon, D. C., McKenzie, B. M., Sun, B., Valentine, T. A. & Hallett, P. D. 14-Mar-2012 In : Field Crops Research. 128, p. 91-100, 10 p.

    Research output: Contribution to journal › Article

  69. A molecular method to assess Phytophthora diversity in environmental samples

    Scibetta, S., Schena, L., Chimento, A., Cacciola, S. O. & Cooke, D. E. L. Mar-2012 In : Journal of Microbiological Methods. 88, 3, p. 356-368, 13 p.

    Research output: Contribution to journal › Article

  70. Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis

    Kalyna, M., Simpson, C. G., Syed, N. H., Lewandowska, D., Marquez, Y., Kusenda, B., Marshall, J., Fuller, J., Cardle, L., McNicol, J., Dinh, H. Q., Barta, A. & Brown, J. W. S. Mar-2012 In : Nucleic Acids Research. 40, 6, p. 2454-2469, 16 p.

    Research output: Contribution to journal › Article

  71. Bio-fortification of potato tubers using foliar zinc-fertiliser

    White, P. J., Broadley, M. R., Hammond, J. P., Ramsay, G., Subramanian, N. K., Thompson, J. & Wright, G. Mar-2012 In : Journal of Horticultural Science & Biotechnology. 87, 2, p. 123-129, 7 p.

    Research output: Contribution to journal › Article

  72. Islands and streams: clusters and gene flow in wild barley populations from the Levant

    Huebner, S., Guenther, T., Flavell, A., Fridman, E., Graner, A., Korol, A. & Schmid, K. J. Mar-2012 In : Molecular Ecology. 21, 5, p. 1115-1129, 15 p.

    Research output: Contribution to journal › Article

  73. Predicting Penetrometer Resistance from the Compression Characteristic of Soil

    Gao, W., Ren, T., Bengough, A. G., Auneau, L., Watts, C. W. & Whalley, W. R. Mar-2012 In : Soil Science Society of America Journal. 76, 2, p. 361-369, 9 p.

    Research output: Contribution to journal › Article

  74. Identification and localisation of the NB-LRR gene family within the potato genome

    Jupe, F., Pritchard, L., Etherington, G. J., MacKenzie, K., Cock, P. J. A., Wright, F., Sharma, S. K., Bolser, D., Bryan, G. J., Jones, J. D. G. & Hein, I. 15-Feb-2012 In : BMC Genomics. 13, p. -, 14 p., 75

    Research output: Contribution to journal › Article

  75. Host-targeting protein 1 (SpHtp1) from the oomycete Saprolegnia parasitica translocates specifically into fish cells in a tyrosine-O-sulphate-dependent manner

    Wawra, S., Bain, J., Durward, E., de Bruijn, I., Minor, K. L., Matena, A., Loebach, L., Whisson, S. C., Bayer, P., Porter, A. J., Birch, P. R. J., Secombes, C. J. & van West, P. 7-Feb-2012 In : Proceedings of the National Academy of Sciences of the United States of America. 109, 6, p. 2096-2101, 6 p.

    Research output: Contribution to journal › Article

  76. A mathematical model of mucilage expansion in myxospermous seeds of Capsella bursa-pastoris (shepherd's purse)

    Deng, W., Jeng, D-S., Toorop, P. E., Squire, G. R. & Iannetta, P. P. M. Feb-2012 In : Annals of Botany. 109, 2, p. 419-427, 9 p.

    Research output: Contribution to journal › Article

  77. Opportunities for improving phosphorus-use efficiency in crop plants

    Veneklaas, E. J., Lambers, H., Finnegan, P. M., Price, C. A., Shane, M. W., Raven, J. A., Bragg, J., Lovelock, C. E., Plaxton, W. C., Scheible, W-R. & White, P. J. 1-Jan-2012 In : New Phytologist. p. 306-320, 15 p.

    Research output: Contribution to journal › Article

  78. The application of LTR retrotransposons as molecular markers in plants

    Schulman, A. H., Flavell, A. J., Paux, E. & Ellis, T. H. N. 1-Jan-2012 Mobile genetic elements: protocols and genomic applications. Walker, J. M. & Bigot, Y. (eds.). 2nd ed. New York: Springer, Vol. 859, p. 115-153 39 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Other chapter contribution

  79. Analyzing lateral root development: how to move forward

    Bengough, A. G. & 23 others De Smet, I., White, P. J., Dupuy, L., Parizot, B., Casimiro, I., Heidstra, R., Laskowski, M., Lepetit, M., Hochholdinger, F., Draye, X., Zhang, H., Broadley, M. R., Peret, B., Hammond, J. P., Fukaki, H., Mooney, S., Lynch, J. P., Nacry, P., Schurr, U., Laplaze, L., Benfey, P., Beeckman, T. & Bennett, M. Jan-2012 In : Plant Cell. 24, 1, p. 15-20, 6 p.

    Research output: Contribution to journal › Editorial

  80. Centrifuge modelling of soil slopes containing model plant roots

    Sonnenberg, R., Bransby, M. F., Bengough, A. G., Hallett, P. D. & Davies, M. C. R. Jan-2012 In : Canadian Geotechnical Journal. 49, 1, p. 117, 17 p.

    Research output: Contribution to journal › Article

  81. Nucleoli: composition, function, and dynamics

    Shaw, P. & Brown, J. Jan-2012 In : Plant Physiology. 158, 1, p. 44-51, 8 p.

    Research output: Contribution to journal › Article

  82. Algal biogeography: Metagenomics shows distribution of a picoplanktonic pelagophyte

    Raven, J. A. 2012 In : Current Biology. 22, 17

    Research output: Contribution to journal › Article

  83. Alternative splicing in plants-coming of age

    Hasan-Syed, N., Kalyna, M., Marquez, Y., Barta, A. & Brown, J. W. S. 2012 In : Trends in Plant Science. 17, 10, p. 616-623, 8 p.

    Research output: Contribution to journal › Article

  84. Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes

    James, A. B., Bordage, S., Nimmo, G. A., Jenkins, G. I., Herzyk, P., Nimmo, H. G., Syed, N. H., Marshall, J. & Brown, J. W. S. 2012 In : Plant Cell. 24, 3, p. 961-981, 21 p.

    Research output: Contribution to journal › Article

  85. Avirulence protein 3a (AVR3a) from the potato pathogen Phytophthora infestans forms homodimers through its predicted translocation region and does not specifically bind phospholipids

    Wawra, S., Agacan, M., Boddey, J. A., Davidson, I., Gachon, C. M. M., Zanda, M., Grouffaud, S., Whisson, S. C., Birch, P. R. J., Porter, A. J. & Van West, P. 2012 In : Journal of Biological Chemistry. 287, 45, p. 38101-38109, 9 p.

    Research output: Contribution to journal › Article

  86. Bioindication potential of using molecular characterisation of the nematode community: response to soil tillage

    Griffiths, B. S., Daniell, T. J., Donn, S. & Neilson, R. 2012 In : European Journal of Soil Biology. 49, p. 92-97, 6 p.

    Research output: Contribution to journal › Article

  87. Changes in pH at the exterior surface of plankton with ocean acidification

    Flynn, K. J., Blackford, J. C., Baird, M. E., Raven, J. A., Clark, D. R., Beardall, J., Brownlee, C., Fabian, H. & Wheeler, G. L. 2012 In : Nature Climate Change. 2, 7, p. 510-513, 4 p.

    Research output: Contribution to journal › Article

  88. Comparison of effects of biguanide and diguanidine antihyperglycaemic drugs on cell signalling responses

    Bacon, S., Harthill, J., Coats, J., Stewart, D., McDougall, G. & Rena, G. 2012

    Research output: Contribution to conference › Poster

  89. Comparison of effects of biguanide and diguanidine antihyperglycaemic drugs on cell signalling responses

    Bacon, S., Harthill, J., Coates, J., Stewart, D., McDougall, G. & Rena, G. 2012 In : Diabetic Medicine. 29, Suppl. 1, p. 41, 1 p., P41

    Research output: Contribution to journal › Meeting abstract

  90. Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes

    Palomares-Rius, J. E., Hedley, P. E., Cock, P. J. A., Morris, J. A., Jones, J. T., Vovlas, N. & Blok, V. 2012 In : Molecular Plant Pathology. 13, 9, p. 1120-1134, 15 p.

    Research output: Contribution to journal › Article

  91. Control of foliar diseases in barley: towards an integrated approach

    Walters, D. R., Avrova, A., Bingham, I. J., Burnett, F. J., Fountaine, J., Havis, N. D., Hoad, S. P., Hughes, G., Looseley, M., Oxley, S. J. P., Renwick, A., Topp, C. F. E. & Newton, A. C. 2012 In : European Journal of Plant Pathology. 133, 1, p. 33-73, 41 p.

    Research output: Contribution to journal › Article

  92. Dietary requirements for magnesium, but not calcium, are likely to be met in Malawi based on national food supply data

    Broadley, M. R., Chilimba, A. D. C., Joy, E. J. M., Young, S. D., Black, C. R., Ander, L. E., Watts, M. J., Hurst, R., Fairweather-Tait, S. J., White, P. J. & Gibson, R. S. 2012 In : International Journal for Vitamin and Nutrition Research. 82, 3, p. 192-199, 8 p.

    Research output: Contribution to journal › Article

  93. Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation

    Sherstnev, A., Duc, C., Cole, C., Zacharaki, V., Hornyik, C., Ozsolak, F., Milos, P. M., Barton, G. J. & Simpson, G. G. 2012 In : Nature Structural & Molecular Biology.

    Research output: Contribution to journal › Article

  94. Ecophysiology of photosynthesis in macroalgae

    Raven, J. A. & Hurd, C. L. 2012 In : Photosynthesis Research. p. 105-125, 21 p.

    Research output: Contribution to journal › Article

  95. Genetic diversity in European Pisum germplasm collections

    Jing, R., Ambrose, M. A., Knox, M. R., Smykal, P., Hybl, M., Ramos, A., Caminero, C., Burstin, J., Duc, G., van Soest, L. J. M., Swiecicki, W. K., Pereira, M. G., Vishnyakova, M., Davenport, G. F., Flavell, A. J. & Ellis, T. H. N. 2012 In : Theoretical and Applied Genetics. 125, 2, p. 367-380, 14 p.

    Research output: Contribution to journal › Article

  96. Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici

    Huitema, E. & 34 others Lamour, K. H., Mudge, J., Gobena, D., Hurtado-Gonzales, O. P., Schmutz, J., Kuo, A., Miller, N. A., Rice, B. J., Raffaele, S., Cano, L. M., Bharti, A. K., Donahoo, R. S., Finley, S., Hulvey, J., Platt, D., Salamov, A., Savidor, A., Sharma, R., Stam, R., Storey, D., Thines, M., Win, J., Haas, B. J., Dinwiddie, D. L., Jenkins, J., Knight, J. R., Affourtit, J. P., Han, C. S., Chertkov, O., Lindquist, E. A., Detter, C., Grigoriev, I. V., Kamoun, S. & Kingsmore, S. F. 2012 In : Molecular Plant - Microbe Interactions. 25, 10, p. 1350-60, 11 p.

