Discovery - University of Dundee - Online Publications

Library & Learning Centre

Plant Sciences

1 - 438 out of 438Page size: 500
Sort by: Publication year
  1. Arabidopsis PTB1 and PTB2 proteins negatively regulate splicing of a mini-exon splicing reporter and affect alternative splicing of endogenous genes differentially

    Simpson, C. G., Lewandowska, D., Liney, M., Davidson, D., Chapman, S., Fuller, J., McNicol, J., Shaw, P. & Brown, J. W. S. Jul 2014 In : New Phytologist. 203, 2, p. 424-436 13 p.

    Research output: Contribution to journalArticle

  2. QTL mapping in autotetraploids using SNP dosage information

    Hackett, C. A., Bradshaw, J. E. & Bryan, G. J. Jul 2014 In : Theoretical and Applied Genetics.

    Research output: Contribution to journalArticle

  3. Low levels of ribosomal RNA partly account for the very high photosynthetic phosphorus-use efficiency of Proteaceae species

    Sulpice, R., Ishihara, H., Schlereth, A., Cawthray, G. R., Encke, B., Giavalisco, P., Ivakov, A., Arrivault, S., Jost, R., Krohn, N., Kuo, J., Laliberté, E., Pearse, S. J., Raven, J. A., Scheible, W-R., Teste, F., Veneklaas, E. J., Stitt, M. & Lambers, H. Jun 2014 In : Plant, Cell & Environment. 37, 6, p. 1276-1298 23 p.

    Research output: Contribution to journalArticle

  4. Field phenotyping of potato to assess root and shoot characteristics associated with drought tolerance

    Wishart, J., George, T. S., Brown, L. K., White, P. J., Ramsay, G., Jones, H. & Gregory, P. J. May 2014 In : Plant and Soil. 378, 1-2, p. 351-363 13 p.

    Research output: Contribution to journalArticle

  5. Genome-Tagged Amplification (GTA): a PCR-based method to prepare sample-tagged amplicons from hundreds of individuals for next generation sequencing

    Ho, T., Cardle, L., Xu, X., Bayer, M., Prince, K. S. J., Mutava, R. N., Marshall, D. F. & Syed, N. 12 Apr 2014 In : Molecular Breeding.

    Research output: Contribution to journalArticle

  6. Phytophthora infestans RXLR effector PexRD2 interacts with host MAPKKKε to suppress plant immune signaling

    King, S. R. F., McLellan, H., Boevink, P. C., Armstrong, M. R., Bukharov, T., Sukarta, O., Win, J., Kamoun, S., Birch, P. R. J. & Banfield, M. J. Mar 2014 In : Plant Cell. 26, 3, p. 1345-1359 15 p.

    Research output: Contribution to journalArticle

  7. Geographical gradient of the eIF4E alleles conferring resistance to potyviruses in pea (Pisum) germplasm

    Konečná, E., Safářová, D., Navrátil, M., Hanáček, P., Coyne, C., Flavell, A., Vishnyakova, M., Ambrose, M., Redden, R. & Smýkal, P. Mar 2014 In : PLoS ONE. 9, 3, e90394

    Research output: Contribution to journalArticle

  8. Message ends: RNA 3' processing and flowering time control

    Rataj, K. & Simpson, G. G. Feb 2014 In : Journal of Experimental Botany. 65, 2, p. 353-363 11 p.

    Research output: Contribution to journalArticle

  9. Physiological, biochemical and molecular responses of the potato (Solanum tuberosum L.) plant to moderately elevated temperature

    Hancock, R. D., Morris, W. L., Ducreux, L. J. M., Morris, J. A., Usman, M., Verrall, S. R., Fuller, J., Simpson, C. G., Zhang, R., Hedley, P. E. & Taylor, M. A. Feb 2014 In : Plant, Cell & Environment. 37, 2, p. 439-450 12 p.

    Research output: Contribution to journalArticle

  10. The use of tobacco mosaic virus and cowpea mosaic virus for the production of novel metal nanomaterials

    Love, A. J., Makarov, V., Yaminsky, I., Kalinina, N. O. & Taliansky, M. E. 20 Jan 2014 In : Virology. 449, p. 133-139 7 p.

    Research output: Contribution to journalScientific review

  11. The Arabidopsis Mediator Complex Subunits MED16, MED14, and MED2 Regulate Mediator and RNA Polymerase II Recruitment to CBF-Responsive Cold-Regulated Genes

    Hemsley, P. A., Hurst, C. H., Kaliyadasa, E., Lamb, R., Knight, M. R., De Cothi, E. A., Steele, J. F. & Knight, H. 10 Jan 2014 In : Plant Cell.

    Research output: Contribution to journalArticle

  12. Mp10 and Mp42 from the aphid species Myzus persicae trigger plant defenses in Nicotiana benthamiana through different activities

    Rodriguez, P. A., Stam, R., Warbroek, T. & Bos, J. I. B. 1 Jan 2014 In : Molecular Plant - Microbe Interactions. 27, 1, p. 30-39 10 p.

    Research output: Contribution to journalArticle

  13. Barley has two peroxisomal ABC transporters with multiple functions in β-oxidation

    Mendiondo, G. M., Medhurst, A., van Roermund, C. W., Zhang, X., Devonshire, J., Scholefield, D., Fernández, J., Axcell, B., Ramsay, L., Waterham, H. R., Waugh, R., Theodoulou, F. L. & Holdsworth, M. J. 2014 In : Journal of Experimental Botany. 15 p.

    Research output: Contribution to journalArticle

  14. Coilin, the signature protein of Cajal bodies, differentially modulates the interactions of plants with viruses in widely different taxa

    Shaw, J., Love, A. J., Makarova, S. S., Kalinina, N. O., Harrison, B. D. & Taliansky, M. E. 2014 In : Nucleus. 5, 1, p. 579-588 10 p.

    Research output: Contribution to journalArticle

  15. Energy costs of carbon dioxide concentrating mechanisms in aquatic organisms

    Raven, J. A., Beardall, J. & Giordano, M. 2014 In : Photosynthesis Research.

    Research output: Contribution to journalArticle

  16. Enhanced biofuel production using optimality, pathway modification and waste minimization

    Raven, J. A. & Ralph, P. J. 2014

    Research output: Contribution to journalArticle

  17. Functionally Redundant RXLR Effectors from Phytophthora infestans Act at Different Steps to Suppress Early flg22-Triggered Immunity

    Zheng, X., McLellan, H., Fraiture, M., Liu, X., Boevink, P. C., Gilroy, E. M., Chen, Y., Kandel, K., Sessa, G., Birch, P. R. J. & Brunner, F. 2014 In : PLoS Pathogens. 10, 4

    Research output: Contribution to journalArticle

  18. Genotypic variation in the ability of landraces and commercial cereal varieties to avoid manganese deficiency in soils with limited manganese availability: is there a role for root-exuded phytases?

    George, T. S., French, A. S., Brown, L. K., Karley, A. J., White, P. J., Ramsay, L. & Daniell, T. J. 2014 In : Physiologia Plantarum. p. 1-25 25 p.

    Research output: Contribution to journalArticle

  19. Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-seq and ESTs

    Schurch, N. J., Cole, C., Sherstnev, A., Song, J., Duc, C., Storey, K. G., McLean, W. H. I., Brown, S. J., Simpson, G. G. & Barton, G. J. 2014 In : PLoS ONE. 9, 4, e94270

    Research output: Contribution to journalArticle

  20. In search of clean, affordable energy

    Bao, Z., Benson, S. M., Cui, Y., Dionne, J. A., Maher, K., Boerjan, W., Halpin, C., Nelson, R., Nichols, D., Ralph, J. & Ramakrishnan, T. S. 2014 26, 1, p. 4-15 12 p.

    Research output: Contribution to journalArticle

  21. In vivo protein-protein interaction studies with BiFC: conditions, cautions, and caveats

    Boevink, P., McLellan, H., Bukharova, T., Engelhardt, S. & Birch, P. 2014 Plant-pathogen interactions: methods and protocols. Birch, P., Jones, J. T. & Bos, J. I. B. (eds.). Humana Press, p. 81-90 10 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

  22. Leaf-disc assay based on transient over-expression in Nicotiana benthamiana to allow functional screening of candidate effectors from aphids

    Rodriguez, P. A., Hogenhout, S. A. & Bos, J. I. B. 2014 Plant-pathogen interactions: methods and protocols. Birch, P., Jones, J. T. & Bos, J. I. B. (eds.). Humana Press, p. 137-143 7 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

  23. Photosynthesis in early land plants: adapting to the terrestrial environment

    Raven, J. A. & Edwards, D. 2014 Photosynthesis in bryophytes and early land plants. Hanson , D. T. & Rice, S. K. (eds.). Springer, p. 29-58 30 p. (Advances in photosynthesis and respiration).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  24. Photosynthetic potential of planets in 3: 2 spin-orbit resonances

    Brown, S. P., Mead, A. J., Forgan, D. H., Raven, J. A. & Cockell, C. S. 2014 In : International Journal of Astrobiology.

    Research output: Contribution to journalArticle

  25. Plants and microclimate: a quantitative approach to environmental plant physiology

    Jones, H. G. 2014 3rd ed. Cambridge: Cambridge University Press. 407 p.

    Research output: Book/ReportBook

  26. Sequence diversity in the large subunit of RNA polymerase I contributes to Mefenoxam insensitivity in Phytophthora infestans

    Randall, E., Young, V., Sierotzki, H., Scalliet, G., Birch, P. R. J., Cooke, D. E. L., Csukai, M. & Whisson, S. C. 2014 In : Molecular Plant Pathology.

    Research output: Contribution to journalArticle

  27. Stability, across environments, of grain and alcohol yield, in soft wheat varieties grown for grain distilling or bioethanol production

    Swanston, J. S., Smith, P. L., Thomas, W. T. B., Sylvester-Bradley, R., Kindred, D., Brosnan, J. M., Bringhurst, T. A. & Agu, R. C. 2014 In : Journal of the Science of Food and Agriculture.

    Research output: Contribution to journalArticle

  28. The Effect of Diel Temperature and Light Cycles on the Growth of Nannochloropsis oculata in a Photobioreactor Matrix

    Tamburic, B., Guruprasad, S., Radford, D. T., Szabó, M., Lilley, R. M., Larkum, A. W. D., Franklin, J. B., Kramer, D. M., Blackburn, S. I., Raven, J. A., Schliep, M. & Ralph, P. J. 2014 In : PLoS ONE. 9, 1, p. e86047

    Research output: Contribution to journalArticle

  29. The feeding tube of cyst nematodes: characterisation of protein exclusion

    Eves-van den Akker, S., Lilley, C. J., Ault, J. R., Ashcroft, A. E., Jones, J. T. & Urwin, P. E. 2014 In : PLoS ONE. 9, 1, e87289

    Research output: Contribution to journalArticle

  30. The Irish potato famine pathogen Phytophthora infestans originated in central Mexico rather than the Andes

    Goss, E. M., Tabima, J. F., Cooke, D. E. L., Restrepo, S., Fry, W. E., Forbes, G. A., Fieland, V. J., Cardenas, M. & Grünwald, N. J. 2014 In : Proceedings of the National Academy of Sciences of the United States of America.

    Research output: Contribution to journalArticle

  31. The low recombining pericentromeric region of barley restricts gene diversity and evolution but not gene expression

    Baker, K., Bayer, M., Cook, N., Dreißig, S., Dhillon, T., Russell, J., Hedley, P. E., Morris, J., Ramsay, L., Colas, I., Waugh, R., Steffenson, B., Milne, I., Stephen, G., Marshall, D. & Flavell, A. J. 2014 In : Plant Journal.

    Research output: Contribution to journalArticle

  32. The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana

    Raczynska, K. D., Stepien, A., Kierzkowski, D., Kalak, M., Bajczyk, M., McNicol, J., Simpson, C. G., Szweykowska-Kulinska, Z., Brown, J. W. S. & Jarmolowski, A. 2014 In : Nucleic Acids Research. 42, 2, p. 1224-1244 21 p.

    Research output: Contribution to journalArticle

  33. Understanding the genetic control and physiological traits associated with rhizosheath production by barley (Hordeum vulgare)

    George, T. S., Brown, L. K., Ramsay, L., White, P. J., Newton, A. C., Bengough, A. G., Russell, J. & Thomas, W. T. B. 2014 In : New Phytologist.

    Research output: Contribution to journalArticle

  34. RNA function and phosphorus use by photosynthetic organisms

    Raven, J. A. 26 Dec 2013 In : Frontiers in Plant Science. 4, 536

    Research output: Contribution to journalArticle

  35. Arbuscular Mycorrhizal Fungal Networks Vary throughout the Growing Season and between Successional Stages

    Bennett, A. E., Daniell, T. J., Opik, M., Davison, J., Moora, M., Zobel, M., Selosse, M-A. & Evans, D. 17 Dec 2013 In : PLoS ONE. 8, 12, e83241

    Research output: Contribution to journalArticle

  36. Cell biology: up against the wall

    Halpin, C. 2 Dec 2013 In : Current Biology. 23, 23, p. R1048-1050

    Research output: Contribution to journalArticle

  37. The expansion of Phytophthora clade 8b: three new species associated with winter grown vegetable crops

    Bertier, L., Brouwer, H., Decock, A. W. A. M., Cooke, D. E. L., Olsson, C. H. B. & Hofte, M. Dec 2013 In : Persoonia. 31, p. 63-76 14 p.

    Research output: Contribution to journalArticle

  38. The sub-cellular localisation of the potato (Solanum tuberosum L.) carotenoid biosynthetic enzymes, CrtRb2 and PSY2

    Pasare, S., Wright, K., Campbell, R., Morris, W., Ducreux, L., Chapman, S., Bramley, P., Fraser, P., Roberts, A. & Taylor, M. Dec 2013 In : Protoplasma. 250, 6, p. 1381-1392 12 p.

    Research output: Contribution to journalArticle

  39. Top 10 plant-parasitic nematodes in molecular plant pathology

    Jones, J. T., Haegeman, A., Danchin, E. G. J., Gaur, H. S., Helder, J., Jones, M. G. K., Kikuchi, T., Manzanilla-López, R., Palomares-Rius, J. E., Wesemael, W. M. L. & Perry, R. N. Dec 2013 In : Molecular Plant Pathology. 14, 9, p. 946-961 16 p.

    Research output: Contribution to journalArticle

  40. Method for modifying lignin biosynthesis in plants

    Halpin, C., Simpson, G. & Boerjan, W. 14 Nov 2013 WO/2013/167902 A1

    Research output: Patent

  41. Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)

    Mascher, M., Muehlbauer, G. J., Rokhsar, D. S., Chapman, J., Schmutz, J., Barry, K., Munoz-Amatriain, M., Close, T. J., Wise, R. P., Schulman, A. H., Himmelbach, A., Mayer, K. F. X., Scholz, U., Poland, J. A., Stein, N. & Waugh, R. Nov 2013 In : Plant Journal. 76, 4, p. 718-727 10 p.

    Research output: Contribution to journalArticle

  42. Construction of reference chromosome-scale pseudomolecules for potato: integrating the potato genome with genetic and physical maps

    Sharma, S. K. , Bolser, D. , de Boer, J. , Sønderkær, M. , Amoros, W. , Carboni, M. F. , D'Ambrosio, J. M. , de la Cruz, G. , Di Genova, A. , Douches, D. S. , Eguiluz, M. , Guo, X. , Guzman, F. , Hackett, C. A. , Hamilton, J. P. , Li, G. , Li, Y. , Lozano, R. , Maass, A. , Marshall, D. & 25 others Martinez, D., McLean, K., Mejía, N., Milne, L., Munive, S., Nagy, I., Ponce, O., Ramirez, M., Simon, R., Thomson, S. J., Torres, Y., Waugh, R., Zhang, Z., Huang, S., Visser, R. G. F., Bachem, C. W. B., Sagredo, B., Feingold, S. E., Orjeda, G., Veilleux, R. E., Bonierbale, M., Jacobs, J. M. E., Milbourne, D., Martin, D. M. A. & Bryan, G. J. Nov 2013 In : G3 : Genes, Genomes, Genetics. 3, 11, p. 2031-2047 17 p.

    Research output: Contribution to journalArticle

  43. Transcription Termination and Chimeric RNA Formation Controlled by Arabidopsis thaliana FPA

    Duc, C., Sherstnev, A., Cole, C., Barton, G. & Simpson, G. G. 31 Oct 2013 In : PLoS Genetics. 9, 10, e1003867

    Research output: Contribution to journalArticle

  44. An RxLR Effector from Phytophthora infestans Prevents Re-localisation of Two Plant NAC Transcription Factors from the Endoplasmic Reticulum to the Nucleus

    McLellan, H., Boevink, P., Armstrong, M., Pritchard, L., Gomez, S., Morales, J., Whisson, S. & Birch, P. R. J. 10 Oct 2013 In : PLoS Pathogens. 9, 10, e1003670

    Research output: Contribution to journalArticle

  45. The RNA-binding protein FPA regulates flg22-triggered defense responses and transcription factor activity by alternative polyadenylation

    Lyons, R., Iwase, A., Gänsewig, T., Sherstnev, A., Duc, C., Barton, G. J., Hanada, K., Higuchi-Takeuchi, M., Matsui, M., Sugimoto, K., Kazan, K., Simpson, G. G. & Shirasu, K. 9 Oct 2013 In : Scientific Reports. 3, 10 p.2866

    Research output: Contribution to journalArticle

  46. Variation in the interaction between alleles of HvAPETALA2 and microRNA172 determines the density of grains on the barley inflorescence

    Houston, K., McKim, S. M., Comadran, J., Bonar, N., Druka, I., Uzrek, N., Cirillo, E., Guzy-Wrobelska, J., Collins, N. C., Halpin, C., Hansson, M., Dockter, C., Druka, A. & Waugh, R. 8 Oct 2013 In : Proceedings of the National Academy of Sciences of the United States of America. 110, 41, p. 16675-16680 6 p.

    Research output: Contribution to journalArticle

  47. Assessing the significance of soil erosion for arable weed seedbank diversity in agro-ecosystems

    Lewis, T. D., Rowan, J. S., Hawes, C. & McKenzie, B. M. Oct 2013 In : Progress in Physical Geography. 37, 5, p. 622-641 20 p.

    Research output: Contribution to journalArticle

  48. The evolution of autotrophy in relation to phosphorus requirement

    Raven, J. A. Oct 2013 In : Journal of Experimental Botany. 64, 13, p. 4023-4046 24 p.

    Research output: Contribution to journalArticle

  49. Caffeoyl shikimate esterase (CSE) is an enzyme in the lignin biosynthetic pathway in Arabidopsis

    Vanholme, R., Cesarino, I., Rataj, K., Xiao, Y., Sundin, L., Goeminne, G., Kim, H., Cross, J., Morreel, K., Araujo, P., Welsh, L., Haustraete, J., McClellan, C., Vanholme, B., Ralph, J., Simpson, G. G., Halpin, C. & Boerjan, W. 6 Sep 2013 In : Science. 341, 6150, p. 1103-1106 4 p.

    Research output: Contribution to journalArticle

  50. Biomechanics of nodal, seminal and lateral roots of barley: Effects of diameter, waterlogging and mechanical impedance

    Loades, K. W., Bengough, A. G., Bransby, M. F. & Hallett, P. D. 1 Sep 2013 In : Plant and Soil. 370, 1-2, p. 407-418 12 p.

    Research output: Contribution to journalArticle

  51. Algae influence the hydrophysical parameters of a sandy soil

    Lichner, L., Hallett, P. D., Drongová, Z., Czachor, H., Kovacik, L., Mataix-Solera, J. & Homolák, M. Sep 2013 In : CATENA. 108, p. 58-68 11 p.

    Research output: Contribution to journalArticle

  52. Do plants need nitrate?: the mechanisms by which nitrogen form affects plants

    Andrews, M., Raven, J. A. & Lea, P. J. Sep 2013 In : Annals of Applied Biology. 163, 2

    Research output: Contribution to journalArticle

  53. Plant SILAC: stable-isotope labelling with amino acids of Arabidopsis seedlings for quantitative proteomics

    Lewandowska, D., ten Have, S., Hodge, K., Tillemans, V., Lamond, A. I. & Brown, J. W. S. 20 Aug 2013 In : PLoS ONE. 8, 8, e72207

    Research output: Contribution to journalArticle

  54. Application of Bayesian Belief Networks to quantify and map areas at risk to soil threats: Using soil compaction as an example

    Troldborg, M., Aalders, I., Towers, W., Hallett, P. D., McKenzie, B. M., Bengough, A. G., Lilly, A., Ball, B. C. & Hough, R. L. Aug 2013 In : Soil & Tillage Research. 132, p. 56-68 13 p.

    Research output: Contribution to journalArticle

  55. Can root electrical capacitance be used to predict root mass in soil?

    Dietrich, R. C., Bengough, A. G., Jones, H. G. & White, P. J. Jul 2013 In : Annals of Botany. 112, 2, p. 457-464 8 p.

