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Additional file 6 of The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

  • Jacob Matthew Schreiber (Stanford University) (Creator)
  • Carles A. Boix (Creator)
  • Jin Wook Lee (Creator)
  • Hongyang Li (Creator)
  • Yuanfang Guan (Creator)
  • Chun-Chieh Chang (Creator)
  • Jen-Chien Chang (Creator)
  • Alex Hawkins-Hooker (Creator)
  • Bernhard Schölkopf (Creator)
  • Gabriele Schweikert (Creator)
  • Mateo Rojas-Carulla (Creator)
  • Arif Canakoglu (Creator)
  • Francesco Guzzo (Creator)
  • Luca Nanni (Creator)
  • Marco Masseroli (Creator)
  • Mark James Carman (Creator)
  • Pietro Pinoli (Creator)
  • Chenyang Hong (Creator)
  • Kevin Y. Yip (Creator)
  • Jefrey P. Spence (Stanford University) (Creator)
  • Sanjit Singh Batra (Creator)
  • Yun S. Song (Creator)
  • Shaun Mahony (Creator)
  • Zheng Zhang (Creator)
  • Wuwei Tan (Creator)
  • Yang Shen (Creator)
  • Yuanfei Sun (Creator)
  • Minyi Shi (Creator)
  • Jessika Adrian (Creator)
  • Richard S. Sandstrom (Creator)
  • Nina P. Farrell (Creator)
  • Jessica M. Halow (Creator)
  • Kristen A. Lee (Creator)
  • Lixia Jiang (Creator)
  • Xinqiong Yang (Creator)
  • Charles B. Epstein (Creator)
  • J. Seth Strattan (Creator)
  • Bradley E. Bernstein (Creator)
  • Michael Paul Snyder (Creator)
  • Manolis Kellis (Creator)
  • William S. Noble (Creator)
  • Anshul Bharat Kundaje (Creator)

Dataset

Description

Additional file 6. Performance measures across all ten bootstraps for each of the submitted methods on the challenge round 1 validation set.
Date made available12 Feb 2025
Publisherfigshare

Keywords

  • epigenomic profiles abstract
  • encode imputation challenge
  • cell type imputations
  • best imputation methods
  • imputation evaluations
  • distributional shifts
  • critical assessment

Contact

  • The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles

    Schreiber,, J. M. (Lead / Corresponding author), Boix, C. A. (Lead / Corresponding author), Lee, J. W., Li, H., Guan, Y., Chang, C.-C., Chang, J.-C., Hawkins-Hooker, A., Schölkopf, B., Schweikert, G., Carulla, M. R., Canakoglu, A., Guzzo, F., Nanni, L., Masseroli, M., Carman, M. J., Pinoli, P., Hong, C., Yip, K. Y. & Spence, J. P. & 23 others, Batra, S. S., Song, Y. S., Mahony, S., Zhang, Z., Tan, W., Shen, Y., Sun, Y., Shi, M., Adrian, J., Sandstrom, R. S., Farrell, N. P., Halow, J., Lee, K., Jiang, L., Yang, X., Epstein, C. B., Strattan, J. S., Bernstein, B. E., Snyder, M. P., Kellis, M., Noble, W. S., Kundaje, A. B. & ENCODE Imputation Challenge Participants, 18 Apr 2023, In: Genome Biology. 24, 1, 22 p., 79.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    File
    12   Link opens in a new tab Citations (Scopus)
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