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  • 2024

    Infrared Spectroscopic Characterization of Some Synthetic Glycosides with Chromogenic Groups for Detection of Exo-Glycosidase Activity

    García-Pérez, A. L., Vázquez-Vuelvas, O. F., Guzmán-Pedraza, R., Saenz-Galind, A., Macias-Garbett, R. & Contreras-Esquivel, J. C., 9 Apr 2024, Bioresources and Bioprocess in Biotechnology for a Sustainable Future. Sepúlveda Torre, L., Contreras-Esquivel, J. C., Abraham, A. R. & Haghi, A. K. (eds.). Apple Academic Press, p. 271-290 20 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

  • Monitoring Real-Time Temperature Dynamics of a Short RNA Hairpin Using Förster Resonance Energy Transfer and Circular Dichroism

    Balcerowicz, M. (Lead / Corresponding author), Wigge, P. A., Di Antonio, M. (Lead / Corresponding author) & Chung, B. (Lead / Corresponding author), 2024, Thermomorphogenesis: Methods and Protocols. Chen, M. (ed.). 1 ed. New York: Humana Press, Vol. 2795. p. 149-158 10 p. (Methods in Molecular Biology; vol. 2795).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

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    14 Downloads (Pure)
  • 2023

    Cell-to-Cell Connectivity Assays for the Analysis of Cytoskeletal and Other Regulators of Plasmodesmata

    Barr, Z. & Tilsner, J. (Lead / Corresponding author), 2023, The Plant Cytoskeleton: Methods and Protocols. Hussey, P. J. & Wang, P. (eds.). New York: Humana Press, p. 193-202 10 p. (Methods in Molecular Biology; vol. 2604).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

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    1 Citation (Scopus)
    72 Downloads (Pure)
  • 2022

    Experimental Design for Time-Series RNA-Seq Analysis of Gene Expression and Alternative Splicing

    Tzioutziou, N. A., James, A. B., Guo, W., Calixto, C. P. G., Zhang, R., Nimmo, H. G. & Brown, J. W. S. (Lead / Corresponding author), 2022, Plant Circadian Networks: Methods and Protocols. Staiger, D., Davis, S. & Melaragno Davis, A. (eds.). New York: Humana Press, p. 173-188 16 p. (Methods in Molecular Biology; vol. 2398).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

    2 Citations (Scopus)

  • Post-transcriptional Gene Silencing Using Virus-Induced Gene Silencing to Study Plant Gametogenesis in Tomato

    Wang, Z. (Lead / Corresponding author), Wang, X. Y., Martinho, C. & Baulcombe, D. C., 24 Apr 2022, Plant Gametogenesis: Methods and Protocols. Lambing, C. (ed.). 1 ed. New York: Humana New York, NY, p. 201-212 12 p. (Methods in Molecular Biology (Clifton, N.J.); vol. 2484).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

    3 Citations (Scopus)
  • 2021

    Identification of Resistance Genes Using Diagnostic R-Gene Enrichment Sequencing (dRenSeq)

    Armstrong, M. & Hein, I. (Lead / Corresponding author), 2021, Solanum tuberosum: Methods and Protocols. Dobnik, D., Gruden, K., Ramšak, Ž. & Coll, A. (eds.). 1 ed. New York: Humana Press, p. 213-219 7 p. (Methods in Molecular Biology; vol. 2354).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

  • Yeast Two-Hybrid Screening for Identification of Protein-Protein Interactions in Solanum tuberosum

    McLellan, H., Armstrong, M. R. & Birch, P. R. J. (Lead / Corresponding author), 2021, Solanum tuberosum: Methods and Protocols. Dobnik, D., Gruden, K., Ramšak, Ž. & Coll, A. (eds.). 1 ed. New York: Humana Press, p. 95-110 16 p. (Methods in Molecular Biology; vol. 2354).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

    4 Citations (Scopus)
  • 2020

    A Modular Tray Growth System for Barley

    Arrieta, M. (Lead / Corresponding author), Colas, I., Macaulay, M., Waugh, R. & Ramsay, L., 2020, Plant Meiosis: Methods and Protocols. Pradillo, M. & Heckmann, S. (eds.). New York: Humana Press, p. 367-379 13 p. (Methods in Molecular Biology; vol. 2061).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

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    4 Citations (Scopus)
    202 Downloads (Pure)

  • Following the Formation of Synaptonemal Complex Formation in Wheat and Barley by High-Resolution Microscopy