    Research output: Contribution to journal › Article

  97. Oviposition and feeding behaviour by the vine weevil Otiorhynchus sulcatus on red raspberry: effects of cultivars and plant nutritional status

    Clark, K. E., Hartley, S. E., Brennan, R. M., MacKenzie, K. & Johnson, S. N. 2012 In : Agricultural and Forest Entomology. 14, 2, p. 157-163, 7 p.

    Research output: Contribution to journal › Article

  98. Protected raspberry production alters aphid-plant interactions but not aphid population size

    Johnson, S. N., Young, M. W. & Karley, A. J. 2012 In : Agricultural and Forest Entomology. 14, 2, p. 217-224, 8 p.

    Research output: Contribution to journal › Article

  99. Soil fungal community composition does not alter along a latitudinal gradient through the maritime and sub-Antarctic

    Dennis, P. G., Rushton, S. P., Newsham, K. K., Laudicina, V. A., Ord, V. J., Daniell, T. J., O'Donnell, A. G. & Hopkins, D. W. 2012 In : Fungal Ecology. 5, 6, p. 759-759, 1 p.

    Research output: Contribution to journal › Article

  100. Tibet is one of the centers of domestication of cultivated barley

    Dai, F., Nevo, E., Wu, D., Comadran, J., Zhou, M., Qiu, L., Chen, Z., Beiles, A., Chen, G. & Zhang, G. 2012 In : Proceedings of the National Academy of Sciences of the United States of America. 109, 42, p. 16969-16973, 5 p.

    Research output: Contribution to journal › Article

  101. Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

    Marquez, Y., Brown, J. W. S., Simpson, C., Barta, A. & Kalyna, M. 2012 In : Genome Research. 22, 6, p. 1184-1195, 12 p.

    Research output: Contribution to journal › Article

  102. Water dynamics of the root zone: rhizosphere biophysics and its control on soil hydrology

    Bengough, A. G. 2012 In : Vadose Zone Journal. 11, 2

    Research output: Contribution to journal › Article

  103. Phytophthora infestans effector AVRblb2 prevents secretion of a plant immune protease at the haustorial interface

    Bozkurt, T. O., Schornack, S., Win, J., Shindo, T., Ilyas, M., Oliva, R., Cano, L. M., Jones, A. M. E., Huitema, E., van der Hoorn, R. A. L. & Kamoun, S. 20-Dec-2011 In : Proceedings of the National Academy of Sciences of the United States of America. 108, 51, p. 20832-20837, 6 p.

    Research output: Contribution to journal › Article

  104. The ankyrin repeats and DHHC S-acyl transferase domain of AKR1 act independently to regulate switching from vegetative to mating states in yeast

    Hemsley, P. A. & Grierson, C. S. 8-Dec-2011 In : PLoS ONE. 6, 12, e28799

    Research output: Contribution to journal › Article

  105. Exploiting Knowledge of Pathogen Effectors to Enhance Late Blight Resistance in Potato

    Whisson, S. C., Avrova, A. O., Boevink, P. C., Armstrong, M. R., Seman, Z. A., Hein, I. & Birch, P. R. J. Dec-2011 In : Potato Research. 54, 4, p. 325-340, 16 p.

    Research output: Contribution to journal › Article

  106. Paternal leakage of mitochondrial DNA in experimental crosses of populations of the potato cyst nematode Globodera pallida

    Hoolahan, A. H., Blok, V. C., Gibson, T. & Dowton, M. Dec-2011 In : Genetica. 139, 11-12, p. 1509-1519, 11 p.

    Research output: Contribution to journal › Article

  107. Syringyl lignin is unaltered by severe sinapyl alcohol dehydrogenase suppression in tobacco

    Barakate, A., Stephens, J., Goldie, A., Hunter, W. N., Marshall, D., Hancock, R. D., Lapierre, C., Morreele, K., Boerjane, W. & Halpin, C. Dec-2011 In : Plant Cell. 23, 12, p. 4492-4506, 15 p.

    Research output: Contribution to journal › Article

  108. Two RNA-binding sites in plant fibrillarin provide interactions with various RNA substrates

    Rakitina, D. V., Taliansky, M., Brown, J. W. S. & Kalinina, N. O. Nov-2011 In : Nucleic Acids Research. 39, 20, p. 8869-8880

    Research output: Contribution to journal › Article

  109. Automated motion estimation of root responses to sucrose in two Arabidopsis thaliana genotypes using confocal microscopy

    Wuyts, N., Bengough, A. G., Roberts, T. J., Du, C., Bransby, M. F., McKenna, S. J. & Valentine, T. A. Oct-2011 In : Planta. 234, 4, p. 769-784, 16 p.

    Research output: Contribution to journal › Article

  110. Transcriptome sequencing of an ecologically important graminivorous sawfly: a resource for marker development

    Cook, N., Aziz, N., Hedley, P. E., Morris, J., Milne, L., Karley, A. J., Hubbard, S. F. & Russell, J. R. Oct-2011 In : Conservation Genetics Resources. 3, 4, p. 789-795, 7 p.

    Research output: Contribution to journal › Scientific review

  111. A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization

    Gkikopoulos, T., Schofield, P., Singh, V., Pinskaya, M., Mellor, J., Smolle, M., Workman, J. L., Barton, G. J. & Owen-Hughes, T. 23-Sep-2011 In : Science. 333, 6050, p. 1758-1760, 3 p.

    Research output: Contribution to journal › Article

  112. Locus-dependent selection in crop-wild hybrids of lettuce under field conditions and its implication for GM crop development

    Hooftman, D. A. P., Flavell, A. J., Jansen, H., den Nijs, H. C. M., Syed, N. H., Sorensen, A. P., Orozco-ter Wengel, P. & van de Wiel, C. C. M. Sep-2011 In : Evolutionary Applications. 4, 5, p. 648-659, 12 p.

    Research output: Contribution to journal › Article

  113. Legume genetic resources: management, diversity assessment, and utilization in crop improvement

    Upadhyaya, H. D., Dwivedi, S. L., Ambrose, M., Ellis, N., Berger, J., Smykal, P., Debouck, D., Duc, G., Dumet, D., Flavell, A., Sharma, S. K., Mallikarjuna, N. & Gowda, C. L. L. Jul-2011 In : Euphytica. 180, 1, p. 27-47, 21 p.

    Research output: Contribution to journal › Article

  114. Crops that feed the world 4. Barley: a resilient crop?: Strengths and weaknesses in the context of food security

    Newton, A. C., Flavell, A. J., George, T. S., Leat, P., Mullholland, B., Ramsay, L., Revoredo-Giha, C., Russell, J., Steffenson, B. J., Swanston, J. S., Thomas, W. T. B., Waugh, R., White, P. J. & Bingham, I. J. Jun-2011 In : Food Security. 3, 2, p. 141-178, 38 p.

    Research output: Contribution to journal › Article

  115. The SWI/SNF complex acts to constrain distribution of the centromeric histone variant Cse4

    Gkikopoulos, T., Singh, V., Tsui, K., Awad, S., Renshaw, M. J., Scholfield, P., Barton, G. J., Nislow, C., Tanaka, T. U. & Owen-Hughes, T. 18-May-2011 In : EMBO Journal. 30, 10, p. 1919-1927, 9 p.

    Research output: Contribution to journal › Article

  116. Analysis of plant diversity with retrotransposon-based molecular markers

    Kalendar, R., Flavell, A. J., Ellis, T. H. N., Sjakste, T., Moisy, C. & Schulman, A. H. Apr-2011 In : Heredity. 106, 4, p. 520-530, 11 p.

    Research output: Contribution to journal › Scientific review

  117. Phylogeny, phylogeography and genetic diversity of the Pisum genus

    Smykal, P., Kenicer, G., Flavell, A. J., Corander, J., Kosterin, O., Redden, R. J., Ford, R., Coyne, C. J., Maxted, N., Ambrose, M. J. & Ellis, N. T. H. Apr-2011 In : Plant Genetic Resources - Characterization and Utilization. 9, 1, p. 418, 15 p.

    Research output: Contribution to journal › Article

  118. Genetic diversity among Spanish pea (Pisum sativum L.) landraces, pea cultivars and the World Pisum sp core collection assessed by retrotransposon-based insertion polymorphisms (RBIPs)

    Martin-Sanz, A., Caminero, C., Jing, R., Flavell, A. J. & Perez de la Vega, M. Mar-2011 In : Spanish Journal of Agricultural Research. 9, 1, p. 166-178, 13 p.

    Research output: Contribution to journal › Article

  119. Imaging fluorescently tagged Phytophthora effector proteins inside infected plant tissue

    Boevink, P. C., Birch, P. R. & Whisson, S. C. 1-Jan-2011 Plant immunity: Methods and protocols. McDowell, J. D. (ed.). New York: Humana Press, Vol. 712, p. 195-209 15 p. (Methods in molecular biology).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

  120. Root elongation, water stress, and mechanical impedance: a review of limiting stresses and beneficial root tip traits

    Bengough, A. G., McKenzie, B. M., Hallett, P. D. & Valentine, T. A. Jan-2011 In : Journal of Experimental Botany. 62, 1, p. 59-68, 10 p.

    Research output: Contribution to journal › Scientific review

  121. ADS1 encodes a MATE-transporter that negatively regulates plant disease resistance

    Sun, X., Gilroy, E. M., Chini, A., Nurmberg, P. L., Hein, I., Lacomme, C., Birch, P. R. J., Hussain, A., Yun, B-W. & Loake, G. J. 2011 In : New Phytologist. 192, 2, p. 471-482, 12 p.

    Research output: Contribution to journal › Article

  122. Analysis of > 1000 single nucleotide polymorphisms in geographically matched samples of landrace and wild barley indicates secondary contact and chromosome-level differences in diversity around domestication genes

    Russell, J., Dawson, I. K., Flavell, A. J., Steffenson, B., Weltzien, E., Booth, A., Ceccarelli, S., Grando, S. & Waugh, R. 2011 In : New Phytologist. 191, 2, p. 564-578, 15 p.

    Research output: Contribution to journal › Article

  123. CMPG1-dependent cell death follows perception of diverse pathogen elicitors at the host plasma membrane and is suppressed by Phytophthora infestans RXLR effector AVR3a

    Gilroy, E. M., Taylor, R. M., Hein, I., Boevink, P., Sadanandom, A. & Birch, P. R. J. 2011 In : New Phytologist. 190, 3, p. 653-666, 14 p.