    Research output: Contribution to journalArticle

  56. Small changes in ambient temperature affect alternative splicing in Arabidopsis thaliana

    Streitner, C., Simpson, C. G., Shaw, P., Danisman, S., Brown, J. W. S. & Staiger, D. Jul 2013 In : Plant Signaling and Behavior. 8, 7, p. e24638.1-e24638.7 7 p.

    Research output: Contribution to journalArticle

  57. Day length dependent restructuring of the leaf transcriptome and metabolome in potato genotypes with contrasting tuberisation phenotypes

    Morris, W. L., Hancock, R. D., Ducreux, L. J. M., Morris, J. A., Usman, M., Verrall, S. R., Sharma, S. K., Bryan, G., McNicol, J. W., Hedley, P. E. & Taylor, M. A. Jun 2013 In : Plant, Cell & Environment. 37, 6, p. 1351-1363 13 p.

    Research output: Contribution to journalArticle

  58. Root–soil friction: quantification provides evidence for measurable benefits for manipulation of root-tip traits

    McKenzie, B. M., Mullins, C. E., Tisdall, J. M. & Bengough, A. G. Jun 2013 In : Plant, Cell & Environment. 36, 6, p. 1085-1092 8 p.

    Research output: Contribution to journalArticle

  59. Linkage analysis and QTL mapping using SNP dosage data in a tetraploid potato mapping population

    Hackett, C. A., McLean, K. & Bryan, G. J. 21 May 2013 In : PLoS ONE. 8, 5, e63939

    Research output: Contribution to journalArticle

  60. Exploitation of interspecific diversity for monocot crop improvement

    King, J., Armstead, I., Harper, J., Ramsey, L., Snape, J., Waugh, R., James, C., Thomas, A., Gasior, D., Kelly, R., Roberts, L., Gustafson, P. & King, I. May 2013 In : Heredity. 110, 5, p. 475-483 9 p.

    Research output: Contribution to journalArticle

  61. Iron acquisition and allocation in stramenopile algae

    Raven, J. A. May 2013 In : Journal of Experimental Botany. 64, 8, p. 2119-2127 9 p.

    Research output: Contribution to journalComment/debate

  62. Rubisco: still the most abundant protein of Earth?

    Raven, J. A. Apr 2013 In : New Phytologist. 198, 1, p. 1-3 3 p.

    Research output: Contribution to journalArticle

  63. Swansong biospheres: refuges for life and novel microbial biospheres on terrestrial planets near the end of their habitable lifetimes

    O'Malley-James, J. T., Greaves, J. S., Raven, J. A. & Cockell, C. S. Apr 2013 In : International Journal of Astrobiology. 12, 2, p. 99-112 14 p.

    Research output: Contribution to journalArticle

  64. The endophytic lifestyle of Escherichia coli O157:H7: quantification and internal localization in roots

    Wright, K. M., Chapman, S., McGeachy, K., Humphris, S., Campbell, E., Toth, I. K. & Holden, N. J. Apr 2013 In : Phytopathology. 103, 4, p. 333-340 8 p.

    Research output: Contribution to journalArticle

  65. Identification and Characterisation CRN Effectors in Phytophthora capsici Shows Modularity and Functional Diversity

    Stam, R., Jupe, J., Howden, A. J. M., Morris, J. A., Boevink, P. C., Hedley, P. E. & Huitema, E. 25 Mar 2013 In : PLoS ONE. 8, 3, 13 p.e59517

    Research output: Contribution to journalArticle

  66. Contributions of roots and rootstocks to sustainable, intensified crop production

    Gregory, P. J., Atkinson, C. J., Bengough, A. G., Else, M. A., Fernandez-Fernandez, F., Harrison, R. J. & Schmidt, S. Mar 2013 In : Journal of Experimental Botany. 64, 5, p. 1209-1222 14 p.

    Research output: Contribution to journalScientific review

  67. Efficient multiplex simple sequence repeat genotyping of the oomycete plant pathogen Phytophthora infestans

    Li, Y., Cooke, D. E. L., Jacobsen, E. & van der Lee, T. Mar 2013 In : Journal of Microbiological Methods. 92, 3, p. 316-322 7 p.

    Research output: Contribution to journalArticle

  68. How does glucophage (metformin) work? Investigation of the cellular action of chemical analogues

    Logie, L., Bacon, S., Middleton, P., Harthill, J., Coats, J., Stewart, D., Sakamoto, K., McDougall, G. & Rena, G. Mar 2013 In : Diabetic Medicine. 30, Suppl. 1, p. 41-41 1 p.P44

    Research output: Contribution to journalMeeting abstract

  69. A proteomic approach identifies many novel palmitoylated proteins in Arabidopsis

    Hemsley, P. A., Weimar, T., Lilley, K. S., Dupree, P. & Grierson, C. S. Feb 2013 In : New Phytologist. 197, 3, p. 805-814 10 p.

    Research output: Contribution to journalArticle

  70. Genetic and environmental effects on Tannin composition in strawberry (Fragaria x ananassa) cultivars grown in different European locations

    Josuttis, M., Verrall, S., Stewart, D., Krueger, E. & McDougall, G. J. 30 Jan 2013 In : Journal of Agricultural and Food Chemistry. 61, 4, p. 790-800 11 p.

    Research output: Contribution to journalArticle

  71. Using functional traits to quantify the value of plant communities to invertebrate ecosystem service providers in arable landscapes

    Storkey, J., Brooks, D., Haughton, A., Hawes, C., Smith, B. M. & Holland, J. M. Jan 2013 In : Journal of Ecology. 101, 1, p. 38-46 9 p.

    Research output: Contribution to journalArticle

  72. Phytophthora capsici-tomato interaction features dramatic shifts in gene expression associated with a hemi-biotrophic lifestyle

    Jupe, J., Stam, R., Howden, A. J. M., Morris, J. A., Zhang, R., Hedley, P. E. & Huitema, E. 2013 In : Genome Biology. 14, 6, R63

    Research output: Contribution to journalArticle

  73. A conceptual model of root hair ideotypes for future agricultural environments: what combination of traits should be targeted to cope with limited P availability?

    Brown, L. K., George, T. S., Dupuy, L. X. & White, P. J. 2013 In : Annals of Botany. 112, 2, p. 317-330 14 p.

    Research output: Contribution to journalEditorial

  74. Assaying protein s-acylation in plants

    Hemsley, P. A. 2013 G protein-couples receptor signaling in plants: methods and protocols. Running, M. P. (ed.). Humana Press, p. 141-146 6 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

  75. Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond

    Mascher, M. , Richmond, T. A. , Gerhardt, D. J. , Himmelbach, A. , Clissold, L. , Sampath, D. , Ayling, S. , Steuernagel, B. , Pfeifer, M. , D'Ascenzo, M. , Akhunov, E. D. , Hedley, P. E. , Gonzales, A. M. , Morrell, P. L. , Kilian, B. , Blattner, F. R. , Scholz, U. , Mayer, K. F. X. , Flavell, A. J. , Muehlbauer, G. J. & 3 others Waugh, R., Jeddeloh, J. A. & Stein, N. 2013 In : Plant Journal.

    Research output: Contribution to journalArticle

  76. Cells inside cells: Symbiosis and continuing phagotrophy

    Raven, J. A. 2013 In : Current Biology. 23, 12, p. 1081-1084 4 p.

    Research output: Contribution to journalArticle

  77. Characterisation of Phytophthora inundata according to host range, morphological variation and multigene molecular phylogeny

    Safaiefarahani, B., Mostowfizadeh-Ghalamfarsa, R. & Cooke, D. E. L. 2013 In : Phytopathologia mediterranea. 52, 1, p. 46-65 20 p.

    Research output: Contribution to journalArticle

  78. Characterization of cell death inducing Phytophthora capsici CRN effectors suggests diverse activities in the host nucleus

    Stam, R., Howden, A. J. M., Delgado Cerezo, M., Amaro, T. M. M. M., Motion, G. B., Pham, J. & Huitema, E. 2013 In : Frontiers in Plant Science. 4, 00387

    Research output: Contribution to journalArticle

  79. Draft Genome Sequences of 17 Isolates of the Plant Pathogenic Bacterium Dickeya

    Pritchard, L., Humphris, S., Saddler, G. S., Elphinstone, J. G., Pirhonen, M. & Toth, I. K. 2013 In : Genome Announcements. 1, 6, e00978-13

    Research output: Contribution to journalArticle

  80. Early root herbivory impairs arbuscular mycorrhizal fungal colonization and shifts defence allocation in establishing Plantago lanceolata

    Bennett, A. E., Caul, S., Johnson, S. N., Macrae, A. M. & Moore, B. D. 2013 In : PLoS ONE. 8, 6, e66053

    Research output: Contribution to journalArticle

  81. Editor's Choice: Evaluating the potential for adverse interactions within genetically engineered breeding stacks

    Steiner, H-Y., Halpin, C., Jez, J. M., Kough, J., Parrott, W., Underhill, L., Weber, N. & Curtis Hannah, L. 2013 In : Plant Physiology. 161, 4, p. 1587-1594 8 p.

    Research output: Contribution to journalArticle

  82. Elucidating phytochemical production in Juniperus sp.: seasonality and response to stress situations

    Tavares, L., Pimpao, R., McDougall, G., Stewart, D., Ferreira, R. B. & Santos, C. N. 2013 In : Journal of Agricultural and Food Chemistry. 61, 17, p. 4044-4052 9 p.

    Research output: Contribution to journalArticle

  83. Energy, genes and evolution: introduction to an evolutionary synthesis

    Lane, N., Martin, W. F., Raven, J. A. & Allen, J. F. 2013 In : Philosophical Transactions of the Royal Society B - Biological Sciences. 368, 1622, 5 p.ARTN 20120253

    Research output: Contribution to journalEditorial

  84. FR-H3: a new QTL to assist in the development of fall-sown barley with superior low temperature tolerance

    Fisk, S. P., Cuesta-Marcos, A., Cistue, L., Russell, J., Smith, K. P., Baenziger, S., Bedo, Z., Corey, A., Filichkin, T., Karsai, I., Waugh, R. & Hayes, P. M. 2013 In : Theoretical and Applied Genetics. 126, 2, p. 335-347 13 p.

    Research output: Contribution to journalArticle

  85. Genome-wide association mapping of frost tolerance in barley (Hordeum vulgare L.)

    Visioni, A., Tondelli, A., Francia, E., Pswarayi, A., Malosetti, M., Russell, J., Thomas, W., Waugh, R., Pecchioni, N., Romagosa, I. & Comadran, J. 2013 In : BMC Genomics. 14, 13 p.424

    Research output: Contribution to journalArticle

  86. High-throughput root phenotyping screens identify genetic loci associated with root architectural traits in Brassica napus under contrasting phosphate availabilities

    Shi, L., Shi, T., Broadley, M. R., White, P. J., Long, Y., Meng, J., Xu, F. & Hammond, J. P. 2013 In : Annals of Botany. 112, 2, p. 381-389 9 p.

    Research output: Contribution to journalArticle

  87. How does glucophage (metformin) work? Investigation of the cellular action of chemical analogues

    Logie, L., Bacon, S., Middleton, P., Harthill, J., Coats, J., Stewart, D., Sakamoto, K., McDougall, G. & Rena, G. 2013

    Research output: Contribution to conferencePoster

  88. Identification and Characterization of miRNA Transcriptome in Potato by High-Throughput Sequencing

    Zhang, R., Marshall, D., Bryan, G. J. & Hornyik, C. 2013 In : PLoS ONE. 8, 2, 9 p.ARTN e57233

    Research output: Contribution to journalArticle

  89. In vitro and in planta nematicidal activity of Fumaria parviflora (Fumariaceae) against the southern root-knot nematode Meloidogyne incognita

    Naz, I., Palomares-Rius, J. E., Saifullah, . N. V., Blok, V., Khan, M. R., Ali, S. & Ali, S. 2013 In : Molecular Plant Pathology. 62, 4, p. 943-952 10 p.

    Research output: Contribution to journalArticle

  90. Infra-red thermography for high throughput field phenotyping in Solanum tuberosum

    Prashar, A., Yildiz, J., McNicol, J. W., Bryan, G. J. & Jones, H. G. 2013 In : PLoS ONE. 8, 6, 9 p.ARTN e65816

    Research output: Contribution to journalArticle

  91. Interactions of photosynthesis with genome size and function

    Raven, J. A., Beardall, J., Larkum, A. W. D. & Sanchez-Baracaldo, P. 2013 In : Philosophical Transactions of the Royal Society B - Biological Sciences. 368, 1622, 11 p.20120264

    Research output: Contribution to journalScientific review

  92. Interference competition, not predation, explains the negative association between wood ants (Formica rufa) and abundance of ground beetles (Coleoptera: Carabidae)

    Hawes, C., Evans, H. F. & Stewart, A. J. A. 2013 In : Ecological Entomology. 38, 4, p. 315-322 8 p.

    Research output: Contribution to journalArticle

  93. Matching roots to their environment

    White, P. J., George, T. S., Gregory, P. J., Bengough, A. G., Hallett, P. D. & McKenzie, B. M. 2013 In : Annals of Botany. 112, 2, p. 207-222 16 p.

    Research output: Contribution to journalArticle

  94. Measuring variation in potato roots in both field and glasshouse: the search for useful yield predictors and a simple screen for root traits

    Wishart, J., George, T. S., Brown, L. K., Ramsay, G., Bradshaw, J. E., White, P. J. & Gregory, P. J. 2013 In : Plant and Soil. 368, 1-2, p. 231-249 19 p.

    Research output: Contribution to journalArticle

  95. Microbial responses to the erosional redistribution of soil organic carbon in arable fields.

    Dungait, J. A. J., Ghee, C., Rowan, J. S., McKenzie, B. M., Hawes, C., Dixon, E. R., Paterson, E. & Hopkins, D. W. 2013 In : Soil Biology & Biochemistry. 60, p. 195-201 7 p.

    Research output: Contribution to journalArticle

  96. Neuroprotective effects of digested polyphenols from wild blackberry species

    Tavares, L., Figueira, I., McDougall, G. J., Vieira, H. L. A., Stewart, D., Alves, P. M., Ferreira, R. B. & Santos, C. N. 2013 In : European Journal of Nutrition. 52, 1, p. 225-236 12 p.

    Research output: Contribution to journalArticle

  97. Palmitoylation in plants: New insights through proteomics

    Hemsley, P. A., Weimar, T., Lilley, K., Dupree, P. & Grierson, C. 2013 In : Plant Signaling and Behavior. 8, 8, e25209

    Research output: Contribution to journalArticle

  98. Pore shape and organic compounds drive major changes in the hydrological characteristics of agricultural soils

    Czachor, H., Hallett, P. D., Lichner, L. & Jozefaciuk, G. 2013 In : European Journal of Soil Science. 64, 3, p. 334-344 11 p.

    Research output: Contribution to journalArticle

  99. QuaNCAT: Quantitating proteome dynamics in primary cells

    Howden, A. J. M., Geoghegan, V., Katsch, K., Efstathiou, G., Bhushan, B., Boutureira, O., Thomas, B., Trudgian, D. C., Kessler, B. M., Dieterich, D. C., Davis, B. G. & Acuto, O. 2013 In : Nature Methods. 10, 4, p. 343-346 4 p.

    Research output: Contribution to journalArticle

  100. Regulation of RNA-dependent RNA polymerase 1 and isochorismate synthase gene expression in Arabidopsis

    Hunter, L. J. R., Westwood, J. H., Heath, G., Macaulay, K., Smith, A. G., MacFarlane, S. A., Palukaitis, P. & Carr, J. P. 2013 In : PLoS ONE. 8, 6, 10 p.e66530

    Research output: Contribution to journalArticle

  101. Response to soil biota by native, introduced non-pest, and pest grass species: is responsiveness a mechanism for invasion?

    Bennett, A. E. & Strauss, S. Y. 2013 In : Biological Invasions. 15, 6, p. 1343-1353 11 p.

    Research output: Contribution to journalArticle

  102. Root elongation rate is correlated with the length of the bare root apex of maize and lupin roots despite contrasting responses of root growth to compact and dry soils

    Schmidt, S., Gregory, P. J., Grinev, D. V. & Bengough, A. G. 2013 In : Plant and Soil. 372, 1-2, p. 609-618 10 p.

    Research output: Contribution to journalArticle

  103. Symbiotic relationships between soil fungi and plants reduce N2O emissions from soil

    Bender, S. F., Plantenga, F., Neftel, A., Jocher, M., Oberholzer, H-R., Köhl, L., Giles, M., Daniell, T. J. & van der Heijden, M. G. A. 2013 In : The ISME Journal.

    Research output: Contribution to journalArticle

  104. The early days of late blight

    Birch, P. R. J. & Cooke, D. E. L. 2013 In : eLife. 2013, 2, e00954

    Research output: Contribution to journalArticle

  105. The effects of ethylene, 1-MCP and AVG on sprouting in sweetpotato roots

    Cheema, M. U. A., Rees, D., Colgan, R. J., Taylor, M. & Westby, A. 2013 In : Postharvest Biology and Technology. 85, p. 89-93 5 p.

    Research output: Contribution to journalArticle

  106. The global nitrogen cycle in the twenty-first century

    Fowler, D., Pyle, J. A., Raven, J. A. & Sutton, M. A. 2013 In : Philosophical Transactions of the Royal Society B - Biological Sciences. 368, 1621, 2 p.20130165

    Research output: Contribution to journalEditorial

  107. The mixotrophic nature of photosynthetic plants

    Schmidt, S., Raven, J. A. & Paungfoo-Lonhienne, C. 2013 In : Functional Plant Biology. 40, 5, p. 425-438 14 p.

    Research output: Contribution to journalScientific review

  108. The rheological properties of the seed coat mucilage of Capsella bursa-pastoris L. Medik. (shepherd's purse)

    Deng, W., Iannetta, P. P. M., Hallett, P. D., Toorop, P. E., Squire, G. R. & Jeng, D-S. 2013 In : Biorheology. 50, 1-2, p. 57-67 11 p.

    Research output: Contribution to journalArticle

  109. The role of the potato (Solanum tuberosum) CCD8 gene in stolon and tuber development

    Pasare, S. A., Ducreux, L. J. M., Morris, W. L., Campbell, R., Sharma, S. K., Roumeliotis, E., Kohlen, W., van der Krol, S., Bramley, P. M., Roberts, A. G., Fraser, P. D. & Taylor, M. A. 2013 In : New Phytologist. 198, 4, p. 1108-1120 13 p.

    Research output: Contribution to journalArticle

  110. Timelapse scanning reveals spatial variation in tomato (Solanum lycopersicum L.) root elongation rates during partial waterlogging

    Dresboll, D. B., Thorup-Kristensen, K., McKenzie, B. M., Dupuy, L. X. & Bengough, A. G. 2013 In : Plant and Soil. 369, 1-2, p. 467-477 11 p.

    Research output: Contribution to journalArticle

  111. An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana

    Streitner, C., Köster, T., Simpson, C. G., Shaw, P., Danisman, S., Brown, J. W. S. & Staiger, D. Dec 2012 In : Nucleic Acids Research. 40, 22, p. 11240-11255 16 p.

    Research output: Contribution to journalArticle

  112. Crop genome plasticity and its Relevance to food and feed safety of genetically engineered breeding stacks

    Weber, N., Halpin, C., Curtis Hannah, L., Jez, J. M., Kough, J. & Parrott, W. Dec 2012 In : Plant Physiology. 160, 4, p. 1842-1853 12 p.

    Research output: Contribution to journalArticle

  113. Estimating root-soil contact from 3D X-ray microtomographs

    Schmidt, S., Bengough, A. G., Gregory, P. J., Grinev, D. V. & Otten, W. Dec 2012 In : European Journal of Soil Science. 63, 6, p. 776-786 11 p.

    Research output: Contribution to journalArticle

  114. Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley

    Comadran, J., Kilian, B., Russell, J., Ramsay, L., Stein, N., Ganal, M., Shaw, P., Bayer, M., Thomas, W., Marshall, D., Hedley, P., Tondelli, A., Pecchioni, N., Francia, E., Korzun, V., Walther, A. & Waugh, R. Dec 2012 In : Nature Genetics. 44, 12, p. 1388-1392 5 p.

    Research output: Contribution to journalLetter

  115. Relocalization of late blight resistance protein r3a to endosomal compartments is associated with effector recognition and required for the immune response.

    Engelhardt, S., Boevink, P. C., Armstrong, M. R., Ramos, M. B., Hein, I. & Birch, P. R. J. Dec 2012 In : Plant Cell. 24, 12, p. 5142-5158 16 p.

    Research output: Contribution to journalArticle

  116. A physical, genetic and functional sequence assembly of the barley genome

    Mayer, K. F. X., Waugh, R., Brown, J. W. S., Schulman, A., Langridge, P., Platzer, M., Fincher, G. B., Muehlbauer, G. J., Sato, K., Close, T. J., Wise, R. P., Stein, N. & International Barley Genome Sequencing Consortium 29 Nov 2012 In : Nature. 491, 7426, p. 711-716 6 p.

