Gene Regulation and Expression

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Research Output 1985 2019

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Chapter (peer-reviewed)
2019

Methods to analyze STUbL activity

Branigan, E., Plechanovová, A. & Hay, R. T., 3 Jan 2019, Methods in Enzymology. Elsevier, Vol. 64/8. p. 257-280 24 p. (Methods in Enzymology; vol. 618).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Ubiquitin-Protein Ligases
Ubiquitin
Genes
Assays
Substrates
2018

Biochemical and Structural Properties of Fungal Holliday Junction-Resolving Enzymes

Liu, Y., Freeman, A., Déclais, A-C., Gartner, A. & Lilley, D. M. J., 2018, Mechanisms of DNA Recombination and Genome Rearrangements: Methods to Study Homologous Recombination. Spies, M. & Malkova, A. (eds.). Academic Press, Vol. 600. p. 543-568 26 p. (Methods in Enzymology; vol. 600).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Cruciform DNA
Structural properties
Enzymes
Chaetomium
DNA
2017
2 Citations (Scopus)

Chromatin Replication and Histone Dynamics

Alabert, C., Jasencakova, Z. & Groth, A., 2017, DNA Replication : From Old Principles to New Discoveries. Masai, H. & Foiani, M. (eds.). Singapore, p. 311-333 23 p. (Advances in Experimental Medicine and Biology; vol. 1042).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Histones
Chromatin
DNA Replication
Nucleosomes
Genomic Instability
2016

Analysis of mass spectrometry data for nucleolar proteomics experiments

Nicolas, A., Bensaddek, D. & Lamond, A. I., 2016, The nucleolus: methods and protocols. Németh, A. (ed.). New York: Springer , p. 263-276 14 p. (Methods in molecular biology; vol. 1455).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Proteomics
Mass Spectrometry
Workflow
Proteins
Research Personnel
4 Citations (Scopus)

Cell cycle synchronization in xenopus egg extracts

Gillespie, P. J., Neusiedler, J., Creavin, K., Chadha, G. S. & Blow, J., 2016, Cell cycle oscillators: methods and protocols. Coutts, A. S. & Weston, L. (eds.). New York: Humana Press, p. 101-147 47 p. (Methods in Molecular Biology; vol. 1342).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Xenopus
Ovum
Cell Cycle
Eukaryotic Cells
Cell-Free System
2 Citations (Scopus)

Imaging of the cytoskeleton using live and fixed Drosophila tissue culture cells

Applewhite, D. A., Davis, C. A., Griffis, E. R. & Quintero, O. A., 2016, Cytoskeleton methods and protocols. Gavin, R. H. (ed.). 3rd ed. Humana Press, p. 83-97 15 p. (Methods in molecular biology; vol. 1365).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

RNA Interference
Cytoskeleton
Drosophila
Cell Culture Techniques
Fluorescence Microscopy
3 Citations (Scopus)

Quantitative proteomic analysis of the human nucleolus

Bensaddek, D., Nicolas, A. & Lamond, A. I., 2016, The nucleolus: methods and protocols. Németh, A. (ed.). New York: Springer , p. 249-262 14 p. (Methods in molecular biology; vol. 1455).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Proteome
Proteomics
Mass Spectrometry
Workflow
Cellular Structures
5 Citations (Scopus)

Tools to study SUMO conjugation in Caenorhabditis elegans

Pelisch, F. & Hay, R. T., 2016, SUMO: methods and protocols. Rodriguez, M. S. (ed.). New York: Springer , p. 233-256 24 p. (Methods in molecular biology; vol. 1475).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Sumoylation
Caenorhabditis elegans
Biochemistry
Ubiquitin-Protein Ligases
Cell Biology
2012
6 Citations (Scopus)