    Research output: Contribution to journal › Article

  124. Interventions for preventing oral mucositis for patients with cancer receiving treatment

    Worthington, H., Clarkson, J. E., Bryan, G., Furness, S., Glenny, A. M., Littlewood, A., McCabe, M. G., Meyer, S. & Khalid, T. 2011 In : Cochrane Database of Systematic Reviews. 4, p. -, 276 p., CD000978

    Research output: Contribution to journal › Scientific review

  125. Presence/absence, differential expression and sequence polymorphisms between PiAVR2 and PiAVR2-like in Phytophthora infestans determine virulence on R2 plants

    Gilroy, E. M. , Breen, S. , Whisson, S. C. , Squires, J. , Hein, I. , Kaczmarek, M. , Turnbull, D. , Boevink, P. C. , Lokossou, A. , Cano, L. M. , Morales, J. , Avrova, A. O. , Pritchard, L. , Randall, E. , Lees, A. , Govers, F. , van West, P. , Kamoun, S. , Vleeshouwers, V. G. A. A. , Cooke, D. E. L. & 1 others Birch, P. R. J. 2011 In : New Phytologist. 191, 3, p. 763-776, 14 p.

    Research output: Contribution to journal › Article

  126. Flapjack-graphical genotype visualization

    Milne, I., Shaw, P., Stephen, G., Bayer, M., Cardle, L., Thomas, W. T. B., Flavell, A. J. & Marshall, D. 15-Dec-2010 In : Bioinformatics. 26, 24, p. 3133-3134, 2 p.

    Research output: Contribution to journal › Article

  127. Centrifuge modelling of soil slopes reinforced with vegetation

    Sonnenberg, R., Bransby, M. F., Hallett, P. D., Bengough, A. G., Mickovski, S. B. & Davies, M. C. R. Dec-2010 In : Canadian Geotechnical Journal. 47, 12, p. 1415-1430, 16 p.

    Research output: Contribution to journal › Article

  128. Noncanonical Translation Initiation of the Arabidopsis Flowering Time and Alternative Polyadenylation Regulator FCA

    Simpson, G. G., Laurie, R. E., Dijkwel, P. P., Quesada, V., Stockwell, P. A., Dean, C. & Macknight, R. C. Nov-2010 In : Plant Cell. 22, 11, p. 3764-3777, 14 p.

    Research output: Contribution to journal › Article

  129. Whole-genome association mapping in elite inbred crop varieties

    Waugh, R., Marshall, D., Thomas, B., Comadran, J., Russell, J., Close, T., Stein, N., Hayes, P., Muehlbauer, G., Cockram, J., O'Sullivan, D., MacKay, I., Flavell, A., Ramsay, L. & AGOUEB, BarleyCAP Nov-2010 In : Genome Biology. 53, 11, p. 967-972, 6 p.

    Research output: Contribution to journal › Article

  130. Automated saccharification assay for determination of digestibility in plant materials

    Gomez, L. D., Whitehead, C., Barakate, A., Halpin, C. & McQueen-Mason, S. J. 27-Oct-2010 In : Biotechnology for Biofuels. 3, p. -, 12 p., 23

    Research output: Contribution to journal › Article

  131. Ancient class of translocated oomycete effectors targets the host nucleus

    Schornack, S., van Damme, M., Bozkurt, T. O., Cano, L. M., Smoker, M., Thines, M., Gaulin, E., Kamoun, S. & Huitema, E. 5-Oct-2010 In : Proceedings of the National Academy of Sciences of the United States of America. 107, 40, p. 17421-17426, 6 p.

    Research output: Contribution to journal › Article

  132. Estimating the motion of plant root cells from in vivo confocal laser scanning microscopy images

    Roberts, T. J., McKenna, S. J., Du, C-J., Wuyts, N., Valentine, T. A. & Bengough, A. G. Oct-2010 In : Machine Vision and Applications. 21, 6, p. 921-939, 19 p.

    Research output: Contribution to journal › Article

  133. Neighbourhood deprivation and the price and availability of fruit and vegetables in Scotland

    Cummins, S., Smith, D. M., Aitken, Z., Dawson, J., Marshall, D., Sparks, L. & Anderson, A. S. Oct-2010 In : Journal of Human Nutrition and Dietetics. 23, 5, p. 494-501, 8 p.

    Research output: Contribution to journal › Article

  134. Alternative polyadenylation of antisense RNAs and flowering time control

    Hornyik, C., Duc, C., Rataj, K., Terzi, L. C. & Simpson, G. G. Aug-2010 In : Biochemical Society Transactions. 38, p. 1077-1081, 5 p.

    Research output: Contribution to journal › Article

  135. Insect endosymbionts: manipulators of insect herbivore trophic interactions?

    Clark, E. L., Karley, A. J. & Hubbard, S. F. Aug-2010 In : Protoplasma. 244, 1-4, p. 25-51, 27 p.

    Research output: Contribution to journal › Scientific review

  136. Recent developments in effector biology of filamentous plant pathogens (vol 12, pg 705, 2010)

    Oliva, R., Win, J., Raffaele, S., Boutemy, L., Bozkurt, T. O., Chaparro-Garcia, A., Segretin, M. E., Stam, R., Schornack, S., Cano, L. M., van Damme, M., Huitema, E., Thines, M., Banfield, M. J. & Kamoun, S. Jul-2010 In : Cellular Microbiology. 12, 7, p. 1015-1015, 1 p.

    Research output: Contribution to journal › Article

  137. The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies

    Joshi, M. V., Mann, S. G., Antelmann, H., Widdick, D. A., Fyans, J. K., Chandra, G., Hutchings, M. I., Toth, I., Hecker, M., Loria, R. & Palmer, T. Jul-2010 In : Molecular Microbiology. 77, 1, p. 252-271, 20 p.

    Research output: Contribution to journal › Article

  138. Below-ground herbivory and root toughness: a potential model system using lignin-modified tobacco

    Johnson, S. N., Hallett, P. D., Gillespie, T. L. & Halpin, C. Jun-2010 In : Physiological Entomology. 35, 2, p. 186-191, 6 p.

    Research output: Contribution to journal › Article

  139. Combining plant resistance and a natural enemy to control Amphorophora idaei

    Mitchell, C., Johnson, S. N., Gordon, S. C., Birch, A. N. E. & Hubbard, S. F. Jun-2010 In : BioControl. 55, 3, p. 321-327, 7 p.

    Research output: Contribution to journal › Article

  140. Genome Sequence of Pantoea ananatis LMG20103, the Causative Agent of Eucalyptus Blight and Dieback

    De Maayer, P., Chan, W. Y., Venter, S. N., Toth, I. K., Birch, P. R. J., Joubert, F. & Coutinho, T. A. Jun-2010 In : Journal of Bacteriology. 192, 11, p. 2936-2937, 2 p.

    Research output: Contribution to journal › Article

  141. Recent developments in effector biology of filamentous plant pathogens

    Oliva, R., Win, J., Raffaele, S., Boutemy, L., Bozkurt, T. O., Chaparro-Garcia, A., Segretin, M. E., Stam, R., Schornack, S., Cano, L. M., van Damme, M., Huitema, E., Thines, M., Banfield, M. J. & Kamoun, S. Jun-2010 In : Cellular Microbiology. 12, 6, p. 705-715, 11 p.

    Research output: Contribution to journal › Scientific review

  142. Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1

    Bos, J. I. B., Armstrong, M. R., Gilroy, E. M., Boevink, P. C., Hein, I., Taylor, R. M., Tian Zhendong, . N. V., Engelhardt, S., Vetukuri, R. R., Harrower, B., Dixelius, C., Bryan, G., Sadanandom, A., Whisson, S. C., Kamoun, S. & Birch, P. R. J. 25-May-2010 In : Proceedings of the National Academy of Sciences of the United States of America. 107, 21, p. 9909-9914, 6 p.

    Research output: Contribution to journal › Article

  143. Root growth models: Towards a new generation of continuous approaches

    Dupuy, L., Gregory, P. J. & Bengough, A. G. 1-May-2010 In : Journal of Experimental Botany. 61, 8, p. 2131-2143, 13 p.

    Research output: Contribution to journal › Article

  144. Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype data

    Moragues , M., Comadran, J., Waugh, R., Milne, I., Flavell, A. J. & Russell, J. R. May-2010 In : Theoretical and Applied Genetics. 120, 8, p. 1525-1534, 10 p.

    Research output: Contribution to journal › Article

  145. Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli

    Kim, S. H., Spensley, M., Choi, S. K., Calixto, C. P. G., Pendle, A. F., Koroleva, O., Shaw, P. J. & Brown, J. W. S. May-2010 In : Nucleic Acids Research. 38, 9, p. 3054-3067, 14 p.

    Research output: Contribution to journal › Article

  146. Comparative Genome Analysis Provides Insights into the Evolution and Adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum

    Green, S., Studholme, D. J., Laue, B. E., Dorati, F., Lovell, H., Arnold, D., Cottrell, J. E., Bridgett, S., Blaxter, M., Huitema, E., Thwaites, R., Sharp, P. M., Jackson, R. W. & Kamoun, S. 19-Apr-2010 In : PLoS ONE. 5, 4, p. -, 14 p., e10224

    Research output: Contribution to journal › Article

  147. Regulation of plant gene expression by alternative splicing

    Simpson, C. G., Manthri, S., Raczynska, K. D., Kalyna, M., Lewandowska, D., Kusenda, B., Maronova, M., Szweykowska-Kulinska, Z., Jarmolowski, A., Barta, A. & Brown, J. W. S. Apr-2010 In : Biochemical Society Transactions. 38, 2, p. 667-671, 5 p.

    Research output: Contribution to journal › Article

  148. Stomatal vs. genome size in angiosperms: the somatic tail wagging the genomic dog?

    Hodgson, J. G. , Sharafi, M. , Jalili, A. , Diaz, S. , Montserrat-Marti, G. , Palmer, C. , Cerabolini, B. , Pierce, S. , Hamzehee, B. , Asri, Y. , Jamzad, Z. , Wilson, P. , Raven, J. A. , Band, S. R. , Basconcelo, S. , Bogard, A. , Carter, G. , Charles, M. , Castro-Diez, P. , Cornelissen, J. H. C. & 22 others Funes, G., Jones, G., Khoshnevis, M., Perez-Harguindeguy, N., Perez-Rontome, M. C., Shirvany, F. A., Vendramini, F., Yazdani, S., Abbas-Azimi, R., Boustani, S., Dehghan, M., Guerrero-Campo, J., Hynd, A., Kowsary, E., Kazemi-Saeed, F., Siavash, B., Villar-Salvador, P., Craigie, R., Naqinezhad, A., Romo-Diez, A., de Torres Espuny, L. & Simmons, E. Apr-2010 In : Annals of Botany. 105, 4, p. 573-584, 12 p.

    Research output: Contribution to journal › Article

  149. Protein localization and dynamics within a bacterial organelle

    Hughes, H. V., Huitema, E., Pritchard, S., Keiler, K. C., Brun, Y. V. & Viollier, P. H. 23-Mar-2010 In : Proceedings of the National Academy of Sciences of the United States of America. 107, 12, p. 5599-5604, 6 p.

    Research output: Contribution to journal › Article

  150. Planting density influence on fibrous root reinforcement of soils

    Loades, K. W., Bengough, A. G., Bransby, M. F. & Hallett, P. D. Mar-2010 In : Ecological Engineering. 36, 3, p. 276-284, 9 p.