    Research output: Contribution to journalArticle

  117. Ultramorphology of the ovipositor of Venturia canescens (Gravenhorst) and possible mechanisms for oviposition

    Shah, Z. A., Blackwell, A. & Hubbard, S. F. Nov 2012 In : International Journal of Agriculture and Biology. 14, 6, p. 908-914 7 p.

    Research output: Contribution to journalArticle

  118. Comparison of two headspace sampling techniques for the analysis of off-flavour volatiles from oat based products

    Cognat, C., Shepherd, T., Verrall, S. R. & Stewart, D. 1 Oct 2012 In : Food Chemistry. 134, 3, p. 1592-1600 9 p.

    Research output: Contribution to journalArticle

  119. A new physical interpretation of plant root capacitance

    Dietrich, R. C., Bengough, A. G., Jones, H. G. & White, P. J. Oct 2012 In : Journal of Experimental Botany. 63, 17, p. 6149-6159 11 p.

    Research output: Contribution to journalArticle

  120. Mutation of Arabidopsis SPLICEOSOMAL TIMEKEEPER LOCUS1 causes Circadian clock defects

    Jones, M. A., Williams, B. A., McNicol, J., Simpson, C. G., Brown, J. W. S. & Harmer, S. L. Oct 2012 In : Plant Cell. 24, 10, p. 4066-82 17 p.

    Research output: Contribution to journalArticle

  121. Spatiotemporal asymmetry of the meiotic program underlies the predominantly distal distribution of meiotic crossovers in barley

    Higgins, J. D., Perry, R. M., Barakate, A., Ramsay, L., Waugh, R., Halpin, C., Armstrong, S. J. & Franklin, F. C. H. Oct 2012 In : Plant Cell. 24, 10, p. 4096-4109 14 p.

    Research output: Contribution to journalArticle

  122. Testing the distinctness of shoot ionomes of angiosperm families using the Rothamsted Park Grass Continuous Hay Experiment

    White, P. J., Broadley, M. R., Thompson, J. A., McNicol, J. W., Crawley, M. J., Poulton, P. R. & Johnston, A. E. Oct 2012 In : New Phytologist. 196, 1, p. 101-109 9 p.

    Research output: Contribution to journalArticle

  123. Thermoplasticity in the plant circadian clock: how plants tell the time-perature

    James, A. B., Hasan-Syed, N., Brown, J. W. S. & Nimmo, H. G. Oct 2012 In : Plant Signaling and Behavior. 7, 10, p. 1219-23 5 p.

    Research output: Contribution to journalArticle

  124. Antioxidant capacity, total phenolic and ascorbate content as a function of the genetic diversity of leek (Allium ampeloprasum var. porrum)

    Bernaert, N., De Paepe, D., Bouten, C., De Clercq, H., Stewart, D., Van Bockstaele, E., De Loose, M. & Van Droogenbroeck, B. 15 Sep 2012 In : Food Chemistry. 134, 2, p. 669-677 9 p.

    Research output: Contribution to journalArticle

  125. Transparent soil for imaging the rhizosphere

    Downie, H., Holden, N., Otten, W., Spiers, A. J., Valentine, T. A. & Dupuy, L. X. 11 Sep 2012 In : PLoS ONE. 7, 9, e44276

    Research output: Contribution to journalArticle

  126. Impact of Anthocyanin chemical structure found in pomegranate juice on leukaemia treatment

    Dahlawi, H., Jordan-Mahy, N., Clench, M. R., McDougall, G. J. & Le Maitre, C. Sep 2012 In : Journal of Pathology. 228, Suppl. 1, p. S37-S37 1 p.

    Research output: Contribution to journalMeeting abstract

  127. The anti-cancerous potential of polyphenols in the treatment of human myeloid and lymphoid leukaemia

    Mahbub, A., Le Maitre, C., Haywood-Small, S. L., McDougall, G., Cross, N. A. & Jordan-Mahy, N. Sep 2012 In : Journal of Pathology. 228, Suppl. 1, p. S34-S34 1 p.

    Research output: Contribution to journalMeeting abstract

  128. Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

    Bulgarelli, D., Rott, M., Schlaeppi, K., van Themaat, E. V. L., Ahmadinejad, N., Assenza, F., Rauf, P., Huettel, B., Reinhardt, R., Schmelzer, E., Peplies, J., Gloeckner, F. O., Amann, R., Eickhorst, T. & Schulze-Lefert, P. 2 Aug 2012 In : Nature. 488, 7409, p. 91-95 5 p.

    Research output: Contribution to journalArticle

  129. Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation

    Sherstnev, A., Duc, C., Cole, C., Zacharaki, V., Hornyik, C., Ozsolak, F., Milos, P. M., Barton, G. J. & Simpson, G. G. Aug 2012 In : Nature Structural & Molecular Biology. 19, 8, p. 845-852 8 p.

    Research output: Contribution to journalArticle

  130. Genetic characterization of a reciprocal translocation present in a widely grown barley variety

    Farre, A., Cuadrado, A., Lacasa-Benito, I., Cistue, L., Schubert, I., Comadran, J., Jansen, J. & Romagosa, I. Aug 2012 In : Molecular Breeding. 30, 2, p. 1109-1119 11 p.

    Research output: Contribution to journalArticle

  131. Host Protein BSL1 Associates with Phytophthora infestans RXLR Effector AVR2 and the Solanum demissum Immune Receptor R2 to Mediate Disease Resistance: Effector AVR2 Associates with BSL1

    Saunders, D. G. O., Breen, S., Win, J., Schornack, S., Hein, I., Bozkurt, T. O., Champouret, N., Vleeshouwers, V. G. A. A., Birch, P. R. J., Gilroy, E. M. & Kamoun, S. Aug 2012 In : Plant Cell. 24, 8, p. 3420-3434 14 p.

    Research output: Contribution to journalArticle

  132. Nature and nurture: the importance of seed phosphorus content

    White, P. J. & Veneklaas, E. J. Aug 2012 In : Plant and Soil. 357, 1-2, p. 1-8 8 p.

    Research output: Contribution to journalEditorial

  133. Soil fungal community composition does not alter along a latitudinal gradient through the maritime and sub-Antarctic

    Dennis, P. G., Rushton, S. P., Newsham, K. K., Lauducina, V. A., Ord, V. J., Daniell, T. J., O'Donnell, A. G. & Hopkins, D. W. Aug 2012 In : Fungal Ecology. 5, 4, p. 403-408 6 p.

    Research output: Contribution to journalArticle

  134. Novel bacteriophages containing a genome of another bacteriophage within their genomes

    Swanson, M. M., Reavy, B., Makarova, K. S., Cock, P. J., Hopkins, D. W., Torrance, L., Koonin, E. V. & Taliansky, M. 17 Jul 2012 In : PLoS ONE. 7, 7, p. - 12 p.e40683

    Research output: Contribution to journalArticle

  135. Decomposition of tobacco roots with modified phenylpropanoid content by fungi with contrasting lignocellulose degradation strategies

    Tilston, E. L., Halpin, C. & Hopkins, D. W. Jul 2012 In : Biology and Fertility of Soils. p. 1-7 7 p.

    Research output: Contribution to journalArticle

  136. Raspberry viruses manipulate the behaviour of their insect vectors

    McMenemy, L. S., Hartley, S. E., MacFarlane, S. A., Karley, A. J., Shepherd, T. & Johnson, S. N. Jul 2012 In : Entomologia Experimentalis et Applicata. 144, 1, p. 56-68 13 p.

    Research output: Contribution to journalArticle

  137. Soil strength and macropore volume limit root elongation rates in many UK agricultural soils

    Valentine, T. A., Hallett, P. D., Binnie, K., Young, M. W., Squire, G. R., Hawes, C. & Bengough, A. G. Jul 2012 In : Annals of Botany. 110, 2, p. 259-270 12 p.

    Research output: Contribution to journalArticle

  138. The Mediator subunit SFR6/MED16 controls defence gene expression mediated by salicylic acid and jasmonate responsive pathways

    Wathugala, D. L., Hemsley, P. A., Moffat, C. S., Cremelie, P., Knight, M. R. & Knight, H. Jul 2012 In : New Phytologist. 195, 1, p. 217-230 14 p.

    Research output: Contribution to journalArticle

  139. Analysis of the barley bract suppression gene Trd1

    Houston, K., Druka, A., Bonar, N., Macaulay, M., Lundqvist, U., Franckowiak, J., Morgante, M., Stein, N. & Waugh, R. Jun 2012 In : Theoretical and Applied Genetics. 125, 1, p. 33-45 13 p.

    Research output: Contribution to journalArticle

  140. Cellular Responses to the Metal-Binding Properties of Metformin

    Logie, L., Harthill, J., Patel, K., Bacon, S., Hamilton, D. L., Macrae, K., McDougall, G., Wang, H-H., Xue, L., Jiang, H., Sakamoto, K., Prescott, A. R. & Rena, G. Jun 2012 In : Diabetes. 61, 6, p. 1423-1433 11 p.

    Research output: Contribution to journalArticle

  141. Inhibition of acetylcholinesterase by green and white tea and their simulated intestinal metabolites

    Okello, E. J., Leylabi, R. & McDougall, G. J. Jun 2012 In : Food & Function. 3, 6, p. 651-661 11 p.

    Research output: Contribution to journalArticle

  142. Protein turnover and plant RNA and phosphorus requirements in relation to nitrogen fixation

    Raven, J. A. Jun 2012 In : Plant Science. 188, p. 25-35 11 p.

    Research output: Contribution to journalScientific review

  143. Some elements are more equal than others: soil-to-plant transfer of radiocaesium and radiostrontium, revisited

    Broadley, M. R. & White, P. J. Jun 2012 In : Plant and Soil. 355, 1-2, p. 23-27 5 p.

    Research output: Contribution to journalEditorial

  144. The tomato genome sequence provides insights into fleshy fruit evolution

    Sato, S. , Tabata, S. , Hirakawa, H. , Asamizu, E. , Shirasawa, K. , Isobe, S. , Kaneko, T. , Nakamura, Y. , Shibata, D. , Aoki, K. , Egholm, M. , Knight, J. , Bogden, R. , Li, C. , Shuang, Y. , Xu, X. , Pan, S. , Cheng, S. , Liu, X. , Ren, Y. & 303 others Wang, J., Albiero, A., Dal Pero, F., Todesco, S., Van Eck, J., Buels, R. M., Bombarely, A., Gosselin, J. R., Huang, M., Leto, J. A., Menda, N., Strickler, S., Mao, L., Gao, S., Tecle, I. Y., York, T., Zheng, Y., Vrebalov, J. T., Lee, J., Zhong, S., Mueller, L. A., Stiekema, W. J., Ribeca, P., Alioto, T., Yang, W., Huang, S., Du, Y., Zhang, Z., Gao, J., Guo, Y., Wang, X., Li, Y., He, J., Li, C., Cheng, Z., Zuo, J., Ren, J., Zhao, J., Yan, L., Jiang, H., Wang, B., Li, H., Li, Z., Fu, F., Chen, B., Han, B., Feng, Q., Fan, D., Wang, Y., Ling, H., Xue, Y., Ware, D., McCombie, W. R., Lippman, Z. B., Chia, J-M., Jiang, K., Pasternak, S., Gelley, L., Kramer, M., Anderson, L. K., Chang, S-B., Royer, S. M., Shearer, L. A., Stack, S. M., Rose, J. K. C., Xu, Y., Eannetta, N., Matas, A. J., McQuinn, R., Tanksley, S. D., Camara, F., Guigo, R., Rombauts, S., Fawcett, J., Van de Peer, Y., Zamir, D., Liang, C., Spannagl, M., Gundlach, H., Bruggmann, R., Mayer, K., Jia, Z., Zhang, J., Ye, Z., Bishop, G. J., Butcher, S., Lopez-Cobollo, R., Buchan, D., Filippis, I., Abbott, J., Dixit, R., Singh, M., Singh, A., Pal, J. K., Pandit, A., Singh, P. K., Mahato, A. K., Dogra, V., Gaikwad, K., Sharma, T. R., Mohapatra, T., Singh, N. K., Causse, M., Rothan, C., Schiex, T., Noirot, C., Bellec, A., Klopp, C., Delalande, C., Berges, H., Mariette, J., Frasse, P., Vautrin, S., Zouine, M., Latche, A., Rousseau, C., Regad, F., Pech, J-C., Philippot, M., Bouzayen, M., Pericard, P., Osorio, S., Fernandez del Carmen, A., Monforte, A., Granell, A., Fernandez-Munoz, R., Conte, M., Lichtenstein, G., Carrari, F., De Bellis, G., Fuligni, F., Peano, C., Grandillo, S., Termolino, P., Pietrella, M., Fantini, E., Falcone, G., Fiore, A., Giuliano, G., Lopez, L., Facella, P., Perrotta, G., Daddiego, L., Bryan, G., Orozco, M., Pastor, X., Torrents, D., van Schriek, K. N. V. M. G. M., Feron, R. M. C., van Oeveren, J., de Heer, P., daPonte, L., Jacobs-Oomen, S., Cariaso, M., Prins, M., van Eijk, M. J. T., Janssen, A., van Haaren, M. J. J., Jo, S-H., Kim, J., Kwon, S-Y., Kim, S., Koo, D-H., Lee, S., Hur, C-G., Clouser, C., Rico, A., Hallab, A., Gebhardt, C., Klee, K., Jöcker, A., Warfsmann, J., Goebel, U., Kawamura, S., Yano, K., Sherman, J. D., Fukuoka, H., Negoro, S., Bhutty, S., Chowdhury, P., Chattopadhyay, D., Datema, E., Smit, S., Schijlen, E. W. M., van de Belt, J., van Haarst, J. C., Peters, S. A., van Staveren, M. J., Henkens, M. H. C., Mooyman, P. J. W., Hesselink, T., van Ham, R. C. H. J., Jiang, G., Droege, M., Choi, D., Kang, B-C., Kim, B. D., Park, M., Kim, S., Yeom, S-I., Lee, Y-H., Choi, Y-D., Li, G., Gao, J., Liu, Y., Huang, S., Fernandez-Pedrosa, V., Collado, C., Zuniga, S., Wang, G., Cade, R., Dietrich, R. A., Rogers, J., Knapp, S., Fei, Z., White, R. A., Thannhauser, T. W., Giovannoni, J. J., Angel Botella, M., Gilbert, L., Gonzalez, R., Goicoechea, J. L., Yu, Y., Kudrna, D., Collura, K., Wissotski, M., Wing, R., Schoof, H., Meyers, B. C., Gurazada, A. B., Green, P. J., Mathur, S., Vyas, S., Solanke, A. U., Kumar, R., Gupta, V., Sharma, A. K., Khurana, P., Khurana, J. P., Tyagi, A. K., Dalmay, T., Mohorianu, I., Walts, B., Chamala, S., Barbazuk, W. B., Li, J., Guo, H., Lee, T-H., Wang, Y., Zhang, D., Paterson, A. H., Wang, X., Tang, H., Barone, A., Chiusano, M. L., Ercolano, M. R., D'Agostino, N., Di Filippo, M., Traini, A., Sanseverino, W., Frusciante, L., Seymour, G. B., Elharam, M., Fu, Y., Hua, A., Kenton, S., Lewis, J., Lin, S., Najar, F., Lai, H., Qin, B., Qu, C., Shi, R., White, D., White, J., Xing, Y., Yang, K., Yi, J., Yao, Z., Zhou, L., Roe, B. A., Vezzi, A., D'Angelo, M., Zimbello, R., Schiavon, R., Caniato, E., Rigobello, C., Campagna, D., Vitulo, N., Valle, G., Nelson, D. R., De Paoli, E., Szinay, D., de Jong, H. H., Bai, Y., Visser, R. G. F., Lankhorst, R. M. K., Beasley, H., McLaren, K., Nicholson, C., Riddle, C., Gianese, G. & Tomato Genome Consortium 31 May 2012 In : Nature. 485, 7400, p. 635-641 7 p.

    Research output: Contribution to journalArticle

  145. Over-seasons analysis of quantitative trait loci affecting phenolic content and antioxidant capacity in raspberry

    Dobson, P., Graham, J., Stewart, D., Brennan, R., Hackett, C. A. & McDougall, G. J. 30 May 2012 In : Journal of Agricultural and Food Chemistry. 60, 21, p. 5360-5366 7 p.

    Research output: Contribution to journalArticle

  146. Distribution of calcium (Ca) and magnesium (Mg) in the leaves of Brassica rapa under varying exogenous Ca and Mg supply

    Rios, J. J., Lochlainn, S. O., Devonshire, J., Graham, N. S., Hammond, J. P., King, G. J., White, P. J., Kurup, S. & Broadley, M. R. May 2012 In : Annals of Botany. 109, 6, p. 1081-1089 9 p.

    Research output: Contribution to journalArticle

  147. Genetic structure among arable populations of Capsella bursa-pastoris is linked to functional traits and in-field conditions

    Begg, G. S., Wishart, J., Young, M. W., Squire, G. R. & Iannetta, P. P. M. May 2012 In : Ecography. 35, 5, p. 446-457 12 p.

    Research output: Contribution to journalArticle

  148. Inactivation of PbTopo III beta causes hyper-excision of the Pathogenicity Island HAI2 resulting in reduced virulence of Pectobacterium atrosepticum

    Vanga, B. R., Butler, R. C., Toth, I. K., Ronson, C. W. & Pitman, A. R. May 2012 In : Molecular Microbiology. 84, 4, p. 648-663 16 p.

    Research output: Contribution to journalArticle

  149. Lipophilic components in black currant seed and pomace extracts

    Dobson, G., Shrestha, M., Hilz, H., Karjalainen, R., McDougall, G. & Stewart, D. May 2012 In : European Journal of Lipid Science and Technology. 114, 5, p. 575-582 8 p.

    Research output: Contribution to journalArticle

  150. Oviposition and feeding behaviour by the vine weevil Otiorhynchus sulcatus on red raspberry: effects of cultivars and plant nutritional status

    Clark, K. E., Hartley, S. E., Brennan, R. M., MacKenzie, K. & Johnson, S. N. May 2012 In : Agricultural and Forest Entomology. 14, 2, p. 157-163 7 p.

    Research output: Contribution to journalArticle

  151. Plant phytaspases and animal caspases: structurally unrelated death proteases with a common role and specificity

    Chichkova, N. V., Tuzhikov, A. I., Taliansky, M. & Vartapetian, A. B. May 2012 In : Physiologia Plantarum. 145, 1, p. 77-84 8 p.

    Research output: Contribution to journalArticle

  152. Protein elemental sparing and codon usage bias are correlated among bacteria

    Bragg, J. G., Quigg, A., Raven, J. A. & Wagner, A. May 2012 In : Molecular Ecology. 21, 10, p. 2480-2487 8 p.

    Research output: Contribution to journalArticle

  153. The extreme N-terminal domain of a hordeivirus TGB1 movement protein mediates its localization to the nucleolus and interaction with fibrillarin

    Semashko, M. A., Gonzalez, I., Shaw, J., Leonova, O. G., Popenko, V. I., Taliansky, M. E., Canto, T. & Kalinina, N. O. May 2012 In : Biochimie. 94, 5, p. 1180-1188 9 p.

    Research output: Contribution to journalArticle

  154. The oomycete broad-host-range pathogen Phytophthora capsici

    Lamour, K. H., Stam, R., Jupe, J. & Huitema, E. May 2012 In : Molecular Plant Pathology. 13, 4, p. 329-337 9 p.

    Research output: Contribution to journalArticle

  155. Alignment-free design of highly discriminatory diagnostic primer sets for Escherichia coli O104: H4 outbreak strains

    Pritchard, L., Holden, N. J., Bielaszewska, M., Karch, H. & Toth, I. K. 5 Apr 2012 In : PLoS ONE. 7, 4, 8 p.e34498

    Research output: Contribution to journalArticle

  156. Evaluation and implementation of a potential diagnostic molecular marker for H1-conferred potato cyst nematode resistance in potato (Solanum tuberosum L.)

    Schultz, L., Cogan, N. O. I., McLean, K., Dale, M. F. B., Bryan, G. J., Forster, J. W. & Slater, A. T. Apr 2012 In : Plant Breeding. 131, 2, p. 315-321 7 p.

    Research output: Contribution to journalArticle

  157. Genetic linkage mapping in an F2 perennial ryegrass population using DArT markers

    Tomaszewski, C., Byrne, S. L., Foito, A., Kildea, S., Kopecky, D., Dolezel, J., Heslop-Harrison, J. S. . P. A. T., Stewart, D. & Barth, S. Apr 2012 In : Plant Breeding. 131, 2, p. 345-349 5 p.

    Research output: Contribution to journalArticle

  158. How do rootstocks control shoot water relations?

    Jones, H. G. Apr 2012 In : New Phytologist. 194, 2, p. 301-303 3 p.

