Research output per year
Research output per year
Research output
- 13 results
Search results
-
2025
The Trypanosoma cruzi cell atlas: a single-cell resource for understanding parasite population heterogeneity and differentiation
Laidlaw, R., Garcia Sanchez, M., Da Silva Pacheco, J., De Sousa Paradela, L., Otto, T. D. (Lead / Corresponding author) & De Rycker, M. (Lead / Corresponding author), 17 Jan 2025, BioRxiv, 44 p.Research output: Working paper/Preprint › Preprint
File3 Downloads (Pure) -
2024
Impact of sample size and tissue relevance on T2D gene identification
Davtian, D. (Lead / Corresponding author), Dupuis, T., Mansour Aly, D., Atabaki Pasdar, N., Walker, M., Franks, P. W., Rutters, F., Im, H. K., Pearson, E. R., van de Bunt, M., Vinuela, A. (Lead / Corresponding author) & Brown, A. A. (Lead / Corresponding author), 2 Nov 2024, medRxiv, 19 p.Research output: Working paper/Preprint › Preprint
File10 Downloads (Pure) -
Paradoxical Activation of GCN2 by ATP-competitive inhibitors via allosteric activation and autophosphorylation
Neill, G., Vinciauskaite, V., Paul, M., Gilley, R., Cook, S. J. & Masson, G. (Lead / Corresponding author), 15 Aug 2024, BioRxiv, 24 p.Research output: Working paper/Preprint › Preprint
File116 Downloads (Pure) -
Revisiting the Plasmodium falciparum druggable genome using predicted structures and data mining
Godinez-Macias, K. P., Chen, D., Wallis, J. L., Siegel, M. G., Adam, A., Bopp, S., Carolino, K., Coulson, L. B., Durst, G., Thathy, V., Esherick, L., Farringer, M. A., Flannery, E. L., Forte, B., Liu, T., Magalhaes, L. G., Gupta, A. K., Istvan, E. S., Jiang, T. & Kumpornsin, K. & 29 others, , 26 Nov 2024, Research Square, 32 p.Research output: Working paper/Preprint › Preprint
Open Access -
2023
Conformational preferences of inosine and its methyl derivatives: Comparison of the AMBER derived force field parameters and reparameterization of the glycosidic torsion parameters
Dutta, N., Deb, I., Sarzynska, J. & Lahiri, A. (Lead / Corresponding author), 20 Jan 2023, Research Square, 24 p.Research output: Working paper/Preprint › Preprint
Open Access -
How robust is the ligand binding transition state?
Bose, S., Lotz, S. D., Deb, I., Shuck, M., Lee, K. S. S. & Dickson, A. (Lead / Corresponding author), 14 Aug 2023, Cambridge: ChemRxiv, 36 p.Research output: Working paper/Preprint › Preprint
Open Access -
Predicting nearest neighbor free energies of modified RNA with LIE: Results for pseudouridine and N1-methylpseudouridine within RNA duplexes
Dutta, N., Sarzynska, J., Deb, I. & Lahiri, A. (Lead / Corresponding author), 17 Aug 2023, Cambridge: ChemRxiv, 10 p.Research output: Working paper/Preprint › Preprint
Open Access -
Structural and thermodynamic consequences of base pairs containing pseudouridine and N1-methylpseudouridine in RNA duplexes
Dutta, N., Deb, I., Sarzynska, J. & Lahiri, A. (Lead / Corresponding author), 22 Mar 2023, BioRxiv, 34 p.Research output: Working paper/Preprint › Preprint
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2022
Experiences with managing data parallel computational workflows for High-throughput Fragment Molecular Orbital (FMO) Calculations
Wannipurage, D., Deb, I., Abeysinghe, E., Pamidighantam, S., Marru, S., Pierce, M. & Frank, A. T., 28 Jan 2022, arXiv, 5 p.Research output: Working paper/Preprint › Preprint
Open Access -
N1-Methylpseudouridine and pseudouridine modifications modulate mRNA decoding during translation
Monroe, J. G., Mitchell, L., Deb, I., Roy, B., Frank, A. T. & Koutmou, K. (Lead / Corresponding author), 14 Jun 2022, BioRxiv, 10 p.Research output: Working paper/Preprint › Preprint
Open Access -
2021
Structural basis for control of bacterial RNA polymerase pausing by a riboswitch and its ligand
Walter, N. (Lead / Corresponding author), Chauvier, A., Porta, J., Deb, I., Ellinger, E., Frank, A. & Ohi, M., 29 Dec 2021, Research Square, 32 p.Research output: Working paper/Preprint › Preprint
Open Access -
2019
Accelerating Dissociative Events in Molecular Dynamics Simulations by Selective Potential Scaling
Deb, I. & Frank, A. T. (Lead / Corresponding author), 19 Feb 2019, BioRxiv, 13 p.Research output: Working paper/Preprint › Preprint
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2018
Proteus: an R package for downstream analysis of MaxQuant output
Gierlinski, M., Gastaldello, F., Cole, C. & Barton, G., 20 Sept 2018, Cold Spring Harbor Laboratory: BioRxiv, 10 p.Research output: Working paper/Preprint › Preprint
Open AccessFile1239 Downloads (Pure)