    Research output: Contribution to journal › Article

  151. The Spen Family Protein FPA Controls Alternative Cleavage and Polyadenylation of RNA

    Hornyik, C., Terzi, L. C. & Simpson, G. G. 16-Feb-2010 In : Developmental Cell. 18, 2, p. 203-213, 11 p.

    Research output: Contribution to journal › Article

  152. The genetic diversity and evolution of field pea (Pisum) studied by high throughput retrotransposon based insertion polymorphism (RBIP) marker analysis

    Jing, R., Vershinin, A., Grzebyta, J., Shaw, P., Smykal, P., Marshall, D., Ambrose, M. J., Ellis, T. H. N. & Flavell, A. J. 15-Feb-2010 In : BMC Evolutionary Biology. 10, p. -, 20 p., 44

    Research output: Contribution to journal › Article

  153. Modelling contact spread of infection in host-parasitoid systems: Vertical transmission of pathogens can cause chaos

    Preedy, K. F., Schofield, P. G., Liu, S., Matzavinos, A., Chaplain, M. A. J. & Hubbard, S. F. 7-Feb-2010 In : Journal of Theoretical Biology. 262, 3, p. 441-451, 11 p.

    Research output: Contribution to journal › Article

  154. PIV as a Method for Quantifying Root Cell Growth and Particle Displacement in Confocal Images

    Bengough, A. G., Hans, J., Bransby, M. F. & Valentine, T. A. Jan-2010 In : Microscopy Research and Technique. 73, 1, p. 27-36, 10 p.

    Research output: Contribution to journal › Article

  155. Resistance of simple plant root systems to uplift loads

    Mickovski, S. B., Bransby, M. F., Bengough, A. G., Davies, M. C. R. & Hallett, P. D. Jan-2010 In : Canadian Geotechnical Journal. 47, 1, p. 78-95, 18 p.

    Research output: Contribution to journal › Article

  156. A methyl transferase links the circadian clock to the regulation of alternative splicing

    Sanchez, S. E., Petrillo, E., Beckwith, E. J., Zhang, X., Rugnone, M. L., Hernando, C. E., Cuevas, J. C., Godoy Herz, M. A., Depetris-Chauvin, A., Simpson, C. G., Brown, J. W. S., Cerdán, P. D., Borevitz, J. O., Mas, P., Ceriani, M. F., Kornblihtt, A. R. & Yanovsky, M. J. 2010 In : Nature. 468, 7320, p. 112-116, 5 p.

    Research output: Contribution to journal › Article

  157. Centrifuge modelling of root reinforcement of slopes

    Sonnenberg, R., Bransby, M. F., Hallett, P. D., Bengough, A. G. & Davies, M. C. R. 2010 Physical Modelling in Geotechnics: proceedings of the 7th International Conference on Physical Modelling in Geotechnics (ICPMG 2010). Seward, L. (ed.). London: CRC Press, Vol. 2, p. 1137-1142 6 p.

    Research output: Chapter in Book/Report/Conference proceeding › Other chapter contribution

  158. Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

    Huitema, E. & 47 others Levesque, C. A., Brouwer, H., Cano, L., Hamilton, J. P., Holt, C., Raffaele, S., Robideau, G. P., Thines, M., Win, J., Zerillo, M. M., Beakes, G. W., Boore, J. L., Busam, D., Dumas, B., Ferriera, S., Fuerstenberg, S. I., Gachon, C. M. M., Gaulin, E., Govers, F., Grenville-Briggs, L., Horner, N., Hostetler, J., Jiang, R. H. Y., Johnson, J., Krajaejun, T., Lin, H., Meijer, H. J. G., Moore, B., Morris, P., Phuntmart, V., Puiu, D., Shetty, J., Stajich, J. E., Tripathy, S., Wawra, S., van West, P., Whitty, B. R., Coutinho, P. M., Henrissat, B., Martin, F., Thomas, P. D., Tyler, B. M., De Vries, R. P., Kamoun, S., Yandell, M., Tisserat, N. & Buell, C. R. 2010 In : Genome Biology. 11, 7, p. -, 22 p., R73

    Research output: Contribution to journal › Article

  159. Geomicrobiology of Eukaryotic Microorganisms

    Gadd, G. M. & Raven, J. A. 2010 In : Geomicrobiology Journal. 27, 6-7, p. 491-519, 29 p.

    Research output: Contribution to journal › Article

  160. Introduction

    Gadd, G. M. & Raven, J. A. 2010 In : Geomicrobiology Journal. 27, 6-7, p. 489-490, 2 p.

    Research output: Contribution to journal › Editorial

  161. Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana

    Raczynska, K. D., Simpson, C. G., Ciesiolka, A., Szewc, L., Lewandowska, D., McNicol, J., Szweykowska-Kulinska, Z., Brown, J. W. S. & Jarmolowski, A. 2010 In : Nucleic Acids Research. 38, 1, p. 265-278, 14 p.

    Research output: Contribution to journal › Article

  162. Reverse engineering gene regulatory networks related to quorum sensing in the plant pathogen Pectobacterium atrosepticum.

    Lin, K., Husmeier, D., Dondelinger, F., Mayer, C. D., Liu, H., Pritchard, L., Salmond, G. P. C., Toth, I. K. & Birch, P. R. J. 2010 Computational biology. Fenyo, D. (ed.). New York: Humana Press, p. 253-281 29 p. (Methods in Molecular Biology; 673). (Springer protocols).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  163. Towards an understanding on how RxLR-effector proteins are translocated from oomycetes into host cells

    Grouffaud, S., Whisson, S. C., Birch, P. R. J. & West, P. V. 2010 In : Fungal Biology Reviews. 24, 1-2, p. 27-36

    Research output: Contribution to journal › Scientific review

  164. Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

    Cole, C., Sobala, A., Lu, C., Thatcher, S. R., Bowman, A., Brown, J. W. S., Green, P. J., Barton, G. J. & Hutvagner, G. Dec-2009 In : RNA: a Publication of the RNA Society. 15, 12, p. 2147-2160, 14 p.

    Research output: Contribution to journal › Article

  165. Localization of eIF4A-III in the nucleolus and splicing speckles is an indicator of plant stress

    Koroleva, O. A., Brown, J. W. S. & Shaw, P. J. Dec-2009 In : Plant Signaling and Behavior. 4, 12, p. 1148-1151

    Research output: Contribution to journal › Article

  166. Molecular markers for the identification of resistance genes and marker-assisted selection in breeding wheat for leaf rust resistance

    Vida, G., Gal, M., Uhrin, A., Veisz, O., Hasan-Syed, N., Flavell, A. J., Wang, Z. & Bedo, Z. Nov-2009 In : Euphytica. 170, 1-2, p. 67-76, 10 p.

    Research output: Contribution to journal › Article

  167. Protein mislocalization in plant cells using a GFP-binding chromobody

    Schornack, S., Fuchs, R., Huitema, E., Rothbauer, U., Lipka, V. & Kamoun, S. Nov-2009 In : Plant Journal. 60, 4, p. 744-754, 11 p.

    Research output: Contribution to journal › Article

  168. Ten things to know about oomycete effectors

    Schornack, S., Huitema, E., Cano, L. M., Bozkurt, T. O., Oliva, R., van Damme, M., Schwizer, S., Raffaele, S., Chaparro-Garcia, A., Farrer, R., Segretin, M. E., Bos, J., Haas, B. J., Zody, M. C., Nusbaum, C., Win, J., Thines, M. & Kamoun, S. Nov-2009 In : Molecular Plant Pathology. 10, 6, p. 795-803, 9 p.

    Research output: Contribution to journal › Scientific review

  169. Variations in fresh fruit and vegetable quality by store type, urban-rural setting and neighbourhood deprivation in Scotland

    Cummins, S., Smith, D. M., Taylor, M., Dawson, J., Marshall, D., Sparks, L. & Anderson, A. S. Nov-2009 In : Public Health Nutrition. 12, 11, p. 2044-2050, 7 p.

    Research output: Contribution to journal › Article

  170. Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

    Huitema, E. & 95 others Haas, B. J., Kamoun, S., Zody, M. C., Jiang, R. H. Y., Handsaker, R. E., Cano, L. M., Grabherr, M., Kodira, C. D., Raffaele, S., Torto-Alalibo, T., Bozkurt, T. O., Ah-Fong, A. M. V., Alvarado, L., Anderson, V. L., Armstrong, M. R., Avrova, A., Baxter, L., Beynon, J., Boevink, P. C., Bollmann, S. R., Bos, J. I. B., Bulone, V., Cai, G., Cakir, C., Carrington, J. C., Chawner, M., Conti, L., Costanzo, S., Ewan, R., Fahlgren, N., Fischbach, M. A., Fugelstad, J., Gilroy, E. M., Gnerre, S., Green, P. J., Grenville-Briggs, L. J., Griffith, J., Gruenwald, N. J., Horn, K., Horner, N. R., Hu, C-H., Jeong, D-H., Jones, A. M. E., Jones, J. D. G., Jones, R. W., Karlsson, E. K., Kunjeti, S. G., Lamour, K., Liu, Z., Ma, L., MacLean, D., Chibucos, M. C., McDonald, H., McWalters, J., Meijer, H. J. G., Morgan, W., Morris, P. F., Munro, C. A., O'Neill, K., Ospina-Giraldo, M., Pinzon, A., Pritchard, L., Ramsahoye, B., Ren, Q., Restrepo, S., Roy, S., Sadanandom, A., Savidor, A., Schornack, S., Schwartz, D. C., Schumann, U. D., Schwessinger, B., Seyer, L., Sharpe, T., Silvar, C., Song, J., Studholme, D. J., Sykes, S., Thines, M., van de Vondervoort, P. J. I., Phuntumart, V., Wawra, S., Weide, R., Win, J., Young, C., Zhou, S., Fry, W., Meyers, B. C., van West, P., Ristaino, J., Govers, F., Birch, P. R. J., Whisson, S. C., Judelson, H. S. & Nusbaum, C. 17-Sep-2009 In : Nature. 461, 7262, p. 393-398, 6 p.

    Research output: Contribution to journal › Article

  171. Quantitative image analysis of earthworm-mediated soil displacement

    Barnett, C. M., Bengough, A. G. & McKenzie, B. M. Sep-2009 In : Biology and Fertility of Soils. 45, 8, p. 821-828, 8 p.

    Research output: Contribution to journal › Article

  172. Microarray Comparative Genomic Hybridisation Analysis Incorporating Genomic Organisation, and Application to Enterobacterial Plant Pathogens

    Pritchard, L., Liu, H., Booth, C., Douglas, E., Francois, P., Schrenzel, J., Hedley, P. E., Birch, P. R. J. & Toth, I. K. Aug-2009 In : PLoS Computational Biology. 5, 8, p. -, 17 p., e1000473

    Research output: Contribution to journal › Article

  173. Aberrant mRNA Transcripts and the Nonsense-Mediated Decay Proteins UPF2 and UPF3 Are Enriched in the Arabidopsis Nucleolus

    Kim, S. H., Koroleva, O. A., Lewandowska, D., Pendle, A. F., Clark, G. P., Simpson, C. G., Shaw, P. J. & Brown, J. W. S. Jul-2009 In : Plant Cell. 21, 7, p. 2045-2057, 13 p.

