School of Life Sciences

  • United Kingdom

Research Output 1968 2020

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2019

2D-DIGE as a tool in neuroproteomics

Weiland, F., 2019, Neuroproteomics. Li, K. W. (ed.). New York: Humana Press Inc., p. 143-159 17 p. (Neuromethods; vol. 146).

Research output: Chapter in Book/Report/Conference proceedingChapter

Two-Dimensional Difference Gel Electrophoresis
Neurology
Proteome
Electrophoresis
Protein Isoforms

Enzymatic preparation of monoubiquitinated FANCD2 and FANCI proteins

Chaugule, V. K., Arkinson, C., Toth, R. & Walden, H., 2019, Methods in Enzymology. United States: Academic Press Inc., Vol. 618. p. 73-104 32 p. (Methods in Enzymology; vol. 618).

Research output: Chapter in Book/Report/Conference proceedingChapter

Fanconi Anemia Complementation Group D2 Protein
DNA Repair
Repair
Ubiquitination
DNA

Genetic Manipulation of Cryptosporidium parvum with CRISPR/Cas9

Sateriale, A., Pawlowic, M., Vinayak, S., Brooks, C. & Striepen, B., 27 Aug 2019, Cryptosporidium. Mead, J. R. & Arrowood, M. J. (eds.). New York: Humana Press, p. 219-228 10 p. (Methods in Molecular Biology; vol. 2052).

Research output: Chapter in Book/Report/Conference proceedingChapter

Clustered Regularly Interspaced Short Palindromic Repeats
Cryptosporidium parvum
Transfection
Infection
1 Citation (Scopus)

Metal bioavailability and the soil microbiome

Sullivan, T. S. & Gadd, G. M., 2019, Advances in Agronomy. Sparks, D. L. (ed.). Academic Press Inc., Vol. 155. p. 79-120 42 p. (Advances in Agronomy).

Research output: Chapter in Book/Report/Conference proceedingChapter

bioavailability
metals
metal
soil
microbial communities
2018

BLASTmap: A Shiny-Based Application to Visualize BLAST Results as Interactive Heat Maps and a Tool to Design Gene-Specific Baits for Bespoke Target Enrichment Sequencing

Baker, K., Stephen, G., Strachan, S., Armstrong, M. & Hein, I., 2018, Plant Pathogenic Fungi and Oomycetes. Ma, W. & Wolpert, T. (eds.). New York: Humana Press, Vol. 1848. p. 199-206 8 p. (Methods in Molecular Biology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Hot Temperature
Genes
RNA Probes
Disease Resistance
DNA Probes
1 Citation (Scopus)

Photosynthesis and Metabolism of Seagrasses

Larkum, A. W. D., Pernice, M., Schliep, M., Davey, P., Szabo, M., Raven, J. A., Lichtenberg, M., Brodersen, K. E. & Ralph, P. J., 2018, Seagrasses of Australia: Structure, Ecology and Conservation. Larkum, A. W. D., Kendrick, G. A. & Ralph, P. J. (eds.). Switzerland: Springer International Publishing, p. 315-342 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

photosynthesis
uptake mechanisms
metabolism
carbon
epidermis (plant)

Theranostics in the Gut

Stewart, F., Mulvana, H., Nathke, I. & Cochran, S., 5 Jan 2018, Theranostics and Image Guided Drug Delivery. Thanou, M. (ed.). United Kingdom: Royal Society of Chemistry, p. 182-210 29 p. (Drug Discovery; no. 63).

Research output: Chapter in Book/Report/Conference proceedingChapter

Capsule Endoscopy
Gastrointestinal Tract
Ablation Techniques
Therapeutic Human Experimentation
Miniaturization

Thermal Imaging and Infrared Sensing in Plant Ecophysiology

Jones, H. G., 2018, Advances in Plant Ecophysiology Techniques. Sánchez-Moreiras, A. M. & Reigosa, M. J. (eds.). Switzerland: Springer International Publishing, p. 135-151 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

ecophysiology
image analysis
heat
plant-water relations
evapotranspiration
2017
2 Citations (Scopus)

Cyclic electron flow in cyanobacteria and eukaryotic algae

Larkum, A. W. D., Szabó, M., Fitzpatrick, D. & Raven, J. A., Dec 2017, Photosynthesis and Bioenergetics. Barber, J. & Ruban, A. V. (eds.). United Kingdom: World Scientific Publishing , p. 305-344 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

algae
Cyanobacteria
Algae
electrons
Electrons
1 Citation (Scopus)

European Lead Factory

Giordanetto, F., Jones, P., Nelson, A., Benningshof, J., Müller, G., Pannifer, A., Van Boeckel, S. & Tzalis, D., 13 Jun 2017, Comprehensive Medicinal Chemistry III. Chackalamannil, S., Rotella, D. P. & Ward, S. E. (eds.). Elsevier, p. 505-519 15 p. (Reference Module in Chemistry, Molecular Sciences and Chemical Engineering).