    Research output: Contribution to journalEditorial

  159. Soil tillage effects on the efficacy of cultivars and their mixtures in winter barley

    Newton, A. C., Guy, D. C., Bengough, A. G., Gordon, D. C., McKenzie, B. M., Sun, B., Valentine, T. A. & Hallett, P. D. 14 Mar 2012 In : Field Crops Research. 128, p. 91-100 10 p.

    Research output: Contribution to journalArticle

  160. A molecular method to assess Phytophthora diversity in environmental samples

    Scibetta, S., Schena, L., Chimento, A., Cacciola, S. O. & Cooke, D. E. L. Mar 2012 In : Journal of Microbiological Methods. 88, 3, p. 356-368 13 p.

    Research output: Contribution to journalArticle

  161. Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis

    Kalyna, M., Simpson, C. G., Syed, N. H., Lewandowska, D., Marquez, Y., Kusenda, B., Marshall, J., Fuller, J., Cardle, L., McNicol, J., Dinh, H. Q., Barta, A. & Brown, J. W. S. Mar 2012 In : Nucleic Acids Research. 40, 6, p. 2454-2469 16 p.

    Research output: Contribution to journalArticle

  162. Bio-fortification of potato tubers using foliar zinc-fertiliser

    White, P. J., Broadley, M. R., Hammond, J. P., Ramsay, G., Subramanian, N. K., Thompson, J. & Wright, G. Mar 2012 In : Journal of Horticultural Science & Biotechnology. 87, 2, p. 123-129 7 p.

    Research output: Contribution to journalArticle

  163. Islands and streams: clusters and gene flow in wild barley populations from the Levant

    Hübner, S., Guenther, T., Flavell, A., Fridman, E., Graner, A., Korol, A. & Schmid, K. J. Mar 2012 In : Molecular Ecology. 21, 5, p. 1115-1129 15 p.

    Research output: Contribution to journalArticle

  164. Predicting Penetrometer Resistance from the Compression Characteristic of Soil

    Gao, W., Ren, T., Bengough, A. G., Auneau, L., Watts, C. W. & Whalley, W. R. Mar 2012 In : Soil Science Society of America Journal. 76, 2, p. 361-369 9 p.

    Research output: Contribution to journalArticle

  165. Identification and localisation of the NB-LRR gene family within the potato genome

    Jupe, F., Pritchard, L., Etherington, G. J., MacKenzie, K., Cock, P. J. A., Wright, F., Sharma, S. K., Bolser, D., Bryan, G. J., Jones, J. D. G. & Hein, I. 15 Feb 2012 In : BMC Genomics. 13, p. - 14 p.75

    Research output: Contribution to journalArticle

  166. Host-targeting protein 1 (SpHtp1) from the oomycete Saprolegnia parasitica translocates specifically into fish cells in a tyrosine-O-sulphate-dependent manner

    Wawra, S., Bain, J., Durward, E., de Bruijn, I., Minor, K. L., Matena, A., Löbach, L., Whisson, S. C., Bayer, P., Porter, A. J., Birch, P. R. J., Secombes, C. J. & van West, P. 7 Feb 2012 In : Proceedings of the National Academy of Sciences of the United States of America. 109, 6, p. 2096-2101 6 p.

    Research output: Contribution to journalArticle

  167. A mathematical model of mucilage expansion in myxospermous seeds of Capsella bursa-pastoris (shepherd's purse)

    Deng, W., Jeng, D-S., Toorop, P. E., Squire, G. R. & Iannetta, P. P. M. Feb 2012 In : Annals of Botany. 109, 2, p. 419-427 9 p.

    Research output: Contribution to journalArticle

  168. Infestation of potato (Solanum tuberosum L.) by the peach-potato aphid (Myzus persicae Sulzer) alters cellular redox status and is influenced by ascorbate

    Kerchev, P. I., Fenton, B., Foyer, C. H. & Hancock, R. D. Feb 2012 In : Plant, Cell & Environment. 35, 2, p. 430-440 11 p.

    Research output: Contribution to journalArticle

  169. Plant responses to insect herbivory: interactions between photosynthesis, reactive oxygen species and hormonal signalling pathways

    Kerchev, P. I., Fenton, B., Foyer, C. H. & Hancock, R. D. Feb 2012 In : Plant, Cell & Environment. 35, 2, p. 441-453 13 p.

    Research output: Contribution to journalArticle

  170. Opportunities for improving phosphorus-use efficiency in crop plants

    Veneklaas, E. J., Lambers, H., Finnegan, P. M., Price, C. A., Shane, M. W., Raven, J. A., Bragg, J., Lovelock, C. E., Plaxton, W. C., Scheible, W-R. & White, P. J. 1 Jan 2012 In : New Phytologist. p. 306-320 15 p.

    Research output: Contribution to journalArticle

  171. Analyzing lateral root development: how to move forward

    Bengough, A. G. & 23 others De Smet, I., White, P. J., Dupuy, L., Parizot, B., Casimiro, I., Heidstra, R., Laskowski, M., Lepetit, M., Hochholdinger, F., Draye, X., Zhang, H., Broadley, M. R., Peret, B., Hammond, J. P., Fukaki, H., Mooney, S., Lynch, J. P., Nacry, P., Schurr, U., Laplaze, L., Benfey, P., Beeckman, T. & Bennett, M. Jan 2012 In : Plant Cell. 24, 1, p. 15-20 6 p.

    Research output: Contribution to journalEditorial

  172. Centrifuge modelling of soil slopes containing model plant roots

    Sonnenberg, R., Bransby, M. F., Bengough, A. G., Hallett, P. D. & Davies, M. C. R. Jan 2012 In : Canadian Geotechnical Journal. 49, 1, p. 117 17 p.

    Research output: Contribution to journalArticle

  173. Nucleoli: composition, function, and dynamics

    Shaw, P. & Brown, J. Jan 2012 In : Plant Physiology. 158, 1, p. 44-51 8 p.

    Research output: Contribution to journalArticle

  174. A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis

    Vanholme, R., Storme, V., Vanholme, B., Sundin, L., Christensen, J. H., Goeminne, G., Halpin, C., Rohde, A., Morreel, K. & Boerjan, W. 2012 In : Plant Cell. 24, 9, p. 3506-3529 24 p.

    Research output: Contribution to journalArticle

  175. Algal biogeography: Metagenomics shows distribution of a picoplanktonic pelagophyte

    Raven, J. A. 2012 In : Current Biology. 22, 17

    Research output: Contribution to journalArticle

  176. Alternative splicing in plants-coming of age

    Hasan-Syed, N., Kalyna, M., Marquez, Y., Barta, A. & Brown, J. W. S. 2012 In : Trends in Plant Science. 17, 10, p. 616-623 8 p.

    Research output: Contribution to journalArticle

  177. Alternative splicing mediates responses of the Arabidopsis circadian clock to temperature changes

    James, A. B., Syed, N. H., Bordage, S., Marshall, J., Nimmo, G. A., Jenkins, G. A., Herzyk, P., Brown, J. W. S. & Nimmo, H. G. 2012 In : Plant Cell. 24, 3, p. 961-981 21 p.

    Research output: Contribution to journalArticle

  178. Avirulence protein 3a (AVR3a) from the potato pathogen Phytophthora infestans forms homodimers through its predicted translocation region and does not specifically bind phospholipids

    Wawra, S., Agacan, M., Boddey, J. A., Davidson, I., Gachon, C. M. M., Zanda, M., Grouffaud, S., Whisson, S. C., Birch, P. R. J., Porter, A. J. & Van West, P. 2012 In : Journal of Biological Chemistry. 287, 45, p. 38101-38109 9 p.

    Research output: Contribution to journalArticle

  179. Bioindication potential of using molecular characterisation of the nematode community: response to soil tillage

    Griffiths, B. S., Daniell, T. J., Donn, S. & Neilson, R. 2012 In : European Journal of Soil Biology. 49, p. 92-97 6 p.

    Research output: Contribution to journalArticle

  180. Changes in pH at the exterior surface of plankton with ocean acidification

    Flynn, K. J., Blackford, J. C., Baird, M. E., Raven, J. A., Clark, D. R., Beardall, J., Brownlee, C., Fabian, H. & Wheeler, G. L. 2012 In : Nature Climate Change. 2, 7, p. 510-513 4 p.

    Research output: Contribution to journalArticle

  181. Comparison of effects of biguanide and diguanidine antihyperglycaemic drugs on cell signalling responses

    Bacon, S., Harthill, J., Coats, J., Stewart, D., McDougall, G. & Rena, G. 2012

    Research output: Contribution to conferencePoster

  182. Comparison of effects of biguanide and diguanidine antihyperglycaemic drugs on cell signalling responses

    Bacon, S., Harthill, J., Coates, J., Stewart, D., McDougall, G. & Rena, G. 2012 In : Diabetic Medicine. 29, Suppl. 1, p. 41 1 p.P41

    Research output: Contribution to journalMeeting abstract

  183. Comparison of transcript profiles in different life stages of the nematode Globodera pallida under different host potato genotypes

    Palomares-Rius, J. E., Hedley, P. E., Cock, P. J. A., Morris, J. A., Jones, J. T., Vovlas, N. & Blok, V. 2012 In : Molecular Plant Pathology. 13, 9, p. 1120-1134 15 p.

    Research output: Contribution to journalArticle

  184. Control of foliar diseases in barley: towards an integrated approach

    Walters, D. R., Avrova, A., Bingham, I. J., Burnett, F. J., Fountaine, J., Havis, N. D., Hoad, S. P., Hughes, G., Looseley, M., Oxley, S. J. P., Renwick, A., Topp, C. F. E. & Newton, A. C. 2012 In : European Journal of Plant Pathology. 133, 1, p. 33-73 41 p.

    Research output: Contribution to journalArticle

  185. Dietary requirements for magnesium, but not calcium, are likely to be met in Malawi based on national food supply data

    Broadley, M. R., Chilimba, A. D. C., Joy, E. J. M., Young, S. D., Black, C. R., Ander, L. E., Watts, M. J., Hurst, R., Fairweather-Tait, S. J., White, P. J. & Gibson, R. S. 2012 In : International Journal for Vitamin and Nutrition Research. 82, 3, p. 192-199 8 p.

    Research output: Contribution to journalArticle

  186. Ecophysiology of photosynthesis in macroalgae

    Raven, J. A. & Hurd, C. L. 2012 In : Photosynthesis Research. p. 105-125 21 p.

    Research output: Contribution to journalArticle

  187. Effector-triggered post-translational modifications and their role in suppression of plant immunity

    Howden, A. J. M. & Huitema, E. 2012 In : Frontiers in Plant Science. 3, July, 160

    Research output: Contribution to journalArticle

  188. Genetic diversity in European Pisum germplasm collections

    Jing, R., Ambrose, M. A., Knox, M. R., Smykal, P., Hybl, M., Ramos, A., Caminero, C., Burstin, J., Duc, G., van Soest, L. J. M., Swiecicki, W. K., Pereira, M. G., Vishnyakova, M., Davenport, G. F., Flavell, A. J. & Ellis, T. H. N. 2012 In : Theoretical and Applied Genetics. 125, 2, p. 367-380 14 p.

    Research output: Contribution to journalArticle

  189. Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici

    Huitema, E. & 34 others Lamour, K. H., Mudge, J., Gobena, D., Hurtado-Gonzales, O. P., Schmutz, J., Kuo, A., Miller, N. A., Rice, B. J., Raffaele, S., Cano, L. M., Bharti, A. K., Donahoo, R. S., Finley, S., Hulvey, J., Platt, D., Salamov, A., Savidor, A., Sharma, R., Stam, R., Storey, D., Thines, M., Win, J., Haas, B. J., Dinwiddie, D. L., Jenkins, J., Knight, J. R., Affourtit, J. P., Han, C. S., Chertkov, O., Lindquist, E. A., Detter, C., Grigoriev, I. V., Kamoun, S. & Kingsmore, S. F. 2012 In : Molecular Plant - Microbe Interactions. 25, 10, p. 1350-60 11 p.

    Research output: Contribution to journalArticle

  190. Mutant phenotyping and pre-breeding in barley

    Forster, B. P., Franckowiak, J. D., Lundqvist, U., Thomas, W. T. B., Leader, D., Shaw, P., Lyon, J. & Waugh, R. 2012 Plant mutation breeding and biotechnology. Shu, Q. Y., Forster, B. P. & Nakagawa, H. (eds.). Cambridge, Mass.: CAB International, p. 327-346 20 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  191. Protected raspberry production alters aphid-plant interactions but not aphid population size

    Johnson, S. N., Young, M. W. & Karley, A. J. 2012 In : Agricultural and Forest Entomology. 14, 2, p. 217-224 8 p.

    Research output: Contribution to journalArticle

  192. Soil fungal community composition does not alter along a latitudinal gradient through the maritime and sub-Antarctic

    Dennis, P. G., Rushton, S. P., Newsham, K. K., Laudicina, V. A., Ord, V. J., Daniell, T. J., O'Donnell, A. G. & Hopkins, D. W. 2012 In : Fungal Ecology. 5, 6, p. 759-759 1 p.

    Research output: Contribution to journalArticle

  193. The application of LTR retrotransposons as molecular markers in plants

    Schulman, A. H., Flavell, A. J., Paux, E. & Ellis, T. H. N. 2012 Mobile genetic elements: protocols and genomic applications. Walker, J. M. & Bigot, Y. (eds.). 2nd ed. New York: Humana Press, p. 115-153 39 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

  194. The effect of a dominant phytophthora infestans genotype (13_A2) in Great Britain on host resistance to foliar late blight in commercial potato cultivars

    Lees, A. K., Stewart, J. A., Lynott, J. S., Carnegie, S. F., Campbell, H. & Roberts, A. M. I. 2012 In : Potato Research. 55, 2, p. 125-134 10 p.

    Research output: Contribution to journalArticle

  195. Tibet is one of the centers of domestication of cultivated barley

    Dai, F., Nevo, E., Wu, D., Comadran, J., Zhou, M., Qiu, L., Chen, Z., Beiles, A., Chen, G. & Zhang, G. 2012 In : Proceedings of the National Academy of Sciences of the United States of America. 109, 42, p. 16969-16973 5 p.

    Research output: Contribution to journalArticle

  196. Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis

    Marquez, Y., Brown, J. W. S., Simpson, C., Barta, A. & Kalyna, M. 2012 In : Genome Research. 22, 6, p. 1184-1195 12 p.

    Research output: Contribution to journalArticle

  197. What are the implications of variation in root hair length on tolerance to phosphorus deficiency in combination with water stress in barley (Hordeum vulgare)?

    Brown, L. K., George, T. S., Thompson, J. A., Wright, G., Lyon, J., Dupuy, L., Hubbard, S. F. & White, P. J. 2012 In : Annals of Botany. 110, 2, p. 319-328 10 p.

    Research output: Contribution to journalArticle

  198. Phytophthora infestans effector AVRblb2 prevents secretion of a plant immune protease at the haustorial interface

    Bozkurt, T. O., Schornack, S., Win, J., Shindo, T., Ilyas, M., Oliva, R., Cano, L. M., Jones, A. M. E., Huitema, E., van der Hoorn, R. A. L. & Kamoun, S. 20 Dec 2011 In : Proceedings of the National Academy of Sciences of the United States of America. 108, 51, p. 20832-20837 6 p.

    Research output: Contribution to journalArticle

  199. The ankyrin repeats and DHHC S-acyl transferase domain of AKR1 act independently to regulate switching from vegetative to mating states in yeast

    Hemsley, P. A. & Grierson, C. S. 8 Dec 2011 In : PLoS ONE. 6, 12, e28799

    Research output: Contribution to journalArticle

  200. Exploiting Knowledge of Pathogen Effectors to Enhance Late Blight Resistance in Potato

    Whisson, S. C., Avrova, A. O., Boevink, P. C., Armstrong, M. R., Seman, Z. A., Hein, I. & Birch, P. R. J. Dec 2011 In : Potato Research. 54, 4, p. 325-340 16 p.

    Research output: Contribution to journalArticle

  201. Paternal leakage of mitochondrial DNA in experimental crosses of populations of the potato cyst nematode Globodera pallida

    Hoolahan, A. H., Blok, V. C., Gibson, T. & Dowton, M. Dec 2011 In : Genetica. 139, 11-12, p. 1509-1519 11 p.

    Research output: Contribution to journalArticle

  202. Syringyl lignin is unaltered by severe sinapyl alcohol dehydrogenase suppression in tobacco

    Barakate, A., Stephens, J., Goldie, A., Hunter, W. N., Marshall, D., Hancock, R. D., Lapierre, C., Morreele, K., Boerjane, W. & Halpin, C. Dec 2011 In : Plant Cell. 23, 12, p. 4492-4506 15 p.

    Research output: Contribution to journalArticle

  203. Two RNA-binding sites in plant fibrillarin provide interactions with various RNA substrates

    Rakitina, D. V., Taliansky, M., Brown, J. W. S. & Kalinina, N. O. Nov 2011 In : Nucleic Acids Research. 39, 20, p. 8869-8880

    Research output: Contribution to journalArticle

  204. Automated motion estimation of root responses to sucrose in two Arabidopsis thaliana genotypes using confocal microscopy

    Wuyts, N., Bengough, A. G., Roberts, T. J., Du, C., Bransby, M. F., McKenna, S. J. & Valentine, T. A. Oct 2011 In : Planta. 234, 4, p. 769-784 16 p.

    Research output: Contribution to journalArticle

  205. Transcriptome sequencing of an ecologically important graminivorous sawfly: a resource for marker development

    Cook, N., Aziz, N., Hedley, P. E., Morris, J., Milne, L., Karley, A. J., Hubbard, S. F. & Russell, J. R. Oct 2011 In : Conservation Genetics Resources. 3, 4, p. 789-795 7 p.

    Research output: Contribution to journalScientific review

  206. A role for Snf2-related nucleosome-spacing enzymes in genome-wide nucleosome organization

    Gkikopoulos, T., Schofield, P., Singh, V., Pinskaya, M., Mellor, J., Smolle, M., Workman, J. L., Barton, G. J. & Owen-Hughes, T. 23 Sep 2011 In : Science. 333, 6050, p. 1758-1760 3 p.

    Research output: Contribution to journalArticle

  207. Locus-dependent selection in crop-wild hybrids of lettuce under field conditions and its implication for GM crop development

    Hooftman, D. A. P., Flavell, A. J., Jansen, H., den Nijs, H. C. M., Syed, N. H., Sorensen, A. P., Orozco-ter Wengel, P. & van de Wiel, C. C. M. Sep 2011 In : Evolutionary Applications. 4, 5, p. 648-659 12 p.

    Research output: Contribution to journalArticle

  208. Crops that feed the world 4. Barley: a resilient crop?: Strengths and weaknesses in the context of food security

    Newton, A. C., Flavell, A. J., George, T. S., Leat, P., Mullholland, B., Ramsay, L., Revoredo-Giha, C., Russell, J., Steffenson, B. J., Swanston, J. S., Thomas, W. T. B., Waugh, R., White, P. J. & Bingham, I. J. Jun 2011 In : Food Security. 3, 2, p. 141-178 38 p.

    Research output: Contribution to journalArticle

  209. The SWI/SNF complex acts to constrain distribution of the centromeric histone variant Cse4

    Gkikopoulos, T., Singh, V., Tsui, K., Awad, S., Renshaw, M. J., Scholfield, P., Barton, G. J., Nislow, C., Tanaka, T. U. & Owen-Hughes, T. 18 May 2011 In : EMBO Journal. 30, 10, p. 1919-1927 9 p.

    Research output: Contribution to journalArticle

  210. Interventions for preventing oral mucositis for patients with cancer receiving treatment

    Worthington, H., Clarkson, J. E., Bryan, G., Furness, S., Glenny, A. M., Littlewood, A., McCabe, M. G., Meyer, S. & Khalid, T. 13 Apr 2011 In : Cochrane Database of Systematic Reviews. 2011, 4, 276 p.CD000978

    Research output: Contribution to journalScientific review

  211. Analysis of plant diversity with retrotransposon-based molecular markers

    Kalendar, R., Flavell, A. J., Ellis, T. H. N., Sjakste, T., Moisy, C. & Schulman, A. H. Apr 2011 In : Heredity. 106, 4, p. 520-530 11 p.

    Research output: Contribution to journalScientific review

  212. Phylogeny, phylogeography and genetic diversity of the Pisum genus

    Smykal, P., Kenicer, G., Flavell, A. J., Corander, J., Kosterin, O., Redden, R. J., Ford, R., Coyne, C. J., Maxted, N., Ambrose, M. J. & Ellis, N. T. H. Apr 2011 In : Plant Genetic Resources - Characterization and Utilization. 9, 1, p. 418 15 p.

    Research output: Contribution to journalArticle

  213. Genetic diversity among Spanish pea (Pisum sativum L.) landraces, pea cultivars and the World Pisum sp core collection assessed by retrotransposon-based insertion polymorphisms (RBIPs)

    Martin-Sanz, A., Caminero, C., Jing, R., Flavell, A. J. & Perez de la Vega, M. Mar 2011 In : Spanish Journal of Agricultural Research. 9, 1, p. 166-178 13 p.