    Research output: Contribution to journal › Article

  174. Arabidopsis RNA immunoprecipitation

    Terzi, L. C. & Simpson, G. G. Jul-2009 In : Plant Journal. 59, 1, p. 163-168, 6 p.

    Research output: Contribution to journal › Article

  175. The zig-zag-zig in oomycete-plant interactions

    Hein, I., Gilroy, E. M., Armstrong, M. R. & Birch, P. R. J. Jul-2009 In : Molecular Plant Pathology. 10, 4, p. 547-562, 16 p.

    Research output: Contribution to journal › Scientific review

  176. Deep rooting and drought screening of cereal crops: a novel field-based method and its application

    McKenzie, B. M., Bengough, A. G., Hallett, P. D., Thomas, W. T. B., Forster, B. & McNicol, J. W. 26-Jun-2009 In : Field Crops Research. 112, 2-3, p. 165-171, 7 p.

    Research output: Contribution to journal › Scientific review

  177. Centrifuge modelling of climatic effects on clay embankments

    Hudacsek, P., Bransby, M. F., Hallett, P. D. & Bengough, G. Jun-2009 In : Proceedings of the Institution of Civil Engineers-Engineering Sustainability. 162, 2, p. 91-100, 10 p.

    Research output: Contribution to journal › Article

  178. Exploiting Knowledge of R/Avr Genes to Rapidly Clone a New LZ-NBS-LRR Family of Late Blight Resistance Genes from Potato Linkage Group IV

    Lokossou, A. A., Park, T., van Arkel, G., Arens, M., Ruyter-Spira, C., Morales, J., Whisson, S. C., Birch, P. R. J., Visser, R. G. F., Jacobsen, E. & van der Vossen, E. A. G. Jun-2009 In : Molecular Plant - Microbe Interactions. 22, 6, p. 630-641, 12 p.

    Research output: Contribution to journal › Article

  179. Using molecular phylogeny to investigate the bacteria associated with the cabbage aphid (Brevicoryne brassicae)

    Clark, E. L., Karley, A. J., Wishart, J., Daniell, T. J. & Hubbard, S. F. Jun-2009 In : Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. 153, 2; Suppl., p. S47-S47, 1 p., CSS.17

    Research output: Contribution to journal › Book/Film/Article review

  180. Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L.

    Kiaer, L. P., Felber, F., Flavell, A., Guadagnuolo, R., Guiatti, D., Hauser, T. P., Olivieri, A. M., Scotti, I., Syed, N., Vischi, M., van de Wiel, C. & Jorgensen, R. B. May-2009 In : Genetic Resources and Crop Evolution. 56, 3, p. 405-419, 15 p.

    Research output: Contribution to journal › Article

  181. Reply: A unified classification system for eukaryotic transposable elements should reflect their phylogeny

    Wicker, T., Sabot, F., Hua-Van, A., Bennetzen, J. L., Capy, P., Chalhoub, B., Flavell, A., Leroy, P., Morgante, M., Panaud, O., Paux, E., SanMiguel, P. & Schulman, A. H. Apr-2009 In : Nature Reviews Genetics. 10, 4, p. 276, 1 p.

    Research output: Contribution to journal › Letter

  182. Measuring root traits in barley (Hordeum vulgare ssp. vulgare and ssp. spontaneum) seedlings using gel chambers, soil sacs and X-ray microtomography

    Hargreaves, C. E., Gregory, P. J. & Bengough, A. G. Mar-2009 In : Plant and Soil. 316, 1-2, p. 285-297, 13 p.

    Research output: Contribution to journal › Article

  183. Towards understanding the virulence functions of RXLR effectors of the oomycete plant pathogen Phytophthora infestans

    Birch, P. R. J., Armstrong, M., Bos, J., Boevink, P., Gilroy, E. M., Taylor, R. M., Wawra, S., Pritchard, L., Conti, L., Ewan, R., Whisson, S. C., van West, P., Sadanandom, A. & Kamoun, S. Mar-2009 In : Journal of Experimental Botany. 60, 4, p. 1133-1140, 8 p.

    Research output: Contribution to journal › Scientific review

  184. Disentangling the impact of AM fungi versus roots on soil structure and water transport

    Hallett, P. D., Feeney, D. S., Bengough, A. G., Rillig, M. C., Scrimgeour, C. M. & Young, I. M. Jan-2009 In : Plant and Soil. 314, 1-2, p. 183-196, 14 p.

    Research output: Contribution to journal › Article

  185. Dynamic behavior of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia

    Koroleva, O. A., Calder, G., Pendle, A. F., Kim, S. H., Lewandowska, D., Simpson, C. G., Jones, I. M., Brown, J. W. S. & Shaw, P. J. 2009 In : Plant Cell. 21, 5, p. 1592-1606, 15 p.

    Research output: Contribution to journal › Article

  186. Functional redundancy in the Arabidopsis Cathepsin B gene family contributes to basal defence, the hypersensitive response and senescence

    McLellan, H., Gilroy, E. M., Yun, B-W., Birch, P. R. J. & Loake, G. J. 2009 In : New Phytologist. 183, 2, p. 408-418, 11 p.

    Research output: Contribution to journal › Article

  187. Mechanical reinforcement of soil by willow roots: impacts of root properties and root failure mechanism

    Mickovski, S. B., Hallett, P. D., Bransby, M. F., Davies, M. C. R., Sonnenberg, R. & Bengough, A. G. 2009 In : Soil Science Society of America Journal. 73, 4, p. 1276-1285, 10 p.

    Research output: Contribution to journal › Article

  188. Progress in mapping and cloning qualitative and quantitative resistance against Phytophthora infestans in potato and its wild relatives

    Hein, I., Birch, P. R. J., Danan, S., Lefebvre, V., Odeny, D. A., Gebhardt, C., Trognitz, F. & Bryan, G. J. 2009 In : Potato Research. 52, 3, p. 215-227

    Research output: Contribution to journal › Article

  189. Protein S-acylation in plants (Review)

    Hemsley, P. A. 2009 In : Molecular Membrane Biology. 26, 1-2, p. 114-125, 12 p.

    Research output: Contribution to journal › Scientific review

  190. Root phenomics of crops: opportunities and challenges

    Gregory, P. J., Bengough, A. G., Grinev, D., Schmidt, S., Thomas, W. . B. T. B., Wojciechowski, T. & Young, I. M. 2009 In : Functional Plant Biology. 36, 11, p. 922-929, 8 p.

    Research output: Contribution to journal › Article

  191. Plasmodium falciparum and Hyaloperonospora parasitica effector translocation motifs are functional in Phytophthora infestans

    Grouffaud, S., van West, P., Avrova, A. O., Birch, P. R. J. & Whisson, S. C. Dec-2008 In : Microbiology-SGM. 154, p. 3743-3751, 9 p.

    Research output: Contribution to journal › Article

  192. A novel Phytophthora infestans haustorium-specific membrane protein is required for infection of potato

    Avrova, A. O., Boevink, P. C., Young, V., Grenville-Briggs, L. J., van West, P., Birch, P. R. J. & Whisson, S. C. Nov-2008 In : Cellular Microbiology. 10, 11, p. 2271-2284, 14 p.

    Research output: Contribution to journal › Article

  193. The Phytophthora infestans avirulence gene Avr4 encodes an RXLR-dEER effector

    van Poppel, P. M. J. A., Guo, J., van de Vondervoort, P. J. I., Jung, M. W. M., Birch, P. R. J., Whisson, S. C. & Govers, F. Nov-2008 In : Molecular Plant - Microbe Interactions. 21, 11, p. 1460-1470

    Research output: Contribution to journal › Article

  194. Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome

    Lyons, M., Cardle, L., Rostoks, N., Waugh, R. & Flavell, A. J. Oct-2008 In : Molecular Genetics and Genomics. 280, 4, p. 275-285, 11 p.

    Research output: Contribution to journal › Article

  195. Genetic diversity and population structure of pea (Pisum sativum L.) varieties derived from combined retrotransposon, microsatellite and morphological marker analysis

    Smykal, P., Hybl, M., Corander, J., Jarkovsky, J., Flavell, A. J. & Griga, M. Aug-2008 In : Theoretical and Applied Genetics. 117, 3, p. 413-424, 12 p.

    Research output: Contribution to journal › Article

  196. Oomycete RXLR effectors: delivery, functional redundancy and durable disease resistance

    Birch, P. R. J., Boevink, P. C., Gilroy, E. M., Hein, I., Pritchard, L. & Whisson, S. C. Aug-2008 In : Current Opinion in Plant Biology. 11, 4, p. 373-379, 7 p.

    Research output: Contribution to journal › Scientific review

  197. The potential use of temperate chimeric phages in arthropod vectored disease control

    Butcher, R., Karr, T. L., Hubbard, S. F. & Areekul-Butcher, B. Jul-2008 In : Infection, Genetics and Evolution. 8, 4, p. S30-S31, 2 p., 62

    Research output: Contribution to journal › Book/Film/Article review

  198. Tissue culture propagation alters plant-microbe interactions in tobacco rhizosphere

    Tilston, E. L., Halpin, C. & Hopkins, D. W. Jul-2008 In : Biology and Fertility of Soils. 44, 6, p. 897-901, 5 p.

    Research output: Contribution to journal › Article

  199. Translocated oomycete effectors that target the plant immune system

    Birch, P. R. J., Whisson, S., Boevink, P., Armstrong, M., Pritchard, E. G., Grouffaud, S., Sandanandom, A., Taylor, R., Kamoun, S. & Bos, J. Jul-2008 In : Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. 150, 3, p. S176-S177, 2 p.

    Research output: Contribution to journal › Book/Film/Article review

  200. Multiple roles for protein palmitoylation in plants

    Hemsley, P. A. & Grierson, C. S. Jun-2008 In : Trends in Plant Science. 13, 6, p. 295-302, 8 p.

    Research output: Contribution to journal › Scientific review

  201. Quorum sensing coordinates brute force and stealth modes of infection in the plant pathogen Pectobacterium atrosepticum

    Liu, H., Coulthurst, S. J., Pritchard, L., Hedley, P. E., Ravensdale, M., Humphris, S., Burr, T., Takle, G., Brurberg, M-B., Birch, P. R. J., Salmond, G. P. C. & Toth, I. K. Jun-2008 In : PLoS Pathogens. 4, 6, p. -, 11 p., e1000093

    Research output: Contribution to journal › Article

  202. Deletion of the TbALG3 gene demonstrates site-specific N-glycosylation and N-glycan processing in Trypanosoma brucei

    Manthri, S., Guther, M. L. S., Izquierdo, L., Acosta-Serrano, A. & Ferguson, M. A. J. May-2008 In : Glycobiology. 18, 5, p. 367-383, 17 p.