Research output: Chapter in Book/Report/Conference proceedingChapter

Industrial plants
Screening
Throughput
Industry
Intellectual property
2 Citations (Scopus)

Medicinal Chemistry of Hybrids for Neurodegenerative Diseases

Uliassi, E., Prati, F., Bongarzone, S. & Bolognesi, M. L., Apr 2017, Design of Hybrid Molecules for Drug Development. Decker, M. (ed.). Elsevier Inc., p. 259-277 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Neurodegenerative diseases
Prions
Ligands
Molecules
Pharmaceutical Preparations
1 Citation (Scopus)

Nickel in Microbial Physiology - From Single Proteins to Complex Trafficking Systems: Nickel Import/Export

Rodrigue, A., Albareda, M., Mandrand-Berthelot, M. A. & Palacios, J., 4 Apr 2017, The Biological Chemistry of Nickel: Biochemistry. Zamble, D., Rowinska-Zyrek, M. & Kozlowski, H. (eds.). 10 ed. Royal Society of Chemistry, Vol. 2017-January. p. 237-258 22 p. (RSC Metallobiology; vol. 2017-January, no. 10).

Research output: Chapter in Book/Report/Conference proceedingChapter

Physiology
Nickel
Large scale systems
Bacteria
Proteins
2016
3 Citations (Scopus)

Engineering Barriers to Infection by Undermining Pathogen Effector Function or by Gaining Effector Recognition

Ahmed, A. A., Mclellan, H., Aguilar, G. B., Hein, I., Thordal-Christensen, H. & Birch, P. R. J., 9 Jun 2016, Plant Pathogen Resistance Biotechnology. Collinge, D. B. (ed.). Wiley, p. 21-50 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pathogens
Plant Immunity
vpr Genes
Pattern Recognition Receptors
Infection
2 Citations (Scopus)

Protein phosphatases and DNA replication initiation

Stark, M. J. R., Hiraga, S. I. & Donaldson, A. D., 12 Feb 2016, The Initiation of DNA Replication in Eukaryotes. Kaplan, D. L. (ed.). Springer International Publishing, p. 461-477 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Phosphoprotein Phosphatases
DNA replication
DNA Replication
Phosphoric Monoester Hydrolases
Phosphorylation

Sialylation and immune surveillance of cancer by siglecs

Crocker, P. R. & Mohan, B., 27 Jan 2016, Glycosignals in Cancer: Mechanisms of Malignant Phenotypes. Springer Japan, p. 125-138 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Sialic Acid Binding Immunoglobulin-like Lectins
Tumors
N-Acetylneuraminic Acid
Cells
Glycosylation
2015

Pharmacological space

Hopkins, A. L., 2015, The practice of medicinal chemistry. Wermuth, C., Aldous, D., Raboisson, P. & Rognan, D. (eds.). 4th ed. Academic Press, p. 395-408 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Drug Discovery
Pharmacology
Essential Drugs
Epigenomics
Pharmaceutical Preparations
4 Citations (Scopus)

The hypersensitive response in PAMP- and effector-triggered immune responses

Feechan, A., Turnbull, D., Stevens, L. J., Engelhardt, S., Birch, P. R. J., Hein, I. & Gilroy, E. M., 2015, Plant Programmed Cell Death. Springer International Publishing, p. 235-268 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Steel
hypersensitive response
steel
Quenching
immune response
1 Citation (Scopus)

Time-lapse imaging of nuclear bodies

Hutten, S., Swift, S. & Lamond, A. I., 2015, Nuclear bodies and noncoding RNAs: methods and protocols. Nakagawa, S. & Hirose, T. (eds.). New York: Springer , p. 55-67 13 p. (Methods in molecular biology; vol. 1262).