    Darrier, B., Arrieta, M., Mittmann, S. U., Sourdille, P., Ramsay, L., Waugh, R. & Colas, I. (Lead / Corresponding author), 2020, Plant Meiosis: Methods and Protocols. Pradillo, M. & Heckmann, S. (eds.). New York: Humana Press, p. 207-215 9 p. (Methods in Molecular Biology; vol. 2061).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

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    5 Citations (Scopus)
    236 Downloads (Pure)
  • 2019

    A Practical Guide to Barley Crossing

    Thomas, W. T. B. (Lead / Corresponding author), Bull, H., Booth, A., Hamilton, R., Forster, B. P. & Franckowiak, J. D., 1 Jan 2019, Barley: Methods and Protocols. Harwood, W. A. (ed.). New York: Humana Press, Vol. 1900. p. 21-36 16 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

    4 Citations (Scopus)

  • Determination of Protein S-Acylation State by Enhanced Acyl-Switch Methods

    Hurst, C. H., Turnbull, D. & Hemsley, P. A. (Lead / Corresponding author), 2019, Protein Lipidation: Methods and Protocols. Linder, M. E. (ed.). New York: Humana Press, Vol. 2009. p. 3-11 9 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

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    2 Citations (Scopus)
    314 Downloads (Pure)

  • Exome Capture for Variant Discovery and Analysis in Barley

    Bayer, M. (Lead / Corresponding author), Morris, J. A., Booth, C., Booth, A., Uzrek, N., Russell, J. R., Waugh, R. & Hedley, P. E., 2019, Barley: Methods and Protocols. Harwood, W. A. (ed.). New York: Humana Press, Vol. 1900. p. 283-310 28 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

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    7 Citations (Scopus)
    353 Downloads (Pure)

  • High-Resolution RT-PCR Analysis of Alternative Barley Transcripts

    Simpson, C. G. (Lead / Corresponding author), Fuller, J., Rapazote-Flores, P., Mayer, C. D., Calixto, C. P. G., Milne, L., Hedley, P. E., Booth, C., Waugh, R. & Brown, J. W. S., 2019, Barley: Methods and Protocols. Harwood, W. A. (ed.). New York: Humana Press, Vol. 1900. p. 269-281 13 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

    Open Access
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    2 Citations (Scopus)
    292 Downloads (Pure)

  • Preparation of Barley Pollen Mother Cells for Confocal and Super Resolution Microscopy

    Mittmann, S., Arrieta, M., Ramsay, L., Waugh, R. & Colas, I. (Lead / Corresponding author), 2019, Barley: Methods and Protocols. Harwood, W. A. (ed.). New York: Humana Press, Vol. 1900. p. 167-179 13 p. (Methods in Molecular Biology).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

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    4 Citations (Scopus)
    294 Downloads (Pure)
  • 2018

    Barley Inflorescence Architecture

    McKim, S. (Lead / Corresponding author), Koppolu, R. & Schnurbusch, T., 19 Aug 2018, The Barley Genome. Stein, N. & Muehlbauer, G. J. (eds.). 1 ed. Switzerland: Springer , p. 171-208 38 p. (Compendium of Plant Genomes).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

  • 2016

    Assessing drought responses using thermal infrared imaging

    Prashar, A. (Lead / Corresponding author) & Jones, H. G., 2016, Environmental responses in plants: methods and protocols. Duque, P. (ed.). New York: Springer , p. 209-219 11 p. (Methods in molecular biology; vol. 1398).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

    32 Citations (Scopus)

  • Monitoring alternative splicing changes in Arabidopsis circadian clock genes

    Simpson, C. G. (Lead / Corresponding author), Fuller, J., Calixto, C. P. G., McNicol, J., Booth, C., Brown, J. W. S. & Staiger, D., 2016, Environmental responses in plants: methods and protocols. Duque, P. (ed.). New York: Springer , p. 119-132 14 p. (Methods in molecular biology; vol. 1398).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

    10 Citations (Scopus)

  • Plant-microbiota interactions as a driver of the mineral turnover in the Rhizosphere

    Alegria Terrazas, R., Giles, C., Paterson, E., Robertson-Albertyn, S., Cesco, S., Mimmo, T., Pii, Y. & Bulgarelli, D. (Lead / Corresponding author), 2016, Advances in Applied Microbiology. Sariaslani, S. & Gadd, G. M. (eds.). Academic Press, Vol. 95. p. 1-67 67 p.

