Biological Chemistry and Drug Discovery

2023

Comparative Genomics for Evolutionary Cell Biology Using AMOEBAE: Understanding the Golgi and Beyond

Barlow, L. D. (Lead / Corresponding author), Maciejowski, W., More, K., Terry, K., Vargová, R., Záhonová, K. & Dacks, J. B. (Lead / Corresponding author), 2023, Golgi: Methods and Protocols. Wang, Y., Lupashin, V. V. & Graham, T. R. (eds.). New York: Humana Press, p. 431-452 22 p. (Methods in Molecular Biology; vol. 2557).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

7 Citations (Scopus)

HiBiT Cellular Thermal Shift Assay (HiBiT CETSA)

Ramachandran, S., Szewczyk, M., Barghout, S. H., Ciulli, A., Barsyte-Lovejoy, D. & Vu, V. (Lead / Corresponding author), 2023, Chemogenomics: Methods and Protocols. Merk, D. & Chaikuad, A. (eds.). 1 ed. New York: Humana Press, p. 149-165 17 p. (Methods in Molecular Biology; vol. 2706).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

Open Access

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4 Citations (Scopus)

68 Downloads (Pure)

2022

Genetic Transformation of Candida auris via Homology-Directed Repair Using a Standard Lithium Acetate Protocol

Bravo Ruiz, G. & Lorenz, A. (Lead / Corresponding author), 9 Jun 2022, Candida auris: Methods and Protocols. Lorenz, A. (ed.). 1 ed. Springer , p. 95-110 16 p. (Methods in Molecular Biology; vol. 2517).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

3 Citations (Scopus)

PROTAC Degraders: Mechanism, recent advances, and future challenges

Ciulli, A. & Hsia, O., 18 Nov 2022, Protein Homeostasis in Drug Discovery: A Chemical Biology Perspective. Kostic, M. & Jones, L. H. (eds.). Hoboken, NJ: Wiley, p. 317-356 40 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

3 Citations (Scopus)

2021

Automated Phylogenetic Analysis Using Best Reciprocal BLAST

Butterfield, E. R. (Lead / Corresponding author), Abbott, J. C. & Field, M. C., 2021, Parasite Genomics: Methods and Protocols. de Pablos, L. M. & Sotillo, J. (eds.). 1 ed. New York: Humana Press, p. 41-63 23 p. (Methods in Molecular Biology; vol. 2369).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

Open Access

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1 Citation (Scopus)

46 Downloads (Pure)

Mechanistic and Structural Features of PROTAC Ternary Complexes

Casement, R., Bond, A., Craigon, C. & Ciulli, A. (Lead / Corresponding author), 2021, Targeted Protein Degradation: Methods and Protocols. Cacace, A. M., Hickey, C. M. & Békés, M. (eds.). 1 ed. New York: Humana Press, p. 79-113 35 p. (Methods in Molecular Biology; vol. 2365).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

Open Access

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39 Citations (Scopus)

921 Downloads (Pure)

MST and TRIC Technology to Reliably Study PROTAC Binary and Ternary Binding in Drug Development

Bartoschik, T., Zoephel, A., Rumpel, K., Ciulli, A. & Heffern, C. (Lead / Corresponding author), 2021, Targeted Protein Degradation: Methods and Protocols. Cacace, A. M., Hickey, C. M. & Békés, M. (eds.). 1 ed. New York: Humana Press, p. 115-133 19 p. (Methods in Molecular Biology; vol. 2365).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

Open Access

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8 Citations (Scopus)

471 Downloads (Pure)

Synthesis of 1′-(4′-Thio-β-d-Ribofuranosyl) Uracil

Guinan, M., Miller, G. J., Lynch, D. & Smith, M., 2021, Carbohydrate Chemistry: Proven Synthetic Methods. Kosma, P., Wrodnigg, T. & Stütz, A. (eds.). 1 ed. Boca Raton: CRC Press, Vol. 5. 6 p.

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

2020

Sorting the Muck from the Brass: Analysis of Protein Complexes and Cell Lysates

Zoltner, M., Del Pino, R. C. & Field, M. C., 2020, Trypanosomatids: Methods and Protocols. Michels, P. A. M., Ginger, M. L. & Zilberstein, D. (eds.). New York: Humana Press, p. 645-653 9 p. (Methods in Molecular Biology; vol. 2116).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

4 Citations (Scopus)

2019

DiCre-Based Inducible Disruption of Leishmania Genes

Duncan, S. M., Myburgh, E., Alves-Ferreira, E. V. & Mottram, J. C. (Lead / Corresponding author), 2019, Leishmania: Methods and Protocols. Clos, J. (ed.). New York: Humana Press, Vol. 1971. p. 211-224 14 p. (Methods in Molecular Biology; vol. 1971).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

2 Citations (Scopus)

2017

Euglena gracilis Genome and Transcriptome: Organelles, Nuclear Genome Assembly Strategies and Initial Features

Ebenezer, T. E., Carrington, M., Lebert, M., Kelly, S. (Lead / Corresponding author) & Field, M. C. (Lead / Corresponding author), 21 Apr 2017, Euglena: Biochemistry, Cell and Molecular Biology. Schwartzbach, S. D. & Shigeoka , S. (eds.). Switzerland: Springer International Publishing, p. 125-140 16 p. (Advances in Experimental Medicine and Biology; vol. 979).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

32 Citations (Scopus)

Profiling phosphopeptide-binding domain recognition specificity using peptide microarrays

Tinti, M. (Lead / Corresponding author), Panni, S. (Lead / Corresponding author) & Cesareni, G., 2017, Small molecule microarrays: methods and protocols. Uttamchandani , M. & Yao, S. Q. (eds.). New York: Springer , p. 177-193 17 p. (Methods in molecular biology; vol. 1518).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