    Research output: Contribution to journal › Article

  203. The BLADE-ON-PETIOLE genes are essential for abscission zone formation in Arabidopsis

    McKim, S. M., Stenvik, G-E., Butenko, M. A., Kristiansen, W., Cho, S. K., Hepworth, S. R., Aalen, R. B. & Haughn, G. W. 15-Apr-2008 In : Development. 135, 8, p. 1537-1546

    Research output: Contribution to journal › Article

  204. Cellulose synthesis in Phytophthora infestans is required for normal appressorium formation and successful infection of potato

    Grenville-Briggs, L. J., Anderson, V. L., Fugelstad, J., Avrova, A. O., Bouzenzana, J., Williams, A., Wawra, S., Whisson, S. C., Birch, P. R. J., Bulone, V. & van West, P. Mar-2008 In : Plant Cell. 20, 3, p. 720-738, 19 p.

    Research output: Contribution to journal › Article

  205. Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts

    Simpson, C. G., Fuller, J., Maronova, M., Kalyna, M., Davidson, D., McNicol, J., Barta, A. & Brown, J. W. S. Mar-2008 In : Plant Journal. 53, 6, p. 1035-1048, 14 p.

    Research output: Contribution to journal › Article

  206. A plant virus movement protein forms ringlike complexes with the major nucleolar protein, fibrillarin, in vitro

    Canetta, E., Kim, S. H., Kalinina, N. O., Shaw, J., Adya, A. K., Gillespie, T., Brown, J. W. S. & Taliansky, M. 29-Feb-2008 In : Journal of Molecular Biology. 376, 4, p. 932-937, 6 p.

    Research output: Contribution to journal › Article

  207. Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough

    Deeks, L. K., Bengough, A. G., Stutter, M. I., Young, I. M. & Zhang, X. X. 15-Jan-2008 In : Journal of Hydrology. 348, 3-4, p. 431-441, 11 p.

    Research output: Contribution to journal › Article

  208. Alternative splicing in plants

    Simpson, C. G., Lewandowska, D., Fuller, J., Maronova, M., Kalyna, M., Davidson, D., McNicol, J., Raczynska, D., Jarmolowski, A., Barta, A. & Brown, J. W. S. 2008 In : Biochemical Society Transactions. 36, 3, p. 508-10, 3 p.

    Research output: Contribution to journal › Article

  209. Assaying protein palmitoylation in plants

    Hemsley, P. A., Taylor, L. & Grierson, C. S. 2008 4, 2

    Research output: Contribution to journal › Article

  210. Black tea polyphenols mimic insulin/insulin-like growth factor-1 signalling to the longevity factor FOXO1a

    Cameron, A. R., Anton, S., Melville, L., Houston, N. P., Dayal, S., McDougall, G. J., Stewart, D. & Rena, G. 2008 In : Aging Cell. 7, 1, p. 69-77, 9 p.

    Research output: Contribution to journal › Article

  211. Identification of small compounds that mimic insulin action on the transcription factor FOXO1a

    Cameron, A., Anton, S., Reetoo, N., Melville, L., Houston, N., Dayal, S., McDougall, G., Stewart, D. & Rena, G. 2008 In : Diabetes. 57, Suppl., p. A699-A700, 2 p.

    Research output: Contribution to journal › Meeting abstract

  212. Intronic noncoding RNAs and splicing

    Brown, J. W. S., Marshall, D. F. & Echeverria, M. 2008 In : Trends in Plant Science. 13, 7, p. 335-342, 8 p.

    Research output: Contribution to journal › Article

  213. Performance evaluation of the cell-based algorithms for domain decomposition in flow simulation

    Wang, J., Zhang, X., Bengough, A. G. & Crawford, J. W. 2008 In : International Journal of Numerical Methods for Heat & Fluid Flow. 18, 5-6, p. 656-672, 17 p.

    Research output: Contribution to journal › Article

  214. Regulation of Flowering Time by RNA Processing

    Terzi, L. C. & Simpson, G. G. 2008 Nuclear Pre-Mrna Processing in Plants. Reddy, A. S. N. & Golovkin, M. (eds.). Berlin: Springer, Vol. 326, p. 201-218 18 p.

    Research output: Chapter in Book/Report/Conference proceeding › Other chapter contribution

  215. The role of the plant nucleolus in pre-mRNA processing

    Brown, J. W. S. & Shaw, P. J. 2008 Nuclear pre-mRNA processing in plants. Reddy, A. S. N. & Golovkin, M. (eds.). Berlin: Springer, p. 291-311 21 p. (Current topics in microbiology and immunology).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  216. U12-dependent intron splicing in plants

    Simpson, C. G. & Brown, J. W. S. 2008 Nuclear pre-mRNA processing in plants. Reddy, A. S. N. & Golovkin, M. (eds.). Berlin: Springer, p. 61-82 22 p. (Current topics in microbiology and immunology).

    Research output: Chapter in Book/Report/Conference proceeding › Other chapter contribution

  217. What will a genome sequence do for fire blight research?: Pectobacterium atrosepticum and potato - a case study

    Toth, I. K., Birch, P. R. J., Liu, H., Pritchard, L., Humphris, S., Ravensdale, M., Moleleki, L., Robert, C., Hedley, P. & Gilroy, E. M. 2008 In : Acta Horticulturae. 793, p. 157-162, 6 p.

    Research output: Contribution to journal › Article

  218. A unified classification system for eukaryotic transposable elements

    Wicker, T., Sabot, F., Hua-Van, A., Bennetzen, J. L., Capy, P., Chalhoub, B., Flavell, A., Leroy, P., Morgante, M., Panaud, O., Paux, E., SanMiguel, P. & Schulman, A. H. Dec-2007 In : Nature Reviews Genetics. 8, 12, p. 973-982, 10 p.

    Research output: Contribution to journal › Scientific review

  219. Gene-based sequence diversity analysis of field pea (Pisum)

    Jing, R., Johnson, R., Seres, A., Kiss, G., Ambrose, M. J., Knox, M. R., Ellis, T. H. N. & Flavell, A. J. Dec-2007 In : Genetics. 177, 4, p. 2263-2275, 13 p.

    Research output: Contribution to journal › Article

  220. Material stiffness, branching pattern and soil matric potential affect the pullout resistance of model root systems

    Mickovski, S. B., Bengough, A. G., Bransby, M. F., Davies, M. C. R., Hallett, P. D. & Sonnenberg, R. Dec-2007 In : European Journal of Soil Science. 58, 6, p. 1471-1481, 11 p.

    Research output: Contribution to journal › Article

  221. A translocation signal for delivery of oomycete effector proteins inside host plant cells

    Whisson, S. C., Boevink, P. C., Moleleki, L., Avrova, A. O., Morales, J. G., Gilroy, E. M., Armstrong, M. R., Grouffaud, S., West, P. V., Chapman, S., Hein, I., Toth, I. K., Pritchard, L. & Birch, P. R. J. Nov-2007 In : Nature. 450, 7166, p. 115-118, 4 p.

    Research output: Contribution to journal › Article

  222. Involvement of cathepsin B in the plant disease resistance hypersensitive response

    Gilroy, E. M., Hein, I., Van Der Hoorn, R., Boevink, P. C., Venter, E., McLellan, H., Kaffarnik, F., Hrubikova, K., Shaw, J., Holeva, M., Lopez, E. C., Borras-Hidalgo, O., Pritchard, L., Loake, G. J., Lacomme, C. & Birch, P. R. J. Oct-2007 In : Plant Journal. 52, 1, p. 1-13, 13 p.

    Research output: Contribution to journal › Article

  223. Break on through to the other side: outer membrane penetration of the nascent flagellum by a stop-polymerization mechanism

    Huitema, E. & Viollier, P. H. 15-Sep-2007 In : Genes & Development. 21, 18, p. 2253-2257, 5 p.

    Research output: Contribution to journal › Article

  224. Ecological impacts of trees with modified lignin

    Halpin, C., Thain, S. C., Tilston, E. L., Guiney, E., Lapierre, C. & Hopkins, D. W. 1-Apr-2007 In : Tree Genetics and Genomes. 3, 2, p. 101-110, 10 p.

    Research output: Contribution to journal › Article

  225. Cajal bodies and the nucleolus are required for a plant virus systemic infection

    Kim, S. H., Ryabov, E. V., Kalinina, N. O., Rakitina, D. V., Gillespie, T., MacFarlane, S., Haupt, S., Brown, J. W. S. & Taliansky, M. Apr-2007 In : The EMBO Journal. 26, 8, p. 2169-2179, 11 p.

    Research output: Contribution to journal › Article

  226. Chemotaxis-induced spatio-temporal heterogeneity in multi-species host-parasitoid systems

    Pearce, I. G., Chaplain, M. A. J., Schofield, P. G., Anderson, A. R. A. & Hubbard, S. F. 2007 In : Journal of Mathematical Biology. 55, 3, p. 365-388, 24 p.

    Research output: Contribution to journal › Article

  227. Disease induced dynamics in host-parasitoid systems: chaos and coexistence

    Preedy, K. F., Schofield, P. G., Chaplain, M. A. J. & Hubbard, S. F. 2007 In : Journal of the Royal Society Interface. 4, 14, p. 463-471, 9 p.

    Research output: Contribution to journal › Article

  228. Interaction of a plant virus-encoded protein with the major nucleolar protein fibrillarin is required for systemic virus infection

    Kim, S. H., Macfarlane, S., Kalinina, N. O., Rakitina, D. V., Ryabov, E. V., Gillespie, T., Haupt, S., Brown, J. W. S. & Taliansky, M. 2007 In : Proceedings of the National Academy of Sciences of the United States of America. 104, 26, p. 11115-20, 6 p.

    Research output: Contribution to journal › Article

  229. Mechanics of root-pullout from soil: a novel image and stress analysis procedure

    Hamza, O., Bengough, A. G., Bransby, M. F., Davies, M. C. R. & Hallett, P. D. 2007 Eco- and ground bio-engineering : the use of vegetation to improve slope stability: proceedings of the First International Conference on Eco-Engineering, 13-17 September 2004. Stokes, A., Spanos, I., Norris, J. E. & Cammeraat, E. (eds.). Dordrecht: Springer, p. 213-221 9 p. (Developments in Plant and Soil Sciences).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  230. The tagged microarray marker (TAM) method for high-throughput detection of single nucleotide and indel polymorphisms

    Jing, R., Bolshakov, V. & Flavell, A. J. 2007 In : Nature Protocols. 2, 1, p. 168-177, 10 p.

    Research output: Contribution to journal › Article

  231. Impact of fungal and bacterial biocides on microbial induced water repellency in arable soil

    Feeney, D. S., Hallett, P. D., Rodger, S., Bengough, A. G., White, N. A. & Young, I. M. Nov-2006 In : Geoderma. 135, p. 72-80, 9 p.