    Research output: Contribution to journalArticle

  214. INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1

    Ramsay, L., Comadran, J., Druka, A., Marshall, D. F., Thomas, W. T. B., Macaulay, M., MacKenzie, K., Simpson, C., Fuller, J., Bonar, N., Hayes, P. M., Lundqvist, U., Franckowiak, J. D., Close, T. J., Muehlbauer, G. J. & Waugh, R. Feb 2011 In : Nature Genetics. 43, 2, p. 169-172 4 p.

    Research output: Contribution to journalLetter

  215. Root elongation, water stress, and mechanical impedance: a review of limiting stresses and beneficial root tip traits

    Bengough, A. G., McKenzie, B. M., Hallett, P. D. & Valentine, T. A. Jan 2011 In : Journal of Experimental Botany. 62, 1, p. 59-68 10 p.

    Research output: Contribution to journalScientific review

  216. ADS1 encodes a MATE-transporter that negatively regulates plant disease resistance

    Sun, X., Gilroy, E. M., Chini, A., Nurmberg, P. L., Hein, I., Lacomme, C., Birch, P. R. J., Hussain, A., Yun, B-W. & Loake, G. J. 2011 In : New Phytologist. 192, 2, p. 471-482 12 p.

    Research output: Contribution to journalArticle

  217. Analysis of > 1000 single nucleotide polymorphisms in geographically matched samples of landrace and wild barley indicates secondary contact and chromosome-level differences in diversity around domestication genes

    Russell, J., Dawson, I. K., Flavell, A. J., Steffenson, B., Weltzien, E., Booth, A., Ceccarelli, S., Grando, S. & Waugh, R. 2011 In : New Phytologist. 191, 2, p. 564-578 15 p.

    Research output: Contribution to journalArticle

  218. CMPG1-dependent cell death follows perception of diverse pathogen elicitors at the host plasma membrane and is suppressed by Phytophthora infestans RXLR effector AVR3a

    Gilroy, E. M., Taylor, R. M., Hein, I., Boevink, P., Sadanandom, A. & Birch, P. R. J. 2011 In : New Phytologist. 190, 3, p. 653-666 14 p.

    Research output: Contribution to journalArticle

  219. Imaging fluorescently tagged Phytophthora effector proteins inside infected plant tissue

    Boevink, P. C., Birch, P. R. & Whisson, S. C. 2011 Plant immunity: methods and protocols. McDowell, J. D. (ed.). New York: Humana Press, p. 195-209 15 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

  220. Legume genetic resources: management, diversity assessment, and utilization in crop improvement

    Upadhyaya, H. D., Dwivedi, S. L., Ambrose, M., Ellis, N., Berger, J., Smykal, P., Debouck, D., Duc, G., Dumet, D., Flavell, A., Sharma, S. K., Mallikarjuna, N. & Gowda, C. L. L. 2011 In : Euphytica. 180, 1, p. 27-47 21 p.

    Research output: Contribution to journalArticle

  221. Presence/absence, differential expression and sequence polymorphisms between PiAVR2 and PiAVR2-like in Phytophthora infestans determine virulence on R2 plants

    Gilroy, E. M. , Breen, S. , Whisson, S. C. , Squires, J. , Hein, I. , Kaczmarek, M. , Turnbull, D. , Boevink, P. C. , Lokossou, A. , Cano, L. M. , Morales, J. , Avrova, A. O. , Pritchard, L. , Randall, E. , Lees, A. , Govers, F. , van West, P. , Kamoun, S. , Vleeshouwers, V. G. A. A. , Cooke, D. E. L. & 1 others Birch, P. R. J. 2011 In : New Phytologist. 191, 3, p. 763-776 14 p.

    Research output: Contribution to journalArticle

  222. Flapjack-graphical genotype visualization

    Milne, I., Shaw, P., Stephen, G., Bayer, M., Cardle, L., Thomas, W. T. B., Flavell, A. J. & Marshall, D. 15 Dec 2010 In : Bioinformatics. 26, 24, p. 3133-3134 2 p.

    Research output: Contribution to journalArticle

  223. Centrifuge modelling of soil slopes reinforced with vegetation

    Sonnenberg, R., Bransby, M. F., Hallett, P. D., Bengough, A. G., Mickovski, S. B. & Davies, M. C. R. Dec 2010 In : Canadian Geotechnical Journal. 47, 12, p. 1415-1430 16 p.

    Research output: Contribution to journalArticle

  224. A functional genomics approach identifies candidate effectors from the aphid species Myzus persicae (green peach aphid)

    Bos, J. I. B., Prince, D., Pitino, M., Maffei, M. E., Win, J. & Hogenhout, S. A. 18 Nov 2010 In : PLoS Genetics. 6, 11, e1001216

    Research output: Contribution to journalArticle

  225. Noncanonical Translation Initiation of the Arabidopsis Flowering Time and Alternative Polyadenylation Regulator FCA

    Simpson, G. G., Laurie, R. E., Dijkwel, P. P., Quesada, V., Stockwell, P. A., Dean, C. & Macknight, R. C. Nov 2010 In : Plant Cell. 22, 11, p. 3764-3777 14 p.

    Research output: Contribution to journalArticle

  226. Whole-genome association mapping in elite inbred crop varieties

    Waugh, R., Marshall, D., Thomas, B., Comadran, J., Russell, J., Close, T., Stein, N., Hayes, P., Muehlbauer, G., Cockram, J., O'Sullivan, D., MacKay, I., Flavell, A., Ramsay, L. & AGOUEB, BarleyCAP Nov 2010 In : Genome Biology. 53, 11, p. 967-972 6 p.

    Research output: Contribution to journalArticle

  227. Automated saccharification assay for determination of digestibility in plant materials

    Gomez, L. D., Whitehead, C., Barakate, A., Halpin, C. & McQueen-Mason, S. J. 27 Oct 2010 In : Biotechnology for Biofuels. 3, 12 p.23

    Research output: Contribution to journalArticle

  228. Ancient class of translocated oomycete effectors targets the host nucleus

    Schornack, S., van Damme, M., Bozkurt, T. O., Cano, L. M., Smoker, M., Thines, M., Gaulin, E., Kamoun, S. & Huitema, E. 5 Oct 2010 In : Proceedings of the National Academy of Sciences of the United States of America. 107, 40, p. 17421-17426 6 p.

    Research output: Contribution to journalArticle

  229. Estimating the motion of plant root cells from in vivo confocal laser scanning microscopy images

    Roberts, T. J., McKenna, S. J., Du, C-J., Wuyts, N., Valentine, T. A. & Bengough, A. G. Oct 2010 In : Machine Vision and Applications. 21, 6, p. 921-939 19 p.

    Research output: Contribution to journalArticle

  230. Alternative polyadenylation of antisense RNAs and flowering time control

    Hornyik, C., Duc, C., Rataj, K., Terzi, L. C. & Simpson, G. G. Aug 2010 In : Biochemical Society Transactions. 38, p. 1077-1081 5 p.

    Research output: Contribution to journalArticle

  231. Insect endosymbionts: manipulators of insect herbivore trophic interactions?

    Clark, E. L., Karley, A. J. & Hubbard, S. F. Aug 2010 In : Protoplasma. 244, 1-4, p. 25-51 27 p.

    Research output: Contribution to journalScientific review

  232. Recent developments in effector biology of filamentous plant pathogens (vol 12, pg 705, 2010)

    Oliva, R., Win, J., Raffaele, S., Boutemy, L., Bozkurt, T. O., Chaparro-Garcia, A., Segretin, M. E., Stam, R., Schornack, S., Cano, L. M., van Damme, M., Huitema, E., Thines, M., Banfield, M. J. & Kamoun, S. Jul 2010 In : Cellular Microbiology. 12, 7, p. 1015-1015 1 p.

    Research output: Contribution to journalArticle

  233. The twin arginine protein transport pathway exports multiple virulence proteins in the plant pathogen Streptomyces scabies

    Joshi, M. V., Mann, S. G., Antelmann, H., Widdick, D. A., Fyans, J. K., Chandra, G., Hutchings, M. I., Toth, I., Hecker, M., Loria, R. & Palmer, T. Jul 2010 In : Molecular Microbiology. 77, 1, p. 252-271 20 p.

    Research output: Contribution to journalArticle

  234. Below-ground herbivory and root toughness: a potential model system using lignin-modified tobacco

    Johnson, S. N., Hallett, P. D., Gillespie, T. L. & Halpin, C. Jun 2010 In : Physiological Entomology. 35, 2, p. 186-191 6 p.

    Research output: Contribution to journalArticle

  235. Combining plant resistance and a natural enemy to control Amphorophora idaei

    Mitchell, C., Johnson, S. N., Gordon, S. C., Birch, A. N. E. & Hubbard, S. F. Jun 2010 In : BioControl. 55, 3, p. 321-327 7 p.

    Research output: Contribution to journalArticle

  236. Recent developments in effector biology of filamentous plant pathogens

    Oliva, R., Win, J., Raffaele, S., Boutemy, L., Bozkurt, T. O., Chaparro-Garcia, A., Segretin, M. E., Stam, R., Schornack, S., Cano, L. M., van Damme, M., Huitema, E., Thines, M., Banfield, M. J. & Kamoun, S. Jun 2010 In : Cellular Microbiology. 12, 6, p. 705-715 11 p.

    Research output: Contribution to journalScientific review

  237. Phytophthora infestans effector AVR3a is essential for virulence and manipulates plant immunity by stabilizing host E3 ligase CMPG1

    Bos, J., Armstrong, M. R., Gilroy, E. M., Boevink, P. C., Hein, I., Taylor, R. M., Zhendong, T., Engelhardt, S., Vetukuri, R. R., Harrower, B., Dixelius, C., Bryan, G., Sadanandom, A., Whisson, S. C., Kamoun, S. & Birch, P. R. J. 25 May 2010 In : Proceedings of the National Academy of Sciences of the United States of America. 107, 21, p. 9909-9914 6 p.

    Research output: Contribution to journalArticle

  238. Root growth models: Towards a new generation of continuous approaches

    Dupuy, L., Gregory, P. J. & Bengough, A. G. 1 May 2010 In : Journal of Experimental Botany. 61, 8, p. 2131-2143 13 p.

    Research output: Contribution to journalArticle

  239. Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype data

    Moragues , M., Comadran, J., Waugh, R., Milne, I., Flavell, A. J. & Russell, J. R. May 2010 In : Theoretical and Applied Genetics. 120, 8, p. 1525-1534 10 p.

    Research output: Contribution to journalArticle

  240. Plant U13 orthologues and orphan snoRNAs identified by RNomics of RNA from Arabidopsis nucleoli

    Kim, S. H., Spensley, M., Choi, S. K., Calixto, C. P. G., Pendle, A. F., Koroleva, O., Shaw, P. J. & Brown, J. W. S. May 2010 In : Nucleic Acids Research. 38, 9, p. 3054-3067 14 p.

    Research output: Contribution to journalArticle

  241. Regulation of plant gene expression by alternative splicing

    Simpson, C. G., Manthri, S., Raczynska, K. D., Kalyna, M., Lewandowska, D., Kusenda, B., Maronova, M., Szweykowska-Kulinska, Z., Jarmolowski, A., Barta, A. & Brown, J. W. S. Apr 2010 In : Biochemical Society Transactions. 38, 2, p. 667-671 5 p.

    Research output: Contribution to journalArticle

  242. Protein localization and dynamics within a bacterial organelle

    Hughes, H. V., Huitema, E., Pritchard, S., Keiler, K. C., Brun, Y. V. & Viollier, P. H. 23 Mar 2010 In : Proceedings of the National Academy of Sciences of the United States of America. 107, 12, p. 5599-5604 6 p.

    Research output: Contribution to journalArticle

  243. Planting density influence on fibrous root reinforcement of soils

    Loades, K. W., Bengough, A. G., Bransby, M. F. & Hallett, P. D. Mar 2010 In : Ecological Engineering. 36, 3, p. 276-284 9 p.

    Research output: Contribution to journalArticle

  244. The Spen Family Protein FPA Controls Alternative Cleavage and Polyadenylation of RNA

    Hornyik, C., Terzi, L. C. & Simpson, G. G. 16 Feb 2010 In : Developmental Cell. 18, 2, p. 203-213 11 p.

    Research output: Contribution to journalArticle

  245. The genetic diversity and evolution of field pea (Pisum) studied by high throughput retrotransposon based insertion polymorphism (RBIP) marker analysis

    Jing, R., Vershinin, A., Grzebyta, J., Shaw, P., Smykal, P., Marshall, D., Ambrose, M. J., Ellis, T. H. N. & Flavell, A. J. 15 Feb 2010 In : BMC Evolutionary Biology. 10, p. - 20 p.44

    Research output: Contribution to journalArticle

  246. Modelling contact spread of infection in host-parasitoid systems: Vertical transmission of pathogens can cause chaos

    Preedy, K. F., Schofield, P. G., Liu, S., Matzavinos, A., Chaplain, M. A. J. & Hubbard, S. F. 7 Feb 2010 In : Journal of Theoretical Biology. 262, 3, p. 441-451 11 p.

    Research output: Contribution to journalArticle

  247. PIV as a Method for Quantifying Root Cell Growth and Particle Displacement in Confocal Images

    Bengough, A. G., Hans, J., Bransby, M. F. & Valentine, T. A. Jan 2010 In : Microscopy Research and Technique. 73, 1, p. 27-36 10 p.

    Research output: Contribution to journalArticle

  248. Resistance of simple plant root systems to uplift loads

    Mickovski, S. B., Bransby, M. F., Bengough, A. G., Davies, M. C. R. & Hallett, P. D. Jan 2010 In : Canadian Geotechnical Journal. 47, 1, p. 78-95 18 p.

    Research output: Contribution to journalArticle

  249. A methyl transferase links the circadian clock to the regulation of alternative splicing

    Sanchez, S. E., Petrillo, E., Beckwith, E. J., Zhang, X., Rugnone, M. L., Hernando, C. E., Cuevas, J. C., Godoy Herz, M. A., Depetris-Chauvin, A., Simpson, C. G., Brown, J. W. S., Cerdán, P. D., Borevitz, J. O., Mas, P., Ceriani, M. F., Kornblihtt, A. R. & Yanovsky, M. J. 2010 In : Nature. 468, 7320, p. 112-116 5 p.

    Research output: Contribution to journalArticle

  250. Centrifuge modelling of root reinforcement of slopes

    Sonnenberg, R., Bransby, M. F., Hallett, P. D., Bengough, A. G. & Davies, M. C. R. 2010 Physical Modelling in Geotechnics: proceedings of the 7th International Conference on Physical Modelling in Geotechnics (ICPMG 2010). Seward, L. (ed.). London: CRC Press, Vol. 2, p. 1137-1142 6 p.

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  251. Comparative Genome Analysis Provides Insights into the Evolution and Adaptation of Pseudomonas syringae pv. aesculi on Aesculus hippocastanum

    Green, S., Studholme, D. J., Laue, B. E., Dorati, F., Lovell, H., Arnold, D., Cottrell, J. E., Bridgett, S., Blaxter, M., Huitema, E., Thwaites, R., Sharp, P. M., Jackson, R. W. & Kamoun, S. 2010 In : PLoS ONE. 5, 4, p. - 14 p.e10224

    Research output: Contribution to journalArticle

  252. Genome Sequence of Pantoea ananatis LMG20103, the Causative Agent of Eucalyptus Blight and Dieback

    De Maayer, P., Chan, W. Y., Venter, S. N., Toth, I. K., Birch, P. R. J., Joubert, F. & Coutinho, T. A. 2010 In : Journal of Bacteriology. 192, 11, p. 2936-2937 2 p.

    Research output: Contribution to journalArticle

  253. Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

    Huitema, E. & 47 others Levesque, C. A., Brouwer, H., Cano, L., Hamilton, J. P., Holt, C., Raffaele, S., Robideau, G. P., Thines, M., Win, J., Zerillo, M. M., Beakes, G. W., Boore, J. L., Busam, D., Dumas, B., Ferriera, S., Fuerstenberg, S. I., Gachon, C. M. M., Gaulin, E., Govers, F., Grenville-Briggs, L., Horner, N., Hostetler, J., Jiang, R. H. Y., Johnson, J., Krajaejun, T., Lin, H., Meijer, H. J. G., Moore, B., Morris, P., Phuntmart, V., Puiu, D., Shetty, J., Stajich, J. E., Tripathy, S., Wawra, S., van West, P., Whitty, B. R., Coutinho, P. M., Henrissat, B., Martin, F., Thomas, P. D., Tyler, B. M., De Vries, R. P., Kamoun, S., Yandell, M., Tisserat, N. & Buell, C. R. 2010 In : Genome Biology. 11, 7, p. - 22 p.R73

    Research output: Contribution to journalArticle

  254. Geomicrobiology of Eukaryotic Microorganisms

    Gadd, G. M. & Raven, J. A. 2010 In : Geomicrobiology Journal. 27, 6-7, p. 491-519 29 p.

    Research output: Contribution to journalArticle

  255. Introduction

    Gadd, G. M. & Raven, J. A. 2010 In : Geomicrobiology Journal. 27, 6-7, p. 489-490 2 p.

    Research output: Contribution to journalEditorial

  256. Involvement of the nuclear cap-binding protein complex in alternative splicing in Arabidopsis thaliana

    Raczynska, K. D., Simpson, C. G., Ciesiolka, A., Szewc, L., Lewandowska, D., McNicol, J., Szweykowska-Kulinska, Z., Brown, J. W. S. & Jarmolowski, A. 2010 In : Nucleic Acids Research. 38, 1, p. 265-278 14 p.

    Research output: Contribution to journalArticle

  257. Neighbourhood deprivation and the price and availability of fruit and vegetables in Scotland

    Cummins, S., Smith, D. M., Aitken, Z., Dawson, J., Marshall, D., Sparks, L. & Anderson, A. S. 2010 In : Journal of Human Nutrition and Dietetics. 23, 5, p. 494-501 8 p.

    Research output: Contribution to journalArticle

  258. Reverse engineering gene regulatory networks related to quorum sensing in the plant pathogen Pectobacterium atrosepticum.

    Lin, K., Husmeier, D., Dondelinger, F., Mayer, C. D., Liu, H., Pritchard, L., Salmond, G. P. C., Toth, I. K. & Birch, P. R. J. 2010 Computational biology. Fenyo, D. (ed.). New York: Humana Press, p. 253-281 29 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

  259. Stomatal vs. genome size in angiosperms

    Hodgson, J. G. , Sharafi, M. , Jalili, A. , Diaz, S. , Montserrat-Marti, G. , Palmer, C. , Cerabolini, B. , Pierce, S. , Hamzehee, B. , Asri, Y. , Jamzad, Z. , Wilson, P. , Raven, J. A. , Band, S. R. , Basconcelo, S. , Bogard, A. , Carter, G. , Charles, M. , Castro-Diez, P. , Cornelissen, J. H. C. & 22 others Funes, G., Jones, G., Khoshnevis, M., Perez-Harguindeguy, N., Perez-Rontome, M. C., Shirvany, F. A., Vendramini, F., Yazdani, S., Abbas-Azimi, R., Boustani, S., Dehghan, M., Guerrero-Campo, J., Hynd, A., Kowsary, E., Kazemi-Saeed, F., Siavash, B., Villar-Salvador, P., Craigie, R., Naqinezhad, A., Romo-Diez, A., de Torres Espuny, L. & Simmons, E. 2010 In : Annals of Botany. 105, 4, p. 573-584 12 p.

    Research output: Contribution to journalArticle

  260. Towards an understanding on how RxLR-effector proteins are translocated from oomycetes into host cells

    Grouffaud, S., Whisson, S. C., Birch, P. R. J. & West, P. V. 2010 In : Fungal Biology Reviews. 24, 1-2, p. 27-36

    Research output: Contribution to journalScientific review

  261. Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

    Cole, C., Sobala, A., Lu, C., Thatcher, S. R., Bowman, A., Brown, J. W. S., Green, P. J., Barton, G. J. & Hutvagner, G. Dec 2009 In : RNA: a Publication of the RNA Society. 15, 12, p. 2147-2160 14 p.

    Research output: Contribution to journalArticle

  262. Localization of eIF4A-III in the nucleolus and splicing speckles is an indicator of plant stress

    Koroleva, O. A., Brown, J. W. S. & Shaw, P. J. Dec 2009 In : Plant Signaling and Behavior. 4, 12, p. 1148-1151

    Research output: Contribution to journalArticle

  263. Molecular markers for the identification of resistance genes and marker-assisted selection in breeding wheat for leaf rust resistance

    Vida, G., Gal, M., Uhrin, A., Veisz, O., Hasan-Syed, N., Flavell, A. J., Wang, Z. & Bedo, Z. Nov 2009 In : Euphytica. 170, 1-2, p. 67-76 10 p.

