Computational Biology

School of Life Sciences

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Abbott, James
- Computational Biology - Data Analysis and Bioinformatics Group Manager
Person: Research
20192020
Antonides, Lysbeth
- Computational Biology - Research Assistant
Person: Research
Barton, Geoffrey
- Computational Biology - Professor & Personal Chair of Bioinformatics
Person: Academic
19872021

6 Active
8 Not started
13 Finished

Novel Machine Learning Techniques to Elucidate Function and Dynamics of Epigenomic Mechanisms
Schweikert, G.
Academy of Medical Sciences
15/02/21 → 14/02/23
Project: Research
High Resolution Structure, Function and Anti-Viral Inhibition of the SARS-CoV2 E Protein Ion Channel (joint with St Andrews University and Trinity College Dublin)
Zachariae, U.
Biotechnology and Biological Sciences Research Council
8/02/21 → 7/08/22
Project: Research
Machine Learning Methods to Re-Annotate Histone Modifications with Locus-specific Functional Classification (Future Leaders Fellowship)
Owen-Hughes, T. & Schweikert, G.
Medical Research Council
1/11/20 → 31/10/24
Project: Research

16817 Citations
61 h-Index
191 Article
14 Letter
6 Review article
3 Chapter
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2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing
Parker, M. T., Knop, K., Barton, G. J. & Simpson, G. G., 1 Mar 2021, In: Genome Biology. 22, 1, 24 p., 72.
Research output: Contribution to journal › Article › peer-review

Open Access
File
1 Citation (Scopus)

16 Downloads (Pure)
Alignment of Biological Sequences with Jalview
Procter, J. B., Carstairs, G. M., Soares, B., Mourão, K., Ofoegbu, T. C., Barton, D., Lui, L., Menard, A., Sherstnev, N., Roldan-Martinez, D., Duce, S., Martin, D. M. A. & Barton, G. J., 2021, Multiple Sequence Alignment: Methods and Protocols. Katoh, K. (ed.). 1 ed. New York: Humana Press, p. 203-224 22 p. (Methods in Molecular Biology; vol. 2231).
Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

Open Access
File
2 Citations (Scopus)

11 Downloads (Pure)
An antibiotic-resistance conferring mutation in a neisserial porin: Structure, ion flux, and ampicillin binding
Bartsch, A., Ives, C., Kattner, C., Pein, F., Diehn, M., Tanabe, M., Munk, A., Zachariae, U., Steinem, C. & Llabres, S., 1 Jun 2021, In: Biochimica et Biophysica Acta - Biomembranes. 1863, 6, 11 p., 183601.
Research output: Contribution to journal › Article › peer-review

Open Access
File
27 Downloads (Pure)

High resolution imaging reveals heterogeneity in chromatin states between cells that is not inherited through cell division.
Owen-Hughes, T. (Creator), Dickerson, D. (Creator), Gierlinski, M. (Contributor), Singh, V. (Contributor), Kitamura, E. (Contributor), Ball, G. (Contributor) & Tanaka, T. (Contributor), University of Dundee, 2016
DOI: 10.17867/10000102, http://idr-demo.openmicroscopy.org/webclient/?show=project-151
Dataset

The Brian Cox Prize for Excellence in Public Engagement with Research: Project of the Year
Duce, Suzanne (Recipient), 15 Jan 2020
Prize: Prize (including medals and awards)
Winner ISCB Art in Science Competition 2017
Cole, Christian (Recipient) & Schurch, N. (Recipient), 25 Jul 2017
Prize: Prize (including medals and awards)

2 Other
1 Festival/Exhibition
1 Public engagement and outreach - public lecture/debate/seminar

Discovery Days 2021
Ulrich Zachariae (Speaker)
13 Jan 2021 → 15 Jan 2021
Activity: Other activity types › Public engagement and outreach - public lecture/debate/seminar
Women in STEM week on Dundee Science Centre Home Learning Programme
Annalu Waller (Contributor), Anne Keitel (Contributor), Aurora Sicilia Aguilar (Contributor), Carmen Escudero-Martinez (Contributor), Caroline Erolin (Contributor), Claire Fitton (Contributor), Hilary Arsenault (Contributor), Holly Fleming (Contributor), Julieta Gómez García-Donas (Contributor), Karen Petrie (Contributor), Margi Vilnay (Contributor), Nicola Morrice (Contributor), Senga Robertson-Albertyn (Contributor), Suzanne Duce (Contributor), Labake Odushegun (Contributor), Trisha Mcallister (Contributor), Veronica Pravata (Contributor), Heather Doran (Member), Ailsa Mackintosh (Member), Thibault Rosazza (Member), Caitlin Macdonald (Member), Amy Cameron (Organiser), Matthew Jarron (Contributor), Caroline Brown (Contributor) & James Gemmill (Contributor)
8 Mar 2021
Activity: Other activity types › Other

File
Newsletter article: A Secondary School Bioinformatics Workbook for Visualizing DNA, RNA and Proteins
Suzanne Duce (Contributor)
Jul 2020
Activity: Other activity types › Other

Analysis and Prediction of Protein Structure
Author: Barber, J., 2005
Supervisor: Barton, G. (Supervisor)
Student thesis: Doctoral Thesis › Doctor of Philosophy
Analysis of variation in protein domain families and interfaces
Author: Marques Madeira, F. M., 2016
Supervisor: Barton, G. (Supervisor)
Student thesis: Doctoral Thesis › Doctor of Philosophy

File
Classification and Functional Annotation of Eukaryotic Protein Kinases
Author: Miranda-Saavedra, D., 2007
Supervisor: Barton, G. (Supervisor)
Student thesis: Doctoral Thesis › Doctor of Philosophy