    Research output: Contribution to journal › Article

  232. The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana

    Bos, J. I. B., Kanneganti, T-D., Young, C., Cakir, C., Huitema, E., Win, J., Armstrong, M. R., Birch, P. R. J. & Kamoun, S. Oct-2006 In : Plant Journal. 48, 2, p. 165-176, 12 p.

    Research output: Contribution to journal › Article

  233. Synergistic interactions of the plant cell death pathways induced by Phytophthora infestans Nep1-like protein PiNPP1.1 and INF1 elicitin

    Kanneganti, T-D., Huitema, E., Cakir, C. & Kamoun, S. Aug-2006 In : Molecular Plant - Microbe Interactions. 19, 8, p. 854-863, 10 p.

    Research output: Contribution to journal › Article

  234. A rnyxobacterial S-motility protein dances with poles

    Huitema, E. & Viollier, P. H. Jun-2006 In : Trends in Microbiology. 14, 6, p. 247-248, 2 p.

    Research output: Contribution to journal › Scientific review

  235. Biomechanics of plant roots: estimating localised deformation with particle image velocimetry

    Hamza, O., Bengough, A. G., Bransby, M. F., Davies, M. C. R. & Hallett, P. D. May-2006 In : Biosystems Engineering. 94, 1, p. 119-132, 14 p.

    Research output: Contribution to journal › Article

  236. Wolbachia infection suppresses both host defence and parasitoid counter-defence

    Fytrou, A., Schofield, P. G., Kraaijeveld, A. R. & Hubbard, S. F. Apr-2006 In : Proceedings of the Royal Society B. 273, 1588, p. 791-796, 6 p.

    Research output: Contribution to journal › Article

  237. Bacterial birth scar proteins mark future flagellum assembly site

    Huitema, E., Pritchard, S., Matteson, D., Radhakrishnan, S. K. & Viollier, P. H. 10-Mar-2006 In : Cell. 124, 5, p. 1025-1037, 13 p.

    Research output: Contribution to journal › Article

  238. Theoretical steps towards modelling resilience in complex systems

    Hawes, C. & Reed, C. 1-Jan-2006 Computational Science and Its Applications - ICCSA 2006: International Conference, Glasgow, UK, May 8-11, 2006. Proceedings, Part I. Gavrilova, M., Gervasi, O., Kumar, V., Kenneth Tan, C. J., Taniar, D., Laganà, A., Mun, Y. & Choo, H. (eds.). Berlin and New York: Springer, Vol. 3980 LNCS, p. 644-653 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter

  239. Assessing the impact of biological exudates associated with soil water repellency

    Feeney, D. S., Bengough, A. G., Hallett, P. D., Rodger, S., White, N. & Young, I. M. 2006 Soil management for sustainability. Horn, R., Fleige, H., Peth, S. & Peng, X. H. (eds.). Reiskirchen: CATENA VERLAG, p. 475-483 9 p. (Advances in geoecology).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  240. Modelling the spatio-temporal dynamics of multi-species host-parasitoid interactions: heterogeneous patterns and ecological implications

    Pearce, I. G., Chaplain, M. A. J., Schofield, P. G., Anderson, A. R. A. & Hubbard, S. F. 2006 In : Journal of Theoretical Biology. 241, 4, p. 876-886, 11 p.

    Research output: Contribution to journal › Article

  241. GERMINATE. a generic database for integrating genotypic and phenotypic information for plant genetic resource collections

    Lee, J. M., Davenport, G. F., Marshall, D., Ellis, T. H. N., Ambrose, M. J., Dicks, J., van Hintum, T. J. L. & Flavell, A. J. Oct-2005 In : Plant Physiology. 139, 2, p. 619-631, 13 p.

    Research output: Contribution to journal › Article

  242. Insertional polymorphism and antiquity of PDR1 retrotransposon insertions in Pisum species

    Jing, R., Knox, M. R., Lee, J. M., Vershinin, A. V., Ambrose, M., Ellis, T. H. N. & Flavell, A. J. Oct-2005 In : Genetics. 171, 2, p. 741-752, 12 p.

    Research output: Contribution to journal › Article

  243. Root cap influences root colonisation by Pseudomonas fluorescens SBW25 on maize

    Humphris, S. N., Bengough, A. G., Griffiths, B. S., Kilham, K., Rodger, S., Stubbs, V., Valentine, T. A. & Young, I. M. Sep-2005 In : FEMS Microbiology Ecology. 54, 1, p. 123-130, 8 p.

    Research output: Contribution to journal › Article

  244. The TIP GROWTH DEFECTIVE1 S-acyl transferase regulates plant cell growth in Arabidopsis

    Hemsley, P. A., Kemp, A. C. & Grierson, C. S. Sep-2005 In : Plant Cell. 17, 9, p. 2554-2563, 10 p.

    Research output: Contribution to journal › Article

  245. A mass balance based numerical method for the fractional advection-dispersion equation: theory and application

    Zhang, X., Crawford, J. W., Deeks, L. K., Stutter, M. I., Bengough, A. G. & Young, I. M. 27-Jul-2005 In : Water Resources Research. 41, 7, p. -, 11 p., W07029

    Research output: Contribution to journal › Article

  246. Determination of soil hydraulic conductivity with the lattice Boltzmann method and soil thin-section technique

    Zhang, X., Deeks, L. K., Bengough, A. G., Crawford, J. W. & Young, I. M. 9-May-2005 In : Journal of Hydrology. 306, 1-4, p. 59-70, 12 p.

    Research output: Contribution to journal › Article

  247. An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognized in the host cytoplasm

    Armstrong, M. R. , Whisson, S. C. , Pritchard, L. , Bos, J. I. B. , Venter, E. , Avrova, A. O. , Rehmany, A. P. , Bohme, U. , Brooks, K. , Cherevach, I. , Hamlin, N. , White, B. , Fraser, A. , Lord, A. , Quail, M. A. , Churcher, C. , Hall, N. , Berriman, M. , Huang, S. , Kamoun, S. & 3 others Beynon, J. L., Birch, P. R. J. & Cook, R. J. (ed.) May-2005 In : Proceedings of the National Academy of Sciences of the United States of America. 102, 21, p. 7766-7771, 6 p.

    Research output: Contribution to journal › Article

  248. Differences in intensity and specificity of hypersensitive response induction in Nicotiana spp. by INN, INF2A, and INF2B of Phytophthora infestans

    Huitema, E., Vleeshouwers, V. G. A. A., Cakir, C., Kamoun, S. & Govers, F. Mar-2005 In : Molecular Plant - Microbe Interactions. 18, 3, p. 183-193, 11 p.

    Research output: Contribution to journal › Article

  249. Large-scale gene discovery in the oomycete Phytophthora infestans reveals likely components of phytopathogenicity shared with true fungi

    Huitema, E. & 30 others Randall, T. A., Dwyer, R. A., Beyer, K., Cvitanich, C., Kelkar, H., Ah Fong, A. M. V., Gates, K., Roberts, S., Yatzkan, E., Gaffney, T., Law, M., Testa, A., Torto-Alalibo, T., Zhang, M., Zheng, L., Mueller, E., Windass, J., Binder, A., Birch, P. R. J., Gisi, U., Govers, F., Gow, N. A., Mauch, F., van West, P., Waugh, M. E., Yu, J., Boller, T., Kamoun, S., Lam, S. T. & Judelson, H. S. Mar-2005 In : Molecular Plant - Microbe Interactions. 18, 3, p. 229-243, 15 p.

    Research output: Contribution to journal › Article

  250. An allelic series reveals essential roles for FY in plant development in addition to flowering-time control

    Henderson, I. R., Liu, F., Drea, S., Simpson, G. G. & Dean, C. Jan-2005 In : Development. 132, 16, p. 3597-3607, 11 p.

    Research output: Contribution to journal › Article

  251. Arabidopsis nucleolar protein database (AtNoPDB)

    Brown, J. W. S., Shaw, P. J., Shaw, P. & Marshall, D. F. 2005 In : Nucleic Acids Research. 33, S1, p. D633-D636, 4 p.

    Research output: Contribution to journal › Article

  252. Dynamic heterogeneous spatio-temporal pattern formation in host-parasitoid systems with synchronised generations

    Schofield, P. G., Chaplain, M. A. J. & Hubbard, S. F. 2005 In : Journal of Mathematical Biology. 50, 5, p. 559-583, 25 p.

    Research output: Contribution to journal › Article

  253. Evolution of searching and life history characteristics in individual-based models of host-parasitoid-microbe associations

    Schofield, P., Chaplain, M. & Hubbard, S. 2005 In : Journal of Theoretical Biology. 237, 1, p. 1-16, 16 p.

    Research output: Contribution to journal › Article

  254. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions

    Pendle, A. F., Clark, G. P., Boon, R., Lewandowska, D., Lam, Y. W., Andersen, J., Mann, M., Lamond, A. I., Brown, J. W. S. & Shaw, P. J. 2005 In : Molecular Biology of the Cell. 16, 1, p. 260-269, 10 p.

    Research output: Contribution to journal › Article

  255. Plant nuclear bodies

    Shaw, P. J. & Brown, J. W. S. Dec-2004 In : Current Opinion in Plant Biology. 7, 6, p. 614-620, 7 p.

    Research output: Contribution to journal › Article

  256. Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors

    Bell, K. S. , Sebaihia, M. , Pritchard, L. , Holden, M. T. G. , Hyman, L. J. , Holeva, M. C. , Thomson, N. R. , Bentley, S. D. , Churcher, L. J. C. , Mungall, K. , Atkin, R. , Bason, N. , Brooks, K. , Chillingworth, T. , Clark, K. , Doggett, J. , Fraser, A. , Hance, Z. , Hauser, H. , Jagels, K. & 13 others Moule, S., Norbertczak, H., Ormond, D., Price, C., Quail, M. A., Sanders, M., Walker, D., Whitehead, S., Salmond, G. P. C., Birch, P. R. J., Parkhill, J., Toth, I. K. & Haselkorn, R. (ed.) Jul-2004 In : Proceedings of the National Academy of Sciences of the United States of America. 101, 30, p. 11105-11110, 6 p.

    Research output: Contribution to journal › Article

  257. The evolution of modern eukaryotic phytoplankton

    Raven, J., Falkowski, P. G., Katz, M. E., Quigg, A., Schofield, O., Taylor, F. J. R. & Knoll, A. H. Jul-2004 In : Science. 305, 5682, p. 354-360, 7 p.

    Research output: Contribution to journal › Article

  258. A Kazal-like extracellular serine protease inhibitor from Phytophthora infestans targets the tomato pathogenesis-related protease P69B

    Tian, M., Huitema, E., da Cunha, L., Torto-Alalibo, T. & Kamoun, S. 18-Jun-2004 In : Journal of Biological Chemistry. 279, 25, p. 26370-26377, 8 p.

    Research output: Contribution to journal › Article

  259. Combining thermal and visible imagery for estimating canopy temperature and identifying plant stress

    Leinonen, I. & Jones, H. Jun-2004 In : Journal of Experimental Botany. 55, 401, p. 1423-1431, 9 p.