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

    86 Citations (Scopus)

  • Tablet: visualizing next-generation sequence assemblies and mappings

    Milne, I. (Lead / Corresponding author), Bayer, M., Stephen, G., Cardle, L. & Marshall, D., 2016, Plant bioinformatics: methods and protocols. Edwards, D. (ed.). New York: Springer , p. 253-268 16 p. (Methods in molecular biology; vol. 1374).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

    39 Citations (Scopus)
  • 2015

    Detection of the bacterial potato pathogens Pectobacterium and Dickeya spp. Using conventional and real-time PCR

    Humphris, S. N. (Lead / Corresponding author), Cahill, G., Elphinstone, J. G., Kelly, R., Parkinson, N. M., Pritchard, L., Toth, I. K. & Saddler, G. S., 2015, Plant pathology: techniques and protocols. Lacomme, C. (ed.). 2nd ed. New York: Humana Press, p. 1-16 16 p. (Methods in molecular biology; vol. 1302).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

    30 Citations (Scopus)
  • 2014

    In vivo protein-protein interaction studies with BiFC: conditions, cautions, and caveats

    Boevink, P., McLellan, H., Bukharova, T., Engelhardt, S. & Birch, P., 15 Feb 2014, Plant-pathogen interactions: methods and protocols. Birch, P., Jones, J. T. & Bos, J. I. B. (eds.). New York: Humana Press, p. 81-90 10 p. (Methods in Molecular Biology; vol. 1127).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

    11 Citations (Scopus)

  • Leaf-disc assay based on transient over-expression in Nicotiana benthamiana to allow functional screening of candidate effectors from aphids

    Rodriguez, P. A., Hogenhout, S. A. & Bos, J. I. B., 2014, Plant-pathogen interactions: methods and protocols. Birch, P., Jones, J. T. & Bos, J. I. B. (eds.). Humana Press, p. 137-143 7 p. (Methods in Molecular Biology; vol. 1127).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

    4 Citations (Scopus)
  • 2013

    Assaying protein s-acylation in plants

    Hemsley, P. A., 2013, G protein-couples receptor signaling in plants: methods and protocols. Running, M. P. (ed.). Humana Press, p. 141-146 6 p. (Methods in Molecular Biology; vol. 1043).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

    7 Citations (Scopus)
  • 2012

    The application of LTR retrotransposons as molecular markers in plants

    Schulman, A. H., Flavell, A. J., Paux, E. & Ellis, T. H. N., 2012, Mobile genetic elements: protocols and genomic applications. Walker, J. M. & Bigot, Y. (eds.). 2nd ed. New York: Humana Press, p. 115-153 39 p. (Methods in Molecular Biology; vol. 859).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

    52 Citations (Scopus)
  • 2011

    Imaging fluorescently tagged Phytophthora effector proteins inside infected plant tissue

    Boevink, P. C., Birch, P. R. & Whisson, S. C., 2011, Plant immunity: methods and protocols. McDowell, J. D. (ed.). New York: Humana Press, p. 195-209 15 p. (Methods in Molecular Biology; vol. 712).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

    8 Citations (Scopus)
  • 2010

    Reverse engineering gene regulatory networks related to quorum sensing in the plant pathogen Pectobacterium atrosepticum.

    Lin, K., Husmeier, D., Dondelinger, F., Mayer, C. D., Liu, H., Pritchard, L., Salmond, G. P. C., Toth, I. K. & Birch, P. R. J., 2010, Computational biology. Fenyo, D. (ed.). New York: Humana Press, p. 253-281 29 p. (Methods in Molecular Biology; vol. 673).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

    3 Citations (Scopus)
  • 2008

    Role of plant virus movement proteins

    Taliansky, M., Torrance, L. & Kalinina, N. O., 2008, Plant virology protocols: from viral sequence to protein function. Foster, G. D., Johansen, I. E., Hong, Y. & Nagy , P. D. (eds.). Humana Press, p. 33-54 22 p. (Methods in Molecular Biology; vol. 451).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

    70 Citations (Scopus)

  • Yeast two-hybrid assay to identify host-virus interactions

    MacFarlane, S. A. & Uhrig, J. F., 2008, Plant virology protocols: from viral sequence to protein function. Foster , G. D., Johansen, I. E., Hong, Y. & Nagy, P. D. (eds.). Humana Press, p. 649-672 24 p. (Methods in molecular biology; vol. 451).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed)

    8 Citations (Scopus)
  • 2007

    Screening of cDNA libraries on glass slide microarrays

    Berger, D. K., Crampton, B. G., Hein, I. & Vos, W., 2007, Microarrays: Applications and Data Analysis. Rampal, J. B. (ed.). 2nd ed. Humana Press, Vol. 2. p. 177-203 27 p. (Methods in Molecular Biology (Clifton, N.J.); vol. 382).

    Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

    4 Citations (Scopus)