    Research output: Contribution to journalArticle

  264. Protein mislocalization in plant cells using a GFP-binding chromobody

    Schornack, S., Fuchs, R., Huitema, E., Rothbauer, U., Lipka, V. & Kamoun, S. Nov 2009 In : Plant Journal. 60, 4, p. 744-754 11 p.

    Research output: Contribution to journalArticle

  265. Ten things to know about oomycete effectors

    Schornack, S., Huitema, E., Cano, L. M., Bozkurt, T. O., Oliva, R., van Damme, M., Schwizer, S., Raffaele, S., Chaparro-Garcia, A., Farrer, R., Segretin, M. E., Bos, J. I. B., Haas, B. J., Zody, M. C., Nusbaum, C., Win, J., Thines, M. & Kamoun, S. Nov 2009 In : Molecular Plant Pathology. 10, 6, p. 795-803 9 p.

    Research output: Contribution to journalScientific review

  266. Variations in fresh fruit and vegetable quality by store type, urban-rural setting and neighbourhood deprivation in Scotland

    Cummins, S., Smith, D. M., Taylor, M., Dawson, J., Marshall, D., Sparks, L. & Anderson, A. S. Nov 2009 In : Public Health Nutrition. 12, 11, p. 2044-2050 7 p.

    Research output: Contribution to journalArticle

  267. Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

    Huitema, E. & 95 others Haas, B. J., Kamoun, S., Zody, M. C., Jiang, R. H. Y., Handsaker, R. E., Cano, L. M., Grabherr, M., Kodira, C. D., Raffaele, S., Torto-Alalibo, T., Bozkurt, T. O., Ah-Fong, A. M. V., Alvarado, L., Anderson, V. L., Armstrong, M. R., Avrova, A., Baxter, L., Beynon, J., Boevink, P. C., Bollmann, S. R., Bos, J. I. B., Bulone, V., Cai, G., Cakir, C., Carrington, J. C., Chawner, M., Conti, L., Costanzo, S., Ewan, R., Fahlgren, N., Fischbach, M. A., Fugelstad, J., Gilroy, E. M., Gnerre, S., Green, P. J., Grenville-Briggs, L. J., Griffith, J., Gruenwald, N. J., Horn, K., Horner, N. R., Hu, C-H., Jeong, D-H., Jones, A. M. E., Jones, J. D. G., Jones, R. W., Karlsson, E. K., Kunjeti, S. G., Lamour, K., Liu, Z., Ma, L., MacLean, D., Chibucos, M. C., McDonald, H., McWalters, J., Meijer, H. J. G., Morgan, W., Morris, P. F., Munro, C. A., O'Neill, K., Ospina-Giraldo, M., Pinzon, A., Pritchard, L., Ramsahoye, B., Ren, Q., Restrepo, S., Roy, S., Sadanandom, A., Savidor, A., Schornack, S., Schwartz, D. C., Schumann, U. D., Schwessinger, B., Seyer, L., Sharpe, T., Silvar, C., Song, J., Studholme, D. J., Sykes, S., Thines, M., van de Vondervoort, P. J. I., Phuntumart, V., Wawra, S., Weide, R., Win, J., Young, C., Zhou, S., Fry, W., Meyers, B. C., van West, P., Ristaino, J., Govers, F., Birch, P. R. J., Whisson, S. C., Judelson, H. S. & Nusbaum, C. 17 Sep 2009 In : Nature. 461, 7262, p. 393-398 6 p.

    Research output: Contribution to journalArticle

  268. Quantitative image analysis of earthworm-mediated soil displacement

    Barnett, C. M., Bengough, A. G. & McKenzie, B. M. Sep 2009 In : Biology and Fertility of Soils. 45, 8, p. 821-828 8 p.

    Research output: Contribution to journalArticle

  269. Microarray Comparative Genomic Hybridisation Analysis Incorporating Genomic Organisation, and Application to Enterobacterial Plant Pathogens

    Pritchard, L., Liu, H., Booth, C., Douglas, E., Francois, P., Schrenzel, J., Hedley, P. E., Birch, P. R. J. & Toth, I. K. Aug 2009 In : PLoS Computational Biology. 5, 8, p. - 17 p.e1000473

    Research output: Contribution to journalArticle

  270. Aberrant mRNA Transcripts and the Nonsense-Mediated Decay Proteins UPF2 and UPF3 Are Enriched in the Arabidopsis Nucleolus

    Kim, S. H., Koroleva, O. A., Lewandowska, D., Pendle, A. F., Clark, G. P., Simpson, C. G., Shaw, P. J. & Brown, J. W. S. Jul 2009 In : Plant Cell. 21, 7, p. 2045-2057 13 p.

    Research output: Contribution to journalArticle

  271. Arabidopsis RNA immunoprecipitation

    Terzi, L. C. & Simpson, G. G. Jul 2009 In : Plant Journal. 59, 1, p. 163-168 6 p.

    Research output: Contribution to journalArticle

  272. The zig-zag-zig in oomycete-plant interactions

    Hein, I., Gilroy, E. M., Armstrong, M. R. & Birch, P. R. J. Jul 2009 In : Molecular Plant Pathology. 10, 4, p. 547-562 16 p.

    Research output: Contribution to journalScientific review

  273. Characterisation of a novel NR4A2 mutation in Parkinson's disease brain

    Sleiman, P. M. A., Healy, D. G., Muqit, M. M. K., Yang, Y. X., Van der Brug, M., Holton, J. L., Revesz, T., Quinn, N. P., Bhatia, K., Diss, J. K. J., Lees, A. J., Cookson, M. R., Latchman, D. S. & Wood, N. W. 26 Jun 2009 In : Neuroscience Letters. 457, 2, p. 75-79 5 p.

    Research output: Contribution to journalArticle

  274. Deep rooting and drought screening of cereal crops: a novel field-based method and its application

    McKenzie, B. M., Bengough, A. G., Hallett, P. D., Thomas, W. T. B., Forster, B. & McNicol, J. W. 26 Jun 2009 In : Field Crops Research. 112, 2-3, p. 165-171 7 p.

    Research output: Contribution to journalScientific review

  275. Centrifuge modelling of climatic effects on clay embankments

    Hudacsek, P., Bransby, M. F., Hallett, P. D. & Bengough, G. Jun 2009 In : Proceedings of the Institution of Civil Engineers-Engineering Sustainability. 162, 2, p. 91-100 10 p.

    Research output: Contribution to journalArticle

  276. Exploiting Knowledge of R/Avr Genes to Rapidly Clone a New LZ-NBS-LRR Family of Late Blight Resistance Genes from Potato Linkage Group IV

    Lokossou, A. A., Park, T., van Arkel, G., Arens, M., Ruyter-Spira, C., Morales, J., Whisson, S. C., Birch, P. R. J., Visser, R. G. F., Jacobsen, E. & van der Vossen, E. A. G. Jun 2009 In : Molecular Plant - Microbe Interactions. 22, 6, p. 630-641 12 p.

    Research output: Contribution to journalArticle

  277. Using molecular phylogeny to investigate the bacteria associated with the cabbage aphid (Brevicoryne brassicae)

    Clark, E. L., Karley, A. J., Wishart, J., Daniell, T. J. & Hubbard, S. F. Jun 2009 In : Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. 153, 2; Suppl., p. S47-S47 1 p.CSS.17

    Research output: Contribution to journalBook/Film/Article review

  278. Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L.

    Kiaer, L. P., Felber, F., Flavell, A., Guadagnuolo, R., Guiatti, D., Hauser, T. P., Olivieri, A. M., Scotti, I., Syed, N., Vischi, M., van de Wiel, C. & Jorgensen, R. B. May 2009 In : Genetic Resources and Crop Evolution. 56, 3, p. 405-419 15 p.

    Research output: Contribution to journalArticle

  279. Reply: A unified classification system for eukaryotic transposable elements should reflect their phylogeny

    Wicker, T., Sabot, F., Hua-Van, A., Bennetzen, J. L., Capy, P., Chalhoub, B., Flavell, A., Leroy, P., Morgante, M., Panaud, O., Paux, E., SanMiguel, P. & Schulman, A. H. Apr 2009 In : Nature Reviews Genetics. 10, 4, p. 276 1 p.

    Research output: Contribution to journalLetter

  280. Measuring root traits in barley (Hordeum vulgare ssp. vulgare and ssp. spontaneum) seedlings using gel chambers, soil sacs and X-ray microtomography

    Hargreaves, C. E., Gregory, P. J. & Bengough, A. G. Mar 2009 In : Plant and Soil. 316, 1-2, p. 285-297 13 p.

    Research output: Contribution to journalArticle

  281. Towards understanding the virulence functions of RXLR effectors of the oomycete plant pathogen Phytophthora infestans

    Birch, P. R. J., Armstrong, M., Bos, J., Boevink, P., Gilroy, E. M., Taylor, R. M., Wawra, S., Pritchard, L., Conti, L., Ewan, R., Whisson, S. C., van West, P., Sadanandom, A. & Kamoun, S. Mar 2009 In : Journal of Experimental Botany. 60, 4, p. 1133-1140 8 p.

    Research output: Contribution to journalScientific review

  282. Cumulative impact of GM herbicide-tolerant cropping on arable plants assessed through species-based and functional taxonomies

    Squire, G. R., Hawes, C., Begg, G. S. & Young, M. W. Jan 2009 In : Environmental Science and Pollution Research International. 16, 1, p. 85-94 10 p.

    Research output: Contribution to journalArticle

  283. Disentangling the impact of AM fungi versus roots on soil structure and water transport

    Hallett, P. D., Feeney, D. S., Bengough, A. G., Rillig, M. C., Scrimgeour, C. M. & Young, I. M. Jan 2009 In : Plant and Soil. 314, 1-2, p. 183-196 14 p.

    Research output: Contribution to journalArticle

  284. The development of a PCR-based marker linked to resistance to the blackcurrant gall mite (Cecidophyopsis ribis Acari Eriophyidae)

    Brennan, R., Jorgensen, L., Gordon, S., Loades, K., Hackett, C. & Russell, J. Jan 2009 In : Theoretical and Applied Genetics. 118, 2, p. 205-211 7 p.

    Research output: Contribution to journalArticle

  285. Dynamic behavior of Arabidopsis eIF4A-III, putative core protein of exon junction complex: fast relocation to nucleolus and splicing speckles under hypoxia

    Koroleva, O. A., Calder, G., Pendle, A. F., Kim, S. H., Lewandowska, D., Simpson, C. G., Jones, I. M., Brown, J. W. S. & Shaw, P. J. 2009 In : Plant Cell. 21, 5, p. 1592-1606 15 p.

    Research output: Contribution to journalArticle

  286. Functional redundancy in the Arabidopsis Cathepsin B gene family contributes to basal defence, the hypersensitive response and senescence

    McLellan, H., Gilroy, E. M., Yun, B-W., Birch, P. R. J. & Loake, G. J. 2009 In : New Phytologist. 183, 2, p. 408-418 11 p.

    Research output: Contribution to journalArticle

  287. Mechanical reinforcement of soil by willow roots: impacts of root properties and root failure mechanism

    Mickovski, S. B., Hallett, P. D., Bransby, M. F., Davies, M. C. R., Sonnenberg, R. & Bengough, A. G. 2009 In : Soil Science Society of America Journal. 73, 4, p. 1276-1285 10 p.

    Research output: Contribution to journalArticle

  288. Progress in mapping and cloning qualitative and quantitative resistance against Phytophthora infestans in potato and its wild relatives

    Hein, I., Birch, P. R. J., Danan, S., Lefebvre, V., Odeny, D. A., Gebhardt, C., Trognitz, F. & Bryan, G. J. 2009 In : Potato Research. 52, 3, p. 215-227

    Research output: Contribution to journalArticle

  289. Protein S-acylation in plants (Review)

    Hemsley, P. A. 2009 In : Molecular Membrane Biology. 26, 1-2, p. 114-125 12 p.

    Research output: Contribution to journalScientific review

  290. Root phenomics of crops: opportunities and challenges

    Gregory, P. J., Bengough, A. G., Grinev, D., Schmidt, S., Thomas, W. . B. T. B., Wojciechowski, T. & Young, I. M. 2009 In : Functional Plant Biology. 36, 11, p. 922-929 8 p.

    Research output: Contribution to journalArticle

  291. TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops

    Milne, I., Lindner, D., Bayer, M., Husmeier, D., McGuire, G., Marshall, D. F. & Wright, F. 2009 In : Bioinformatics. 25, 1, p. 126-127 2 p.

    Research output: Contribution to journalArticle

  292. Plasmodium falciparum and Hyaloperonospora parasitica effector translocation motifs are functional in Phytophthora infestans

    Grouffaud, S., van West, P., Avrova, A. O., Birch, P. R. J. & Whisson, S. C. Dec 2008 In : Microbiology-SGM. 154, 12, p. 3743-3751 9 p.

    Research output: Contribution to journalArticle

  293. Phytochemical diversity in tubers of potato cultivars and landraces using a GC-MS metabolomics approach

    Dobson, G., Shepherd, T., Verrall, S. R., Conner, S., McNicol, J. W., Ramsay, G., Shepherd, L. V. T., Davies, H. V. & Stewart, D. 12 Nov 2008 In : Journal of Agricultural and Food Chemistry. 56, 21, p. 10280-91 12 p.

    Research output: Contribution to journalArticle

  294. A novel Phytophthora infestans haustorium-specific membrane protein is required for infection of potato

    Avrova, A. O., Boevink, P. C., Young, V., Grenville-Briggs, L. J., van West, P., Birch, P. R. J. & Whisson, S. C. Nov 2008 In : Cellular Microbiology. 10, 11, p. 2271-2284 14 p.

    Research output: Contribution to journalArticle

  295. Expression profiling of potato germplasm differentiated in quality traits leads to the identification of candidate flavour and texture genes

    Ducreux, L. J. M., Morris, W. L., Prosser, I. M., Morris, J. A., Beale, M. H., Wright, F., Shepherd, T., Bryan, G. J., Hedley, P. E. & Taylor, M. A. Nov 2008 In : Journal of Experimental Botany. 59, 15, p. 4219-4231 13 p.

    Research output: Contribution to journalArticle

  296. The Phytophthora infestans avirulence gene Avr4 encodes an RXLR-dEER effector

    van Poppel, P. M. J. A., Guo, J., van de Vondervoort, P. J. I., Jung, M. W. M., Birch, P. R. J., Whisson, S. C. & Govers, F. Nov 2008 In : Molecular Plant - Microbe Interactions. 21, 11, p. 1460-1470

    Research output: Contribution to journalArticle

  297. Heterogeneity in the distribution of genetically modified and conventional oilseed rape within fields and seed lots

    Begg, G. S., Elliott, M. J., Cullen, D. W., Iannetta, P. P. M. & Squire, G. R. Oct 2008 In : Transgenic Research. 17, 5, p. 805-816 12 p.

    Research output: Contribution to journalArticle

  298. Isolation, analysis and marker utility of novel miniature inverted repeat transposable elements from the barley genome

    Lyons, M., Cardle, L., Rostoks, N., Waugh, R. & Flavell, A. J. Oct 2008 In : Molecular Genetics and Genomics. 280, 4, p. 275-285 11 p.

    Research output: Contribution to journalArticle

  299. Molecular regulation of somatic embryogenesis in potato: an auxin led perspective

    Sharma, S. K., Millam, S., Hedley, P. E., McNicol, J. & Bryan, G. J. Sep 2008 In : Plant Molecular Biology. 68, 1-2, p. 185-201 17 p.

    Research output: Contribution to journalArticle

  300. Genetic diversity and population structure of pea (Pisum sativum L.) varieties derived from combined retrotransposon, microsatellite and morphological marker analysis

    Smykal, P., Hybl, M., Corander, J., Jarkovsky, J., Flavell, A. J. & Griga, M. Aug 2008 In : Theoretical and Applied Genetics. 117, 3, p. 413-424 12 p.

    Research output: Contribution to journalArticle

  301. Oomycete RXLR effectors: delivery, functional redundancy and durable disease resistance

    Birch, P. R. J., Boevink, P. C., Gilroy, E. M., Hein, I., Pritchard, L. & Whisson, S. C. Aug 2008 In : Current Opinion in Plant Biology. 11, 4, p. 373-379 7 p.

    Research output: Contribution to journalScientific review

  302. Comparison of the calystegine composition and content of potato sprouts and tubers from Solanum tuberosum Group Phureja and Solanum tuberosum Group Tuberosum

    Griffiths, D. W., Shepherd, T. & Stewart, D. 9 Jul 2008 In : Journal of Agricultural and Food Chemistry. 56, 13, p. 5197-5204 8 p.

    Research output: Contribution to journalArticle

  303. Exploiting regulatory variation to identify genes underlying quantitative resistance to the wheat stem rust pathogen Puccinia graminis f. sp. tritici in barley

    Druka, A., Potokina, E., Luo, Z., Bonar, N., Druka, I., Zhang, L., Marshall, D. F., Steffenson, B. J., Close, T. J., Wise, R. P., Kleinhofs, A., Williams, R. W., Kearsey, M. J. & Waugh, R. Jul 2008 In : Theoretical and Applied Genetics. 117, 2, p. 261-272 12 p.

    Research output: Contribution to journalArticle

  304. The potential use of temperate chimeric phages in arthropod vectored disease control

    Butcher, R., Karr, T. L., Hubbard, S. F. & Areekul-Butcher, B. Jul 2008 In : Infection, Genetics and Evolution. 8, 4, p. S30-S31 2 p.62

    Research output: Contribution to journalBook/Film/Article review

  305. Tissue culture propagation alters plant-microbe interactions in tobacco rhizosphere

    Tilston, E. L., Halpin, C. & Hopkins, D. W. Jul 2008 In : Biology and Fertility of Soils. 44, 6, p. 897-901 5 p.

    Research output: Contribution to journalArticle

  306. Translocated oomycete effectors that target the plant immune system

    Birch, P. R. J., Whisson, S., Boevink, P., Armstrong, M., Gilroy, E., Pritchard, L., Grouffaud, S., Sandanandom, A., Taylor, R., Kamoun, S. & Bos, J. Jul 2008 In : Comparative Biochemistry and Physiology Part A: Molecular & Integrative Physiology. 150, 3, p. S176-S177 2 p.

    Research output: Contribution to journalBook/Film/Article review

  307. Multiple roles for protein palmitoylation in plants

    Hemsley, P. A. & Grierson, C. S. Jun 2008 In : Trends in Plant Science. 13, 6, p. 295-302 8 p.

    Research output: Contribution to journalScientific review

  308. Deletion of the TbALG3 gene demonstrates site-specific N-glycosylation and N-glycan processing in Trypanosoma brucei

    Manthri, S., Guther, M. L. S., Izquierdo, L., Acosta-Serrano, A. & Ferguson, M. A. J. May 2008 In : Glycobiology. 18, 5, p. 367-383 17 p.

    Research output: Contribution to journalArticle

  309. The BLADE-ON-PETIOLE genes are essential for abscission zone formation in Arabidopsis

    McKim, S. M., Stenvik, G-E., Butenko, M. A., Kristiansen, W., Cho, S. K., Hepworth, S. R., Aalen, R. B. & Haughn, G. W. 15 Apr 2008 In : Development. 135, 8, p. 1537-1546

    Research output: Contribution to journalArticle

  310. Cellulose synthesis in Phytophthora infestans is required for normal appressorium formation and successful infection of potato

    Grenville-Briggs, L. J., Anderson, V. L., Fugelstad, J., Avrova, A. O., Bouzenzana, J., Williams, A., Wawra, S., Whisson, S. C., Birch, P. R. J., Bulone, V. & van West, P. Mar 2008 In : Plant Cell. 20, 3, p. 720-738 19 p.

    Research output: Contribution to journalArticle

  311. Monitoring changes in alternative precursor messenger RNA splicing in multiple gene transcripts

    Simpson, C. G., Fuller, J., Maronova, M., Kalyna, M., Davidson, D., McNicol, J., Barta, A. & Brown, J. W. S. Mar 2008 In : Plant Journal. 53, 6, p. 1035-1048 14 p.

    Research output: Contribution to journalArticle

  312. Not drowning but photosynthesizing: probing plant plastrons

    Raven, J. A. Mar 2008 In : New Phytologist. 177, 4, p. 841-845 5 p.

    Research output: Contribution to journalArticle

  313. Parasitism genes and host range disparities in biotrophic nematodes: the conundrum of polyphagy versus specialisation

    Blok, V. C., Jones, J. T., Phillips, M. S. & Trudgill, D. Mar 2008 In : BioEssays. 30, 3, p. 249-59 11 p.

    Research output: Contribution to journalArticle

  314. A plant virus movement protein forms ringlike complexes with the major nucleolar protein, fibrillarin, in vitro

    Canetta, E., Kim, S. H., Kalinina, N. O., Shaw, J., Adya, A. K., Gillespie, T., Brown, J. W. S. & Taliansky, M. 29 Feb 2008 In : Journal of Molecular Biology. 376, 4, p. 932-937 6 p.