    Research output: Contribution to journal › Article

  260. Dissection of nonhost resistance of Arabidopsis to Phytophthora infestans

    Huitema, E., Dong, S., Hamada, W. & Kamoun, S. Jun-2004 In : Phytopathology. 94, 6, p. S159-S159, 1 p.

    Research output: Contribution to journal › Meeting abstract

  261. Molecular interactions between a plant virus movement protein and RNA: force spectroscopy investigation

    Andreev, I. A., Kim, S. H., Kalinina, N. O., Rakitina, D. V., Fitzgerald, S., Palukaitis, P. & Taliansky, M. Jun-2004 In : Journal of Molecular Biology. 339, 5, p. 1041-1047, 7 p.

    Research output: Contribution to journal › Article

  262. Linking sequence to phenotype in Phytophthora-plant interactions

    Huitema, E., Bos, J. I. B., Tian, M., Win, J., Waugh, M. E. & Kamoun, S. Apr-2004 In : Trends in Microbiology. 12, 4, p. 193-200, 8 p.

    Research output: Contribution to journal › Scientific review

  263. Root border cells take up and release glucose-C

    Stubbs, V. E. C., Standing, D., Knox, O. G. G., Killham, K., Bengough, A. G. & Griffiths, B. Feb-2004 In : Annals of Botany. 93, 2, p. 221-224, 4 p.

    Research output: Contribution to journal › Article

  264. Determinants of plant U12-dependent intron splicing efficiency

    Lewandowska, D., Simpson, C. G., Clark, G. P., Jennings, N. S., Barciszewska-Pacak, M., Lin, C-F., Makalowski, W., Brown, J. W. S. & Jarmolowski, A. 2004 In : Plant Cell. 16, 5, p. 1340-1352, 13 p.

    Research output: Contribution to journal › Article

  265. Dual functionality of a plant U-rich intronic sequence element

    Simpson, C. G., Jennings, N., Clark, G. P., Thow, G. & Brown, J. W. S. 2004 In : Plant Journal. 37, 1, p. 82-91, 10 p.

    Research output: Contribution to journal › Article

  266. Involvement of the nucleolus in plant virus systemic infection

    Kim, S. H., Ryabov, E. V., Brown, J. W. S. & Taliansky, M. 2004 In : Biochemical Society Transactions. 32, p. 557-60, 4 p.

    Research output: Contribution to journal › Article

  267. Active defence responses associated with non-host resistance of Arabidopsis thaliana to the oomycete pathogen Phytophthora infestans

    Huitema, E., Vleeshouwers, V. G. A. A., Francis, D. M. & Kamoun, S. Nov-2003 In : Molecular Plant Pathology. 4, 6, p. 487-500, 14 p.

    Research output: Contribution to journal › Article

  268. A microarray-based high throughput molecular marker genotyping method: the tagged microarray marker (TAM) approach

    Flavell, A. J., Bolshakov, V. N., Booth, A., Jing, R., Russell, J., Ellis, T. H. N. & Isaac, P. Oct-2003 In : Nucleic Acids Research. 31, 19, p. e115

    Research output: Contribution to journal › Article

  269. Does the presence of detached root border cells of Zea mays alter the activity of the pathogenic nematode Meloidogyne incognita?

    Rodger, S., Bengough, A. G., Griffiths, B. S., Stubbs, V. & Young, I. M. Sep-2003 In : Phytopathology. 93, 9, p. 1111-1114, 4 p.

    Research output: Contribution to journal › Article

  270. EST mining and functional expression assays identify extracellular effector proteins from the plant pathogen Phytophthora

    Torto, T. A., Li, S., Styer, A., Huitema, E., Testa, A., Gow, N. A. R., van West, P. & Kamoun, S. Jul-2003 In : Genome Research. 13, 7, p. 1675-1685, 11 p.

    Research output: Contribution to journal › Article

  271. Plant influence on rhizosphere hydraulic properties: direct measurements using a miniaturized infiltrometer

    Hallett, P. D., Gordon, D. C. & Bengough, A. G. Mar-2003 In : New Phytologist. 157, 3, p. 597-603, 7 p.

    Research output: Contribution to journal › Article

  272. Variation in structure and activity among elicitins from Phytophthora sojae

    Qutob, D., Huitema, E., Gijzen, M. & Kamoun, S. Mar-2003 In : Molecular Plant Pathology. 4, 2, p. 119-124, 6 p.

    Research output: Contribution to journal › Article

  273. Low temperature enhances photosynthetic down-regulation in French bean (Phaseolus vulgaris L.) plants

    Tsonev, T., Velikova, V., Georgieva, K., Hyde, P. F. & Jones, H. Feb-2003 In : Annals of Botany. 91, 3, p. 343-352, 10 p.

    Research output: Contribution to journal › Article

  274. Plant roots release phospholipid surfactants that modify the physical and chemical properties of soil

    Read, D. B., Bengough, A. G., Gregory, P. J., Crawford, J. W., Robinson, D., Scrimgeour, C. M., Young, I. M., Zhang, K. & Zhang, X. Feb-2003 In : New Phytologist. 157, 2, p. 315-326, 12 p.

    Research output: Contribution to journal › Article

  275. Agrosuppression: a bioassay for the hypersensitive response suited to high-throughput screening

    Kamoun, S., Hamada, W. & Huitema, E. Jan-2003 In : Molecular Plant - Microbe Interactions. 16, 1, p. 7-13, 7 p.

    Research output: Contribution to journal › Article

  276. Autoregulation of FCA pre-mRNA processing controls Arabidopsis flowering time

    Quesada, V., Macknight, R., Dean, C. & Simpson, G. G. Jan-2003 In : The EMBO Journal. 22, 12, p. 3142-3152, 11 p.

    Research output: Contribution to journal › Article

  277. FY is an RNA 3 ' end-processing factor that interacts with FCA to control the Arabidopsis floral transition

    Simpson, G. G., Dijkwel, P. P., Quesada, V., Henderson, I. R. & Dean, C. 2003 In : Cell. 113, 6, p. 777-787, 11 p.

    Research output: Contribution to journal › Article

  278. Soil factors determined nematode community composition in a two year pot experiment

    Griffiths, B. S., Neilson, R. & Bengough, A. G. 2003 In : Nematology. 5, 6, p. 889-897, 9 p.

    Research output: Contribution to journal › Article

  279. Proper meals in transition: young married couples on the nature of eating together

    Marshall, D. W. & Anderson, A. S. Dec-2002 In : Appetite. 39, 3, p. 193-206, 14 p.

    Research output: Contribution to journal › Article

  280. Use of infrared thermography for monitoring stomatal closure in the field: application to grapevine

    Jones, H., Stoll, M., Santos, T., Sousa, C. D., Chaves, M. M. & Grant, O. M. Nov-2002 In : Journal of Experimental Botany. 53, 378, p. 2249-2260, 12 p.

    Research output: Contribution to journal › Article

  281. Functional significance of the alternative transcript processing of the Arabidopsis floral promoter FCA

    Macknight, R., Duroux, M., Laurie, R., Dijkwel, P. P., Simpson, G. & Dean, C. Apr-2002 In : Plant Cell. 14, 4, p. 877-888, 12 p.

    Research output: Contribution to journal › Article

  282. From sequence to phenotype: functional genomics of Phytophthora

    Kamoun, S., Dong, S., Hamada, W., Huitema, E., Kinney, D., Morgan, W. R., Styer, A., Testa, A. & Torto, T. A. Mar-2002 In : Canadian Journal of Plant Pathology-Revue Canadienne de Phytopathologie. 24, 1, p. 6-9, 4 p.

    Research output: Contribution to journal › Article

  283. Mathematical modelling of host-parasitoid systems: effects of chemically mediated parasitoid foraging strategies on within- and between-generation spatio-temporal dynamics

    Schofield, P., Chaplain, M. & Hubbard, S. 2002 In : Journal of Theoretical Biology. 214, 1, p. 31-47, 17 p.

    Research output: Contribution to journal › Article

  284. The extent to which nematode communities are affected by soil factors: a pot experiment

    Griffiths, B. S., Bengough, A. G., Neilson, R. & Trudgill, D. L. 2002 In : Nematology. 4, 8, p. 943-952, 10 p.

    Research output: Contribution to journal › Article

  285. An off-line implementation of the stable isotope technique for measurements of alternative respiratory pathway activities

    Nagel, O. W., Waldron, S. & Jones, H. Nov-2001 In : Plant Physiology. 127, 3, p. 1279-1286, 8 p.

    Research output: Contribution to journal › Article

  286. The evolution of Ty1-copia group retrotransposons in gymnosperms

    Stuart-Rogers, C. & Flavell, A. J. Feb-2001 In : Molecular Biology and Evolution. 18, 2, p. 155-163, 9 p.

    Research output: Contribution to journal › Article

  287. Phosphorus limitation of nitrogen fixation by Trichodesmium in the central Atlantic Ocean

    Raven, J., Capone, D. G., Carpenter, E. J., Hutchins, D. A., Sanudo-Wilhelmy, S. A., Kustka, A. B., Gobler, C. J., Yang, M., Lwiza, K. & Burn, J. 2001 In : Nature. 411, 6833, p. 66-69, 4 p.

    Research output: Contribution to journal › Article

  288. Cloning, expression and functional characterisation of a peroxiredoxin from the potato cyst nematode Globedera rostochiensis

    Robertson, L., Robertson, W. M., Sobczak, M., Helder, J., Tetaud, E., Ariyanayagam, M. R., Ferguson, M. A. J., Fairlamb, A. & Jones, J. T. Nov-2000 In : Molecular and Biochemical Parasitology. 111, 1, p. 41-49, 9 p.

    Research output: Contribution to journal › Article

  289. Dissection of nonhost resistance of Nicotiana to Phytophthora infestans

    Kamoun, S., Dong, S. J., Huitema, E., Torto, G. A., van West, P., Vleeshouwers, V. G. A. A. & Govers, F. 2000 Biology of plant-microbe interactions. de Wit, P. J. G. M., Bisseling, T. & Stiekema, W. J. (eds.). St. Paul: International Society for Molecular Plant-Microbe Interactions, Vol. 2, p. 180-185 6 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

  290. Resistance to oomycetes: a general role for the hypersensitive response?

    Kamoun, S., Huitema, E. & Vleeshouwers, V. G. A. A. May-1999 In : Trends in Plant Science. 4, 5, p. 196-200, 5 p.

    Research output: Contribution to journal › Scientific review

  291. Characterization of the S-adenosylmethionine decarboxylase (SAMDC) gene of potato

    Arif, S. A. M., Taylor, M. A., George, L. A., Butler, A. R., Burch, L. R., Davies, H. V., Stark, M. J. R. & Kumar, A. Oct-1994 In : Plant Molecular Biology. 26, 1, p. 327-338, 12 p.

    Research output: Contribution to journal › Article

Find Research Units in Discovery

Reset

Browse units by College

Library & Learning Centre

Contact | Accessibility | Policy