Detection and quantitation of SUMO chains by mass spectrometry

Matic, I. & Hay, R. T., 1 Jan 2012, Ubiquitin family modifiers and the proteasome: reviews and protocols. Dohmen, R. J. & Scheffner, M. (eds.). Humana Press, p. 239-247 9 p. (Methods in molecular biology; vol. 832).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Ubiquitin
Mass Spectrometry
Polymers
Isotope Labeling
Workflow
3 Citations (Scopus)

Isolation of NEDDylated proteins in human cells

Leidecker, O. & Xirodimas, D. P., 2012, Ubiquitin family modifiers and the proteasome: reviews and protocols. Dohmen, R. J. & Scheffner, M. (eds.). Humana Press, p. 133-140 8 p. (Methods in Molecular Biology; vol. 832).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Ubiquitin
Biological Phenomena
Proteins
Post Translational Protein Processing
Growth and Development
51 Citations (Scopus)

Methods for studying the DNA damage response in the Caenorhabdatis elegans germ line

Craig, A. L., Moser, S. C., Bailly, A. P. & Gartner, A., 2012, Caenorhabditis elegans: cell biology and physiology. Rothman, J. H. & Singson, A. (eds.). Academic Press, p. 321-352 32 p. (Methods in Cell Biology; vol. 107).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Germ Cells
DNA Damage
Caenorhabditis elegans
Apoptosis
Cell Cycle Checkpoints
3 Citations (Scopus)

Sulfyhydryl-reactive site-directed cross-linking as a method for probing the tetrameric structure of histones H3 and H4

Bowman, A. & Owen-Hughes, T., 2012, Chromatin remodeling: methods and protocols. Morse, R. H. (ed.). Humana Press, p. 373-387 15 p. (Methods in Molecular Biology; vol. 833).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Histones
Catalytic Domain
Proteins
Chromatin
Histone Chaperones
2010

p53 and immunity

Narayan, V., Meek, S. E. M. & Ball, K., 2010, p53. Ayed, A. & Hupp, T. (eds.). Austin, TX: Landes Bioscience, p. 178-186 9 p. (Molecular Biology Intelligence Unit; vol. 1).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Immunity
Tumor Suppressor Protein p53
Cell Division
DNA Damage
Carcinogenesis
2009
16 Citations (Scopus)

FRET-based in vitro assays for the analysis of SUMO protease activities

Tatham, M. H. & Hay, R. T., 2009, SUMO protocols. Ulrich, H. D. (ed.). Humana Press, Vol. 6. p. 253-268 16 p. (Methods in Molecular Biology; vol. 497).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Peptide Hydrolases
Small Ubiquitin-Related Modifier Proteins
SUMO-1 Protein
Sumoylation
Proteins
4 Citations (Scopus)

Live cell imaging of kinetochore capture by microtubules in budding yeast

Tanaka, K. & Tanaka, T. U., 2009, Mitosis: methods and protocols. McAinsh, A. D. (ed.). Humana Press, p. 233-242 10 p. (Methods in Molecular Biology; vol. 545).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Kinetochores
Saccharomycetales
Microtubules
Centromere
Spindle Poles
2007
1 Citation (Scopus)

Proteins interacting with Saccharomyces cerevisiae type 1 protein phosphatase catalytic subunit identified by single-step affinity purification and mass spectrometry

Walsh, E. P., Lamont, D., Beattie, K. A. & Stark, M. J. R., 2007, Protein phosphatase protocols. Moorhead, G. (ed.). Humana Press, p. 235-246 12 p. (Methods in Molecular Biology; vol. 365).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Saccharomyces cerevisiae Proteins
Phosphoprotein Phosphatases
Mass Spectrometry
Catalytic Domain
Yeasts
37 Citations (Scopus)

Quantitative fluorescence microscopy and image deconvolution

Swedlow, J. R., 2007, Digital microscopy. Sluder, G. & Wolf, D. E. (eds.). 3rd ed. Amsterdam: Academic Press, p. 447-465 19 p. (Methods in Cell Biology; vol. 81).

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Fluorescence Microscopy
Photons
Light