Computational Biology

Search results

• Genome sequence data and genome annotation data

  Stanley-Wall, N. (Creator), Kalamara, M. (Creator) & Abbott, J. (Creator), University of Dundee, 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB43128

  Dataset

• Mutant screen of early flowering Arabidopsis EMS mutants with increased MAF2 intron retention

  Parker, M. (Creator), Soanes, B. K. (Creator), Kusakina, J. (Creator), Larrieu, A. (Creator), Knop, K. (Creator), Joy, N. (Creator), Breidenbach, F. (Creator), Sherwood, A. (Creator), Barton, G. (Creator), Fica, S. M. (Creator), Davies, B. H. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 5 Apr 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB51468

  Dataset

• Nanopore direct RNA sequencing of Col-0 and fio1-3 mutant Arabidopsis

  Parker, M. (Creator), Soanes, B. K. (Creator), Kusakina, J. (Creator), Larrieu, A. (Creator), Knop, K. (Creator), Joy, N. (Creator), Breidenbach, F. (Creator), Sherwood, A. (Creator), Barton, G. (Creator), Fica, S. M. (Creator), Davies, B. H. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 5 Apr 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB51364

  Dataset

• High resolution imaging reveals heterogeneity in chromatin states between cells that is not inherited through cell division.

  Owen-Hughes, T. (Creator), Dickerson, D. (Creator), Gierlinski, M. (Contributor), Singh, V. (Contributor), Kitamura, E. (Contributor), Ball, G. (Contributor) & Tanaka, T. (Contributor), University of Dundee, 2016

  DOI: 10.17867/10000102, http://idr-demo.openmicroscopy.org/webclient/?show=project-151

  Dataset

• Illumina RNA-Seq of FPA mutants and overexpressors.

  Parker, M. (Creator), Knop, K. (Creator), Zacharaki, V. (Creator), Sherwood, A. (Creator), Tome, D. (Creator), Yu, X. (Creator), Martin, P. (Creator), Beynon, J. (Creator), Michaels, S. (Creator), Barton, G. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 20 Nov 2020

  https://www.ebi.ac.uk/ena/browser/view/PRJEB41455

  Dataset

• Illumina RNA sequencing of Col-0 and fio1-3 mutant Arabidopsis

  Parker, M. (Creator), Soanes, B. K. (Creator), Kusakina, J. (Creator), Larrieu, A. (Creator), Knop, K. (Creator), Joy, N. (Creator), Breidenbach, F. (Creator), Sherwood, A. (Creator), Barton, G. (Creator), Fica, S. M. (Creator), Davies, B. H. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 5 Apr 2022

  https://www.ebi.ac.uk/ena/browser/view/PRJEB51363

  Dataset

• Nanopore direct RNA sequencing of FPA mutants and overexpressors

  Parker, M. (Creator), Knop, K. (Creator), Zacharaki, V. (Creator), Sherwood, A. (Creator), Tome, D. (Creator), Yu, X. (Creator), Martin, P. (Creator), Beynon, J. (Creator), Michaels, S. (Creator), Barton, G. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 20 Nov 2020

  https://www.ebi.ac.uk/ena/browser/view/PRJEB41451

  Dataset

• Helicos direct RNA sequencing of FPA mutants and overexpressors

  Parker, M. (Creator), Knop, K. (Creator), Zacharaki, V. (Creator), Barton, G. (Creator) & Simpson, G. (Creator), Zenodo, 20 Dec 2020

  DOI: 10.5281/zenodo.4309752

  Dataset

• Study of genome-wide alternative polyadenylation in A. thaliana

  Sherstnev, A. (Creator), Duc, C. (Creator), Cole, C. (Creator), Zacharaki, V. (Creator), Hornyik, C. (Creator), Ozsolak, F. (Creator), Milos, P. M. (Creator), Barton, G. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 18 Jan 2012

  http://www.ebi.ac.uk/ena/data/view/ERP001018

  Dataset

• Nanopore direct RNA sequencing of the Arabidopsis RNA exosome mutant hen2-2

  Parker, M. (Creator), Knop, K. (Creator), Barton, G. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 16 Dec 2020

  https://www.ebi.ac.uk/ena/browser/view/PRJEB41381

  Dataset

• bartongroup/FRAGSYS: Second release

  Utgés, J. S. (Creator), Zenodo, 1 Feb 2024

  DOI: 10.5281/zenodo.10606595, https://zenodo.org/records/10606595

  Dataset

• Nanopore Direct RNA Sequencing Maps the Arabidopsis m6A Epitranscriptome

  Parker, M. (Creator), Knop, K. (Creator), Sherwood, A. (Creator), Schurch, N. (Creator), Mackinnon, K. (Creator), Gould, P. (Creator), Hall, A. (Creator), Barton, G. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 28 May 2019

  https://www.ebi.ac.uk/ena/data/view/PRJEB32782

  Dataset

• Proteomic analysis of FPA interactors

  Parker, M. (Creator), Knop, K. (Creator), Zacharaki, V. (Creator), Sherwood, A. (Creator), Tome, D. (Creator), Yu, X. (Creator), Martin, P. (Creator), Beynon, J. (Creator), Michaels, S. (Creator), Barton, G. (Creator) & Simpson, G. (Creator), PRoteomics IDEntifications Database, 16 Dec 2020

  https://www.ebi.ac.uk/pride/archive/projects/PXD022684

  Dataset