    Research output: Contribution to journalArticle

  315. Characterisation of flow paths and saturated conductivity in a soil block in relation to chloride breakthrough

    Deeks, L. K., Bengough, A. G., Stutter, M. I., Young, I. M. & Zhang, X. X. 15 Jan 2008 In : Journal of Hydrology. 348, 3-4, p. 431-441 11 p.

    Research output: Contribution to journalArticle

  316. QTL mapping of yield, agronomic and quality traits in tetraploid potato (Solanum tuberosum subsp. tuberosum)

    Bradshaw, J. E., Hackett, C. A., Pande, B., Waugh, R. & Bryan, G. J. Jan 2008 In : Theoretical and Applied Genetics. 116, 2, p. 193-211 19 p.

    Research output: Contribution to journalArticle

  317. Alternative splicing in plants

    Simpson, C. G., Lewandowska, D., Fuller, J., Maronova, M., Kalyna, M., Davidson, D., McNicol, J., Raczynska, D., Jarmolowski, A., Barta, A. & Brown, J. W. S. 2008 In : Biochemical Society Transactions. 36, 3, p. 508-10 3 p.

    Research output: Contribution to journalArticle

  318. Assaying protein palmitoylation in plants

    Hemsley, P. A., Taylor, L. & Grierson, C. S. 2008 In : Plant Methods. 4, 2

    Research output: Contribution to journalArticle

  319. Black tea polyphenols mimic insulin/insulin-like growth factor-1 signalling to the longevity factor FOXO1a

    Cameron, A. R., Anton, S., Melville, L., Houston, N. P., Dayal, S., McDougall, G. J., Stewart, D. & Rena, G. 2008 In : Aging Cell. 7, 1, p. 69-77 9 p.

    Research output: Contribution to journalArticle

  320. Current developments on the inhibitory effects of berry polyphenols on digestive enzymes

    McDougall, G. J., Kulkarni, N. N. & Stewart, D. 2008 In : BioFactors. 34, 1, p. 73-80 8 p.

    Research output: Contribution to journalArticle

  321. Genomic resources and tools for gene function analysis in potato

    Bryan, G. J. & Hein, I. 2008 In : International Journal of Plant Genomics. 2008, 9 p.216513

    Research output: Contribution to journalArticle

  322. High diversity of arbuscular mycorrhizal fungi in a boreal herb-rich coniferous forest

    Opik, M., Moora, M., Zobel, M., Saks, U., Wheatley, R., Wright, F. & Daniell, T. 2008 In : New Phytologist. 179, 3, p. 867-876 10 p.

    Research output: Contribution to journalArticle

  323. Identification of small compounds that mimic insulin action on the transcription factor FOXO1a

    Cameron, A., Anton, S., Reetoo, N., Melville, L., Houston, N., Dayal, S., McDougall, G., Stewart, D. & Rena, G. 2008 In : Diabetes. 57, Suppl., p. A699-A700 2 p.

    Research output: Contribution to journalMeeting abstract

  324. Intronic noncoding RNAs and splicing

    Brown, J. W. S., Marshall, D. F. & Echeverria, M. 2008 In : Trends in Plant Science. 13, 7, p. 335-342 8 p.

    Research output: Contribution to journalArticle

  325. Performance evaluation of the cell-based algorithms for domain decomposition in flow simulation

    Wang, J., Zhang, X., Bengough, A. G. & Crawford, J. W. 2008 In : International Journal of Numerical Methods for Heat & Fluid Flow. 18, 5-6, p. 656-672 17 p.

    Research output: Contribution to journalArticle

  326. Quorum sensing coordinates brute force and stealth modes of infection in the plant pathogen Pectobacterium atrosepticum

    Liu, H., Coulthurst, S. J., Pritchard, L., Hedley, P. E., Ravensdale, M., Humphris, S., Burr, T., Takle, G., Brurberg, M-B., Birch, P. R. J., Salmond, G. P. C. & Toth, I. K. 2008 In : PLoS Pathogens. 4, 6, p. - 11 p.e1000093

    Research output: Contribution to journalArticle

  327. Regulation of Flowering Time by RNA Processing

    Terzi, L. C. & Simpson, G. G. 2008 Nuclear Pre-Mrna Processing in Plants. Reddy, A. S. N. & Golovkin, M. (eds.). Berlin: Springer, Vol. 326, p. 201-218 18 p.

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  328. Role of plant virus movement proteins

    Taliansky, M., Torrance, L. & Kalinina, N. O. 2008 Plant virology protocols: from viral sequence to protein function. Foster, G. D., Johansen, I. E., Hong, Y. & Nagy , P. D. (eds.). Humana Press, p. 33-54 22 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

  329. The evolution of inorganic carbon concentrating mechanisms in photosynthesis

    Raven, J. A., Cockell, C. S. & De La Rocha, C. L. 2008 In : Philosophical Transactions of the Royal Society B - Biological Sciences. 363, 1504, p. 2641-2650 10 p.

    Research output: Contribution to journalArticle

  330. The role of the plant nucleolus in pre-mRNA processing

    Brown, J. W. S. & Shaw, P. J. 2008 Nuclear pre-mRNA processing in plants. Reddy, A. S. N. & Golovkin, M. (eds.). Berlin: Springer, p. 291-311 21 p. (Current topics in microbiology and immunology).

    Research output: Chapter in Book/Report/Conference proceedingChapter

  331. Towards systems genetic analyses in barley: Integration of phenotypic, expression and genotype data into GeneNetwork

    Druka, A., Druka, I., Centeno, A. G., Li, H., Sun, Z., Thomas, W. T. B., Bonar, N., Steffenson, B. J., Ullrich, S. E., Kleinhofs, A., Wise, R. P., Close, T. J., Potokina, E., Luo, Z., Wagner, C., Schweizer, G. F., Marshall, D. F., Kearsey, M. J., Williams, R. W. & Waugh, R. 2008 In : BMC Medical Genetics. 9, p. 73

    Research output: Contribution to journalArticle

  332. Transpiration: how many functions?

    Raven, J. A. 2008 In : New Phytologist. 179, 4, p. 905-907 3 p.

    Research output: Contribution to journalArticle

  333. U12-dependent intron splicing in plants

    Simpson, C. G. & Brown, J. W. S. 2008 Nuclear pre-mRNA processing in plants. Reddy, A. S. N. & Golovkin, M. (eds.). Berlin: Springer, p. 61-82 22 p. (Current topics in microbiology and immunology).

    Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

  334. What will a genome sequence do for fire blight research?: Pectobacterium atrosepticum and potato - a case study

    Toth, I. K., Birch, P. R. J., Liu, H., Pritchard, L., Humphris, S., Ravensdale, M., Moleleki, L., Robert, C., Hedley, P. & Gilroy, E. M. 2008 In : Acta Horticulturae. 793, p. 157-162 6 p.

    Research output: Contribution to journalArticle

  335. Yeast two-hybrid assay to identify host-virus interactions

    MacFarlane, S. A. & Uhrig, J. F. 2008 Plant virology protocols: from viral sequence to protein function. Foster , G. D., Johansen, I. E., Hong, Y. & Nagy, P. D. (eds.). Humana Press, p. 649-672 24 p. (Methods in molecular biology).

    Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

  336. A unified classification system for eukaryotic transposable elements

    Wicker, T., Sabot, F., Hua-Van, A., Bennetzen, J. L., Capy, P., Chalhoub, B., Flavell, A., Leroy, P., Morgante, M., Panaud, O., Paux, E., SanMiguel, P. & Schulman, A. H. Dec 2007 In : Nature Reviews Genetics. 8, 12, p. 973-982 10 p.

    Research output: Contribution to journalScientific review

  337. Gene-based sequence diversity analysis of field pea (Pisum)

    Jing, R., Johnson, R., Seres, A., Kiss, G., Ambrose, M. J., Knox, M. R., Ellis, T. H. N. & Flavell, A. J. Dec 2007 In : Genetics. 177, 4, p. 2263-2275 13 p.

    Research output: Contribution to journalArticle

  338. Localization and domain characterization of Arabidopsis golgin candidates

    Latijnhouwers, M., Gillespie, T., Boevink, P., Kriechbaumer, V., Hawes, C. & Carvalho, C. M. Dec 2007 In : Journal of Experimental Botany. 58, 15-16, p. 4373-4386 14 p.

    Research output: Contribution to journalArticle

  339. Material stiffness, branching pattern and soil matric potential affect the pullout resistance of model root systems

    Mickovski, S. B., Bengough, A. G., Bransby, M. F., Davies, M. C. R., Hallett, P. D. & Sonnenberg, R. Dec 2007 In : European Journal of Soil Science. 58, 6, p. 1471-1481 11 p.

    Research output: Contribution to journalArticle

  340. Umami compounds are a determinant of the flavor of potato (Solanum tuberosum L.)

    Morris, W. L., Ross, H. A., Ducreux, L. J. M., Bradshaw, J. E., Bryan, G. J. & Taylor, M. A. 14 Nov 2007 In : Journal of Agricultural and Food Chemistry. 55, 23, p. 9627-9633 7 p.

    Research output: Contribution to journalArticle

  341. A translocation signal for delivery of oomycete effector proteins inside host plant cells

    Whisson, S. C., Boevink, P. C., Moleleki, L., Avrova, A. O., Morales, J. G., Gilroy, E. M., Armstrong, M. R., Grouffaud, S., West, P. V., Chapman, S., Hein, I., Toth, I. K., Pritchard, L. & Birch, P. R. J. Nov 2007 In : Nature. 450, 7166, p. 115-118 4 p.

    Research output: Contribution to journalArticle

  342. Delivery of macromolecules to plant parasitic nematodes using a tobacco rattle virus vector

    Valentine, T. A., Randall, E., Wypijewski, K., Chapman, S., Jones, J. & Oparka, K. J. Nov 2007 In : Plant Biotechnology Journal. 5, 6, p. 827-834 8 p.

    Research output: Contribution to journalArticle

  343. Are there ecological implications for the proposed energetic restrictions on photosynthetic oxygen evolution at high oxygen concentrations?

    Raven, J. A. & Larkum, A. W. D. Oct 2007 In : Photosynthesis Research. 94, 1, p. 31-42 12 p.

    Research output: Contribution to journalArticle

  344. Involvement of cathepsin B in the plant disease resistance hypersensitive response

    Gilroy, E. M., Hein, I., Van Der Hoorn, R., Boevink, P. C., Venter, E., McLellan, H., Kaffarnik, F., Hrubikova, K., Shaw, J., Holeva, M., Lopez, E. C., Borras-Hidalgo, O., Pritchard, L., Loake, G. J., Lacomme, C. & Birch, P. R. J. Oct 2007 In : Plant Journal. 52, 1, p. 1-13 13 p.

    Research output: Contribution to journalArticle

  345. The barley phytomer

    Forster, B. P., Franckowiak, J. D., Lundqvist, U., Lyon, J., Pitkethly, I. & Thomas, W. T. B. Oct 2007 In : Annals of Botany. 100, 4, p. 725-733 9 p.

    Research output: Contribution to journalArticle

  346. Break on through to the other side: outer membrane penetration of the nascent flagellum by a stop-polymerization mechanism

    Huitema, E. & Viollier, P. H. 15 Sep 2007 In : Genes & Development. 21, 18, p. 2253-2257 5 p.

    Research output: Contribution to journalArticle

  347. Symplastic connection is required for bud outgrowth following dormancy in potato (Solanum tuberosum L.) tubers

    Viola, R., Pelloux, J., van der Ploeg, A., Gillespie, T., Marquis, N., Roberts, A. G. & Hancock, R. D. Aug 2007 In : Plant, Cell & Environment. 30, 8, p. 973-83 11 p.

    Research output: Contribution to journalArticle

  348. Extraordinarily high leaf selenium to sulfur ratios define 'Se-accumulator' plants

    White, P. J., Bowen, H. C., Marshall, B. & Broadley, M. R. Jul 2007 In : Annals of Botany. 100, 1, p. 111-118 8 p.

    Research output: Contribution to journalArticle

  349. Metabolomic approach to identifying bioactive compounds in berries: advances toward fruit nutritional enhancement

    Stewart, D., McDougall, G. J., Sungurtas, J., Verrall, S., Graham, J. & Martinussen, I. Jun 2007 In : Molecular Nutrition & Food Research. 51, 6, p. 645-51 7 p.

    Research output: Contribution to journalArticle

  350. Segregation and recombination of a multipartite mitochondrial DNA in populations of the potato cyst nematode Globodera pallida

    Armstrong, M. R., Husmeier, D., Phillips, M. S. & Blok, V. C. Jun 2007 In : Journal of Molecular Evolution. 64, 6, p. 689-701 13 p.

    Research output: Contribution to journalArticle

  351. Trees

    Raven, J. & Crane, P. 1 May 2007 In : Current Biology. 17, 9, p. R303-R304 1 p.

    Research output: Contribution to journalArticle

  352. A novel cleavage site within the potato leafroll virus P1 polyprotein

    Li, X., Halpin, C. & Ryan, M. D. May 2007 In : Journal of General Virology. 88, 5, p. 1620-1623 4 p.

    Research output: Contribution to journalArticle

  353. Plasmodesmal Targeting and Accumulation of TMV Movement Protein

    Wright, K. M., Chapman, S. & Roberts, A. G. May 2007 In : Plant Signaling and Behavior. 2, 3, p. 180-1 2 p.

    Research output: Contribution to journalArticle

  354. Ecological impacts of trees with modified lignin

    Halpin, C., Thain, S. C., Tilston, E. L., Guiney, E., Lapierre, C. & Hopkins, D. W. 1 Apr 2007 In : Tree Genetics and Genomes. 3, 2, p. 101-110 10 p.

    Research output: Contribution to journalArticle

  355. Cajal bodies and the nucleolus are required for a plant virus systemic infection

    Kim, S. H., Ryabov, E. V., Kalinina, N. O., Rakitina, D. V., Gillespie, T., Macfarlane, S., Haupt, S., Brown, J. W. S. & Taliansky, M. Apr 2007 In : The EMBO Journal. 26, 8, p. 2169-2179 11 p.

    Research output: Contribution to journalArticle

  356. Systemic modulation of gene expression in tomato by Trichoderma hamatum 382

    Alfano, G., Lewis Ivey, M. L., Cakir, C., Bos, J. I. B., Miller, S. A., Madden, L. V., Kamoun, S. & Hoitink, H. A. J. Apr 2007 In : Phytopathology. 97, 4, p. 429-437 9 p.

    Research output: Contribution to journalArticle

  357. Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds

    Mazzitelli, L., Hancock, R. D., Haupt, S., Walker, P. G., Pont, S. D. A., McNicol, J., Cardle, L., Morris, J., Viola, R., Brennan, R., Hedley, P. E. & Taylor, M. A. Mar 2007 In : Journal of Experimental Botany. 58, 5, p. 1035-1045 11 p.

    Research output: Contribution to journalArticle

  358. Targeting of TMV movement protein to plasmodesmata requires the actin/ER network: evidence from FRAP

    Wright, K. M., Wood, N. T., Roberts, A. G., Chapman, S., Boevink, P., MacKenzie, K. M. & Oparka, K. J. Jan 2007 In : Traffic. 8, 1, p. 21-31 11 p.

    Research output: Contribution to journalArticle

  359. C3 and C4 pathways of photosynthetic carbon assimilation in marine diatoms are under genetic, not environmental, control

    Roberts, K., Granum, E., Leegood, R. C. & Raven, J. A. 2007 In : Plant Physiology. 145, 1, p. 230-235 6 p.

    Research output: Contribution to journalArticle

  360. Carbon acquisition by diatoms

    Roberts, K., Granum, E., Leegood, R. C. & Raven, J. A. 2007 In : Photosynthesis Research. 93, 1-3, p. 79-88 10 p.

    Research output: Contribution to journalArticle

  361. Chemotaxis-induced spatio-temporal heterogeneity in multi-species host-parasitoid systems

    Pearce, I. G., Chaplain, M. A. J., Schofield, P. G., Anderson, A. R. A. & Hubbard, S. F. 2007 In : Journal of Mathematical Biology. 55, 3, p. 365-388 24 p.

    Research output: Contribution to journalArticle

  362. Disease induced dynamics in host-parasitoid systems: chaos and coexistence

    Preedy, K. F., Schofield, P. G., Chaplain, M. A. J. & Hubbard, S. F. 2007 In : Journal of the Royal Society Interface. 4, 14, p. 463-471 9 p.

    Research output: Contribution to journalArticle

  363. Effects of season and postharvest storage on the carotenoid content of Solanum phureja potato tubers

    Griffiths, D. W., Dale, M. F. B., Morris, W. L. & Ramsay, G. 2007 In : Journal of Agricultural and Food Chemistry. 55, 2, p. 379-385 7 p.

    Research output: Contribution to journalArticle

  364. Generation and screening of a BAC library from a diploid potato clone to unravel durable late blight resistance on linkage group IV

    Hein, I., McLean, K., Chalhoub, B. & Bryan, G. J. 2007 In : International Journal of Plant Genomics. 2007, 5 p.51421

    Research output: Contribution to journalArticle

  365. Interaction of a plant virus-encoded protein with the major nucleolar protein fibrillarin is required for systemic virus infection

    Kim, S. H., Macfarlane, S., Kalinina, N. O., Rakitina, D. V., Ryabov, E. V., Gillespie, T., Haupt, S., Brown, J. W. S. & Taliansky, M. 2007 In : Proceedings of the National Academy of Sciences of the United States of America. 104, 26, p. 11115-20 6 p.

    Research output: Contribution to journalArticle

  366. Mechanics of root-pullout from soil: a novel image and stress analysis procedure

    Hamza, O., Bengough, A. G., Bransby, M. F., Davies, M. C. R. & Hallett, P. D. 2007 Eco- and ground bio-engineering : the use of vegetation to improve slope stability: proceedings of the First International Conference on Eco-Engineering, 13-17 September 2004. Stokes, A., Spanos, I., Norris, J. E. & Cammeraat, E. (eds.). Dordrecht: Springer, p. 213-221 9 p. (Developments in Plant and Soil Sciences).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  367. Sources of uncertainty in the quantification of genetically modified oilseed rape contamination in seed lots

    Begg, G. S., Cullen, D. W., Iannetta, P. P. M. & Squire, G. R. 2007 In : Transgenic Research. 16, 1, p. 51-63 13 p.

    Research output: Contribution to journalArticle

  368. Stability of potato (Solanum tuberosum L.) plants regenerated via somatic embryos, axillary bud proliferated shoots, microtubers and true potato seeds: a comparative phenotypic, cytogenetic and molecular assessment

    Sharma, S. K., Bryan, G. J., Winfield, M. O. & Millam, S. 2007 In : Planta. 226, 6, p. 1449-1458 10 p.

    Research output: Contribution to journalArticle

  369. The tagged microarray marker (TAM) method for high-throughput detection of single nucleotide and indel polymorphisms

    Jing, R., Bolshakov, V. & Flavell, A. J. 2007 In : Nature Protocols. 2, 1, p. 168-177 10 p.

    Research output: Contribution to journalArticle

  370. Tracking the sudden oak death pathogen

    Cooke, D. E. L. 2007 In : Molecular Ecology. 16, 18, p. 3735-3736 2 p.

    Research output: Contribution to journalArticle

  371. Impact of fungal and bacterial biocides on microbial induced water repellency in arable soil

    Feeney, D. S., Hallett, P. D., Rodger, S., Bengough, A. G., White, N. A. & Young, I. M. Nov 2006 In : Geoderma. 135, p. 72-80 9 p.

    Research output: Contribution to journalArticle

  372. The C-terminal half of Phytophthora infestans RXLR effector AVR3a is sufficient to trigger R3a-mediated hypersensitivity and suppress INF1-induced cell death in Nicotiana benthamiana

    Bos, J. I. B., Kanneganti, T-D., Young, C., Cakir, C., Huitema, E., Win, J., Armstrong, M. R., Birch, P. R. J. & Kamoun, S. Oct 2006 In : Plant Journal. 48, 2, p. 165-176 12 p.

    Research output: Contribution to journalArticle

  373. Synergistic interactions of the plant cell death pathways induced by Phytophthora infestans Nep1-like protein PiNPP1.1 and INF1 elicitin

    Kanneganti, T-D., Huitema, E., Cakir, C. & Kamoun, S. Aug 2006 In : Molecular Plant - Microbe Interactions. 19, 8, p. 854-863 10 p.

    Research output: Contribution to journalArticle

  374. A rnyxobacterial S-motility protein dances with poles

    Huitema, E. & Viollier, P. H. Jun 2006 In : Trends in Microbiology. 14, 6, p. 247-248 2 p.

    Research output: Contribution to journalScientific review

  375. Biomechanics of plant roots: estimating localised deformation with particle image velocimetry

    Hamza, O., Bengough, A. G., Bransby, M. F., Davies, M. C. R. & Hallett, P. D. May 2006 In : Biosystems Engineering. 94, 1, p. 119-132 14 p.