3 Citations (Scopus)

2016

High-Efficiency Isolation of Nuclear Envelope Protein Complexes from Trypanosomes

Obado, S. O., Field, M. C. (Lead / Corresponding author), Chait, B. T. & Rout, M. P. (Lead / Corresponding author), 2016, The Nuclear Envelope. Shackleton, S., Collas, P. & Schirmer, E. C. (eds.). New York: Humana Press, p. 67-80 14 p. (Methods in Molecular Biology; vol. 1411).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

24 Citations (Scopus)

Imaging functional nucleic acid delivery to skin

Kaspar, R. L. (Lead / Corresponding author), Hickerson, R. P., González-González, E., Flores, M. A., Speaker, T. P., Rogers, F. A., Milstone, L. M. & Contag, C. H. (Lead / Corresponding author), 2016, RNA Imaging: Methods and Protocols. Medarova , Z. (ed.). New York: Humana Press, p. 1-24 24 p. (Methods in Molecular Biology; vol. 1372).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

2 Citations (Scopus)

2015

Surface plasmon resonance analysis of seven-transmembrane receptors

Aristotelous, T., Hopkins, A. L. & Navratilova, I. (Lead / Corresponding author), 2015, Membrane proteins—production and functional characterization. Shukla, A. K. (ed.). Academic Press, p. 499-525 27 p. (Methods in Enzymology; vol. 556).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

23 Citations (Scopus)

2014

Structure-based virtual screening for the identification of RNA-binding ligands

Daldrop, P. & Brenk, R., 2014, Therapeutic applications of ribozymes and riboswitches: methods and protocols. Lafontaine, D. & Dubé, A. (eds.). Humana Press, p. 127-139 13 p. (Methods in Molecular Biology; vol. 1103).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

8 Citations (Scopus)

2013

Biophysical screening for the discovery of small-molecule ligands

Ciulli, A., 2013, Protein-ligand interactions: methods and applications. Williams, M. A. & Daviter, T. (eds.). Humana Press, p. 357-388 32 p. (Methods in Molecular Biology; vol. 1008).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

65 Citations (Scopus)

Creation and characterization of glycosyltransferase mutants of trypanosoma brucei

Izquierdo, L., Güther, M. L. S. & Ferguson, M. A. J., 2013, Glycosyltransferases. Brockhausen, I. (ed.). Humana Press, p. 249-275 27 p. (Methods in Molecular Biology; vol. 1022).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

6 Citations (Scopus)

2012

The structure and folding of helical junctions in RNA

Lilley, D. M. J., 2012, Innovations in Biomolecular Modeling and Simulations. Schlick, T. (ed.). Cambridge: Royal Society of Chemistry, (RSC Biomolecular Sciences).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

2010

A method for rapid genetic integration into Plasmodium falciparum utilizing mycobacteriophage Bxb1 integrase

Adjalley, S. H., Lee, M. C. S. & Fidock, D. A., 1 Jan 2010, In Vitro Mutagenesis Protocols: Third Edition. Braman, J. (ed.). 3 ed. p. 87-100 14 p. (Methods in Molecular Biology; vol. 634).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

38 Citations (Scopus)

2007

Proteins interacting with Saccharomyces cerevisiae type 1 protein phosphatase catalytic subunit identified by single-step affinity purification and mass spectrometry

Walsh, E. P., Lamont, D., Beattie, K. A. & Stark, M. J. R., 2007, Protein phosphatase protocols. Moorhead, G. (ed.). Humana Press, p. 235-246 12 p. (Methods in Molecular Biology; vol. 365).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

1 Citation (Scopus)

2005

Down-regulating gene expression by RNA interference in Trypanosoma brucei

Clayton, C. E., Estévez, A. M., Hartmann, C., Alibu, V. P., Field, M. & Horn, D., 2005, RNA silencing: Methods and protocols. Carmichael, G. G. (ed.). Springer , Vol. 309. p. 39-60 22 p. (Methods in Molecular Biology).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

33 Citations (Scopus)

1999

Analysis of the carbohydrate components of glycosylphosphatidylinositol structures using fluorescent labeling

Zitzmann, N. & Ferguson, M. A. J., 1999, Protein lipidation protocols . Gelb, M. H. (ed.). Totowa: Humana Press, p. 73-89 17 p. (Methods in Molecular Biology; vol. 116).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

9 Citations (Scopus)

1998

Analysis of the carbohydrate and lipid components of glycosylphosphatidylinositol structures

Treumann, A., Güther, M. L., Schneider, P. & Ferguson, M. A. J., 1998, Glycoanalysis protocols . Hounsell, E. F. (ed.). Totowa: Humana Press, p. 213-235 23 p. (Methods in Molecular Biology; vol. 76).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

13 Citations (Scopus)

1995

Microscale analysis of glycosylphosphatidylinositol structures

Schneider, P. & Ferguson, M. A. J., 1995, Lipid modifications of proteins. Casey, P. J. & Buss, J. E. (eds.). Academic Press, p. 614-630 17 p. (Methods in Enzymology; vol. 250).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

51 Citations (Scopus)

1993

The microanalysis of glycosyl-phosphatidylinositol glycans

Güther, M. L. & Ferguson, M. A. J., 1993, Glycoprotein analysis in biomedicine . Hounsell , E. F. (ed.). Totowa: Humana Press, p. 99-117 19 p. (Methods in Molecular Biology; vol. 14).

Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

11 Citations (Scopus)

Biological Chemistry and Drug Discovery

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