    Research output: Contribution to journalArticle

  376. Wolbachia infection suppresses both host defence and parasitoid counter-defence

    Fytrou, A., Schofield, P. G., Kraaijeveld, A. R. & Hubbard, S. F. Apr 2006 In : Proceedings of the Royal Society B. 273, 1588, p. 791-796 6 p.

    Research output: Contribution to journalArticle

  377. Bacterial birth scar proteins mark future flagellum assembly site

    Huitema, E., Pritchard, S., Matteson, D., Radhakrishnan, S. K. & Viollier, P. H. 10 Mar 2006 In : Cell. 124, 5, p. 1025-1037 13 p.

    Research output: Contribution to journalArticle

  378. Theoretical steps towards modelling resilience in complex systems

    Hawes, C. & Reed, C. 1 Jan 2006 Computational Science and Its Applications - ICCSA 2006: International Conference, Glasgow, UK, May 8-11, 2006. Proceedings, Part I. Gavrilova, M., Gervasi, O., Kumar, V., Kenneth Tan, C. J., Taniar, D., Laganà, A., Mun, Y. & Choo, H. (eds.). Berlin and New York: Springer, Vol. 3980 LNCS, p. 644-653 10 p.

    Research output: Chapter in Book/Report/Conference proceedingChapter

  379. Assessing the impact of biological exudates associated with soil water repellency

    Feeney, D. S., Bengough, A. G., Hallett, P. D., Rodger, S., White, N. & Young, I. M. 2006 Soil management for sustainability. Horn, R., Fleige, H., Peth, S. & Peng, X. H. (eds.). Reiskirchen: CATENA VERLAG, p. 475-483 9 p. (Advances in geoecology).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  380. Modelling the spatio-temporal dynamics of multi-species host-parasitoid interactions: heterogeneous patterns and ecological implications

    Pearce, I. G., Chaplain, M. A. J., Schofield, P. G., Anderson, A. R. A. & Hubbard, S. F. 2006 In : Journal of Theoretical Biology. 241, 4, p. 876-886 11 p.

    Research output: Contribution to journalArticle

  381. GERMINATE. a generic database for integrating genotypic and phenotypic information for plant genetic resource collections

    Lee, J. M., Davenport, G. F., Marshall, D., Ellis, T. H. N., Ambrose, M. J., Dicks, J., van Hintum, T. J. L. & Flavell, A. J. Oct 2005 In : Plant Physiology. 139, 2, p. 619-631 13 p.

    Research output: Contribution to journalArticle

  382. Insertional polymorphism and antiquity of PDR1 retrotransposon insertions in Pisum species

    Jing, R., Knox, M. R., Lee, J. M., Vershinin, A. V., Ambrose, M., Ellis, T. H. N. & Flavell, A. J. Oct 2005 In : Genetics. 171, 2, p. 741-752 12 p.

    Research output: Contribution to journalArticle

  383. Root cap influences root colonisation by Pseudomonas fluorescens SBW25 on maize

    Humphris, S. N., Bengough, A. G., Griffiths, B. S., Kilham, K., Rodger, S., Stubbs, V., Valentine, T. A. & Young, I. M. Sep 2005 In : FEMS Microbiology Ecology. 54, 1, p. 123-130 8 p.

    Research output: Contribution to journalArticle

  384. The TIP GROWTH DEFECTIVE1 S-acyl transferase regulates plant cell growth in Arabidopsis

    Hemsley, P. A., Kemp, A. C. & Grierson, C. S. Sep 2005 In : Plant Cell. 17, 9, p. 2554-2563 10 p.

    Research output: Contribution to journalArticle

  385. A mass balance based numerical method for the fractional advection-dispersion equation: theory and application

    Zhang, X., Crawford, J. W., Deeks, L. K., Stutter, M. I., Bengough, A. G. & Young, I. M. 27 Jul 2005 In : Water Resources Research. 41, 7, p. - 11 p.W07029

    Research output: Contribution to journalArticle

  386. Determination of soil hydraulic conductivity with the lattice Boltzmann method and soil thin-section technique

    Zhang, X., Deeks, L. K., Bengough, A. G., Crawford, J. W. & Young, I. M. 9 May 2005 In : Journal of Hydrology. 306, 1-4, p. 59-70 12 p.

    Research output: Contribution to journalArticle

  387. An ancestral oomycete locus contains late blight avirulence gene Avr3a, encoding a protein that is recognized in the host cytoplasm

    Armstrong, M. R. , Whisson, S. C. , Pritchard, L. , Bos, J. I. B. , Venter, E. , Avrova, A. O. , Rehmany, A. P. , Bohme, U. , Brooks, K. , Cherevach, I. , Hamlin, N. , White, B. , Fraser, A. , Lord, A. , Quail, M. A. , Churcher, C. , Hall, N. , Berriman, M. , Huang, S. , Kamoun, S. & 3 others Beynon, J. L., Birch, P. R. J. & Cook, R. J. (ed.) May 2005 In : Proceedings of the National Academy of Sciences of the United States of America. 102, 21, p. 7766-7771 6 p.

    Research output: Contribution to journalArticle

  388. Differences in intensity and specificity of hypersensitive response induction in Nicotiana spp. by INN, INF2A, and INF2B of Phytophthora infestans

    Huitema, E., Vleeshouwers, V. G. A. A., Cakir, C., Kamoun, S. & Govers, F. Mar 2005 In : Molecular Plant - Microbe Interactions. 18, 3, p. 183-193 11 p.

    Research output: Contribution to journalArticle

  389. An allelic series reveals essential roles for FY in plant development in addition to flowering-time control

    Henderson, I. R., Liu, F., Drea, S., Simpson, G. G. & Dean, C. Jan 2005 In : Development. 132, 16, p. 3597-3607 11 p.

    Research output: Contribution to journalArticle

  390. Arabidopsis nucleolar protein database (AtNoPDB)

    Brown, J. W. S., Shaw, P. J., Shaw, P. & Marshall, D. F. 2005 In : Nucleic Acids Research. 33, S1, p. D633-D636 4 p.

    Research output: Contribution to journalArticle

  391. Dynamic heterogeneous spatio-temporal pattern formation in host-parasitoid systems with synchronised generations

    Schofield, P. G., Chaplain, M. A. J. & Hubbard, S. F. 2005 In : Journal of Mathematical Biology. 50, 5, p. 559-583 25 p.

    Research output: Contribution to journalArticle

  392. Evolution of searching and life history characteristics in individual-based models of host-parasitoid-microbe associations

    Schofield, P., Chaplain, M. & Hubbard, S. 2005 In : Journal of Theoretical Biology. 237, 1, p. 1-16 16 p.

    Research output: Contribution to journalArticle

  393. Large-scale gene discovery in the oomycete Phytophthora infestans reveals likely components of phytopathogenicity shared with true fungi

    Huitema, E. & 30 others Randall, T. A., Dwyer, R. A., Beyer, K., Cvitanich, C., Kelkar, H., Ah Fong, A. M. V., Gates, K., Roberts, S., Yatzkan, E., Gaffney, T., Law, M., Testa, A., Torto-Alalibo, T., Zhang, M., Zheng, L., Mueller, E., Windass, J., Binder, A., Birch, P. R. J., Gisi, U., Govers, F., Gow, N. A., Mauch, F., van West, P., Waugh, M. E., Yu, J., Boller, T., Kamoun, S., Lam, S. T. & Judelson, H. S. 2005 In : Molecular Plant - Microbe Interactions. 18, 3, p. 229-243 15 p.

    Research output: Contribution to journalArticle

  394. Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions

    Pendle, A. F., Clark, G. P., Boon, R., Lewandowska, D., Lam, Y. W., Andersen, J., Mann, M., Lamond, A. I., Brown, J. W. S. & Shaw, P. J. 2005 In : Molecular Biology of the Cell. 16, 1, p. 260-269 10 p.

    Research output: Contribution to journalArticle

  395. Plant nuclear bodies

    Shaw, P. J. & Brown, J. W. S. Dec 2004 In : Current Opinion in Plant Biology. 7, 6, p. 614-620 7 p.

    Research output: Contribution to journalArticle

  396. The evolution of modern eukaryotic phytoplankton

    Raven, J., Falkowski, P. G., Katz, M. E., Quigg, A., Schofield, O., Taylor, F. J. R. & Knoll, A. H. Jul 2004 In : Science. 305, 5682, p. 354-360 7 p.

    Research output: Contribution to journalArticle

  397. A Kazal-like extracellular serine protease inhibitor from Phytophthora infestans targets the tomato pathogenesis-related protease P69B

    Tian, M., Huitema, E., da Cunha, L., Torto-Alalibo, T. & Kamoun, S. 18 Jun 2004 In : Journal of Biological Chemistry. 279, 25, p. 26370-26377 8 p.

    Research output: Contribution to journalArticle

  398. Combining thermal and visible imagery for estimating canopy temperature and identifying plant stress

    Leinonen, I. & Jones, H. Jun 2004 In : Journal of Experimental Botany. 55, 401, p. 1423-1431 9 p.

    Research output: Contribution to journalArticle

  399. Intraspecific comparative genomics to select candidate avirulence genes from Phytophthora infestants

    Bos, J. I. B., Liu, Z., Torto, T. A., Tian, M. & Kamoun, S. Jun 2004 In : Phytopathology. 94, 6, p. S156-S156 1 p.

    Research output: Contribution to journalMeeting abstract

  400. Molecular interactions between a plant virus movement protein and RNA: force spectroscopy investigation

    Andreev, I. A., Kim, S. H., Kalinina, N. O., Rakitina, D. V., Fitzgerald, S., Palukaitis, P. & Taliansky, M. Jun 2004 In : Journal of Molecular Biology. 339, 5, p. 1041-1047 7 p.

    Research output: Contribution to journalArticle

  401. Linking sequence to phenotype in Phytophthora-plant interactions

    Huitema, E., Bos, J. I. B., Tian, M., Win, J., Waugh, M. E. & Kamoun, S. Apr 2004 In : Trends in Microbiology. 12, 4, p. 193-200 8 p.

    Research output: Contribution to journalScientific review

  402. Root border cells take up and release glucose-C

    Stubbs, V. E. C., Standing, D., Knox, O. G. G., Killham, K., Bengough, A. G. & Griffiths, B. Feb 2004 In : Annals of Botany. 93, 2, p. 221-224 4 p.

    Research output: Contribution to journalArticle

  403. Determinants of plant U12-dependent intron splicing efficiency

    Lewandowska, D., Simpson, C. G., Clark, G. P., Jennings, N. S., Barciszewska-Pacak, M., Lin, C-F., Makalowski, W., Brown, J. W. S. & Jarmolowski, A. 2004 In : Plant Cell. 16, 5, p. 1340-1352 13 p.

    Research output: Contribution to journalArticle

  404. Dissection of nonhost resistance of Arabidopsis to Phytophthora infestans

    Huitema, E., Dong, S., Hamada, W. & Kamoun, S. 2004 In : Phytopathology. 94, 6, p. S159 1 p.

    Research output: Contribution to journalMeeting abstract

  405. Dual functionality of a plant U-rich intronic sequence element

    Simpson, C. G., Jennings, N., Clark, G. P., Thow, G. & Brown, J. W. S. 2004 In : Plant Journal. 37, 1, p. 82-91 10 p.

    Research output: Contribution to journalArticle

  406. Gel observation chamber for rapid screening of root traits in cereal seedlings

    Bengough, A. G., Gordon, D. C., Al-Menaie, H., Ellis, R. P., Allan, D., Keith, R., Thomas, W. T. B. & Forster, B. P. 2004 In : Plant and Soil. 262, 1-2, p. 63-70 8 p.

    Research output: Contribution to journalArticle

  407. Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors

    Bell, K. S. , Sebaihia, M. , Pritchard, L. , Holden, M. T. G. , Hyman, L. J. , Holeva, M. C. , Thomson, N. R. , Bentley, S. D. , Churcher, L. J. C. , Mungall, K. , Atkin, R. , Bason, N. , Brooks, K. , Chillingworth, T. , Clark, K. , Doggett, J. , Fraser, A. , Hance, Z. , Hauser, H. , Jagels, K. & 13 others Moule, S., Norbertczak, H., Ormond, D., Price, C., Quail, M. A., Sanders, M., Walker, D., Whitehead, S., Salmond, G. P. C., Birch, P. R. J., Parkhill, J., Toth, I. K. & Haselkorn, R. (ed.) 2004 In : Proceedings of the National Academy of Sciences of the United States of America. 101, 30, p. 11105-11110 6 p.

    Research output: Contribution to journalArticle

  408. Involvement of the nucleolus in plant virus systemic infection

    Kim, S. H., Ryabov, E. V., Brown, J. W. S. & Taliansky, M. 2004 In : Biochemical Society Transactions. 32, p. 557-60 4 p.

    Research output: Contribution to journalArticle

  409. Active defence responses associated with non-host resistance of Arabidopsis thaliana to the oomycete pathogen Phytophthora infestans

    Huitema, E., Vleeshouwers, V. G. A. A., Francis, D. M. & Kamoun, S. Nov 2003 In : Molecular Plant Pathology. 4, 6, p. 487-500 14 p.

    Research output: Contribution to journalArticle

  410. A microarray-based high throughput molecular marker genotyping method: the tagged microarray marker (TAM) approach

    Flavell, A. J., Bolshakov, V. N., Booth, A., Jing, R., Russell, J., Ellis, T. H. N. & Isaac, P. Oct 2003 In : Nucleic Acids Research. 31, 19, p. e115

    Research output: Contribution to journalArticle

  411. Does the presence of detached root border cells of Zea mays alter the activity of the pathogenic nematode Meloidogyne incognita?

    Rodger, S., Bengough, A. G., Griffiths, B. S., Stubbs, V. & Young, I. M. Sep 2003 In : Phytopathology. 93, 9, p. 1111-1114 4 p.

    Research output: Contribution to journalArticle

  412. EST mining and functional expression assays identify extracellular effector proteins from the plant pathogen Phytophthora

    Torto, T. A., Li, S., Styer, A., Huitema, E., Testa, A., Gow, N. A. R., van West, P. & Kamoun, S. Jul 2003 In : Genome Research. 13, 7, p. 1675-1685 11 p.

    Research output: Contribution to journalArticle

  413. Plant influence on rhizosphere hydraulic properties: direct measurements using a miniaturized infiltrometer

    Hallett, P. D., Gordon, D. C. & Bengough, A. G. Mar 2003 In : New Phytologist. 157, 3, p. 597-603 7 p.

    Research output: Contribution to journalArticle

  414. Variation in structure and activity among elicitins from Phytophthora sojae

    Qutob, D., Huitema, E., Gijzen, M. & Kamoun, S. Mar 2003 In : Molecular Plant Pathology. 4, 2, p. 119-124 6 p.

    Research output: Contribution to journalArticle

  415. Low temperature enhances photosynthetic down-regulation in French bean (Phaseolus vulgaris L.) plants

    Tsonev, T., Velikova, V., Georgieva, K., Hyde, P. F. & Jones, H. Feb 2003 In : Annals of Botany. 91, 3, p. 343-352 10 p.

    Research output: Contribution to journalArticle

  416. Plant roots release phospholipid surfactants that modify the physical and chemical properties of soil

    Read, D. B., Bengough, A. G., Gregory, P. J., Crawford, J. W., Robinson, D., Scrimgeour, C. M., Young, I. M., Zhang, K. & Zhang, X. Feb 2003 In : New Phytologist. 157, 2, p. 315-326 12 p.

    Research output: Contribution to journalArticle

  417. Agrosuppression: a bioassay for the hypersensitive response suited to high-throughput screening

    Kamoun, S., Hamada, W. & Huitema, E. Jan 2003 In : Molecular Plant - Microbe Interactions. 16, 1, p. 7-13 7 p.

    Research output: Contribution to journalArticle

  418. Autoregulation of FCA pre-mRNA processing controls Arabidopsis flowering time

    Quesada, V., Macknight, R., Dean, C. & Simpson, G. G. Jan 2003 In : The EMBO Journal. 22, 12, p. 3142-3152 11 p.

    Research output: Contribution to journalArticle

  419. FY is an RNA 3 ' end-processing factor that interacts with FCA to control the Arabidopsis floral transition

    Simpson, G. G., Dijkwel, P. P., Quesada, V., Henderson, I. R. & Dean, C. 2003 In : Cell. 113, 6, p. 777-787 11 p.

    Research output: Contribution to journalArticle

  420. Intraspecific comparative genomics to select candidate avirulence genes from Phytophthora infestants

    Bos, J. I. B., Liu, Z., Torto, T. A., Tian, M. & Kamoun, S. 2003

    Research output: Contribution to conferenceAbstract

  421. Soil factors determined nematode community composition in a two year pot experiment

    Griffiths, B. S., Neilson, R. & Bengough, A. G. 2003 In : Nematology. 5, 6, p. 889-897 9 p.

    Research output: Contribution to journalArticle

  422. Proper meals in transition: young married couples on the nature of eating together

    Marshall, D. W. & Anderson, A. S. Dec 2002 In : Appetite. 39, 3, p. 193-206 14 p.

    Research output: Contribution to journalArticle

  423. Use of infrared thermography for monitoring stomatal closure in the field: application to grapevine

    Jones, H., Stoll, M., Santos, T., Sousa, C. D., Chaves, M. M. & Grant, O. M. Nov 2002 In : Journal of Experimental Botany. 53, 378, p. 2249-2260 12 p.

    Research output: Contribution to journalArticle

  424. Functional significance of the alternative transcript processing of the Arabidopsis floral promoter FCA

    Macknight, R., Duroux, M., Laurie, R., Dijkwel, P. P., Simpson, G. & Dean, C. Apr 2002 In : Plant Cell. 14, 4, p. 877-888 12 p.

    Research output: Contribution to journalArticle

  425. From sequence to phenotype: functional genomics of Phytophthora

    Kamoun, S., Dong, S., Hamada, W., Huitema, E., Kinney, D., Morgan, W. R., Styer, A., Testa, A. & Torto, T. A. 2002 In : Canadian Journal of Plant Pathology-Revue Canadienne de Phytopathologie. 24, 1, p. 6-9 4 p.

    Research output: Contribution to journalArticle

  426. The extent to which nematode communities are affected by soil factors: a pot experiment

    Griffiths, B. S., Bengough, A. G., Neilson, R. & Trudgill, D. L. 2002 In : Nematology. 4, 8, p. 943-952 10 p.

    Research output: Contribution to journalArticle

  427. An off-line implementation of the stable isotope technique for measurements of alternative respiratory pathway activities

    Nagel, O. W., Waldron, S. & Jones, H. Nov 2001 In : Plant Physiology. 127, 3, p. 1279-1286 8 p.

    Research output: Contribution to journalArticle

  428. The evolution of Ty1-copia group retrotransposons in gymnosperms

    Stuart-Rogers, C. & Flavell, A. J. Feb 2001 In : Molecular Biology and Evolution. 18, 2, p. 155-163 9 p.

    Research output: Contribution to journalArticle

  429. Phosphorus limitation of nitrogen fixation by Trichodesmium in the central Atlantic Ocean

    Raven, J., Capone, D. G., Carpenter, E. J., Hutchins, D. A., Sanudo-Wilhelmy, S. A., Kustka, A. B., Gobler, C. J., Yang, M., Lwiza, K. & Burn, J. 2001 In : Nature. 411, 6833, p. 66-69 4 p.

    Research output: Contribution to journalArticle

  430. Cloning, expression and functional characterisation of a peroxiredoxin from the potato cyst nematode Globedera rostochiensis

    Robertson, L., Robertson, W. M., Sobczak, M., Helder, J., Tetaud, E., Ariyanayagam, M. R., Ferguson, M. A. J., Fairlamb, A. & Jones, J. T. Nov 2000 In : Molecular and Biochemical Parasitology. 111, 1, p. 41-49 9 p.

    Research output: Contribution to journalArticle

  431. Dissection of nonhost resistance of Nicotiana to Phytophthora infestans

    Kamoun, S., Dong, S. J., Huitema, E., Torto, G. A., van West, P., Vleeshouwers, V. G. A. A. & Govers, F. 2000 Biology of plant-microbe interactions. de Wit, P. J. G. M., Bisseling, T. & Stiekema, W. J. (eds.). St. Paul: International Society for Molecular Plant-Microbe Interactions, Vol. 2, p. 180-185 6 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  432. Resistance to oomycetes: a general role for the hypersensitive response?

    Kamoun, S., Huitema, E. & Vleeshouwers, V. G. A. A. May 1999 In : Trends in Plant Science. 4, 5, p. 196-200 5 p.

    Research output: Contribution to journalScientific review

  433. Characterization of the S-adenosylmethionine decarboxylase (SAMDC) gene of potato

    Arif, S. A. M., Taylor, M. A., George, L. A., Butler, A. R., Burch, L. R., Davies, H. V., Stark, M. J. R. & Kumar, A. Oct 1994 In : Plant Molecular Biology. 26, 1, p. 327-338 12 p.

    Research output: Contribution to journalArticle

Find Research Units in Discovery

Library & Learning Centre

Contact | Accessibility | Policy