Research output: Chapter in Book/Report/Conference proceedingChapter

Time-Lapse Imaging
Photobleaching
Microscopy
Molecular Dynamics Simulation
Cell Nucleus
2014
5 Citations (Scopus)

Exploiting barley genetic resources for genomewide association scans (GWAS)

Waugh, R., Flavell, A. J., Russell, J., Thomas, W. B., Ramsay, L. & Comadran, J., 1 Jan 2014, Genomics of Plant Genetic Resources: Volume 1. Managing, Sequencing and Mining Genetic Resources. Springer Netherlands, p. 237-254 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hordeum
genetic resources
Genes
barley
Multifactorial Inheritance
1 Citation (Scopus)

Genome-wide association scans (GWAS)

Waugh, R., Thomas, B., Flavell, A., Ramsay, L., Comadran, J. & Russell, J., 1 Jan 2014, Biotechnological Approaches to Barley Improvement. Kumlehn, J. & Stein, N. (eds.). Springer International Publishing, p. 345-365 21 p. (Biotechnology in Agriculture and Forestry; vol. 69).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genome-Wide Association Study
genome
Population
Gene Pool
Genetic Research
7 Citations (Scopus)

Genomic DNA library preparation for resistance gene enrichment and sequencing (RenSeq) in plants

Jupe, F., Chen, X., Verweij, W., Witek, K., Jones, J. D. G. & Hein, I., 15 Feb 2014, Plant-Pathogen Interactions. Birch, P., Jones, J. T. & Bos, J. I. B. (eds.). Springer , Vol. 1127. p. 291-303 13 p. (Methods in Molecular Biology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genomic Library
Gene Library
Genes
Plant Genes
Sequence Analysis

Illuminating the Phytophthora capsici Genome

Lamour, K., Hu, J., Lefebvre, V., Mudge, J., Howden, A. & Huitema, E., 23 Aug 2014, Genomics of Plant-Associated Fungi and Oomycetes: Dicot Pathogens. Dean, R. A., Lichens-Park, A. & Kole, C. (eds.). Berlin: Springer , p. 121-132 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Phytophthora
Genomic Instability
Genes
Asexual Reproduction
Fungicides
5 Citations (Scopus)

Modulation of Meiotic Recombination

Ramsay, L., Colas, I. & Waugh, R., 15 Oct 2014, Biotechnological Approaches to Barley Improvement. Kumlehn, J. & Stein, N. (eds.). Springer International Publishing, p. 311-329 19 p. (Biotechnology in Agriculture and Forestry; vol. 69).

Research output: Chapter in Book/Report/Conference proceedingChapter

plant breeding
Genetic Recombination
recombination
chromosomes
Poaceae

Photosynthesis in early land plants: adapting to the terrestrial environment

Raven, J. A. & Edwards, D., 2014, Photosynthesis in bryophytes and early land plants. Hanson, D. T. & Rice, S. K. (eds.). Springer , p. 29-58 30 p. (Advances in photosynthesis and respiration; vol. 37).

Research output: Chapter in Book/Report/Conference proceedingChapter

terrestrial environment
photosynthesis
desiccation
green alga
fossil
2 Citations (Scopus)

Remote sensing of plant stresses and its use in irrigation management

Jones, H. G., 2014, Acta Horticulturae. Vol. 1038. p. 239-248 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

plant stress
irrigation management
remote sensing
horticultural crops
photosynthesis
2013
2 Citations (Scopus)

A mechanistic comparison of the varkud satellite and hairpin ribozymes

Wilson, T. J. & Lilley, D. M. J., 2013, Catalytic RNA. Soukup, G. A. (ed.). London: Academic Press, p. 93-121 29 p. (Progress in molecular biology and translational science; vol. 120).

Research output: Chapter in Book/Report/Conference proceedingChapter

Catalytic RNA
Transesterification
Guanine
Catalysis
Acids

Analysis of RNA conformation using comparative gel electrophoresis

Lilley, D. M. J., Sep 2013, RNA Structure and Folding: Biophysical Techniques and Prediction Methods. Walter de Gruyter GmbH, p. 101-124 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Citations (Scopus)

Arabidopsis thaliana as Model for Studies on the Bacterial Root Microbiota

Schlaeppi, K., van Themaat, E. V. L., Bulgarelli, D. & Schulze-Lefert, P., 3 May 2013, Molecular Microbial Ecology of the Rhizosphere. John Wiley & Sons Inc., Vol. 1. p. 243-256 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Microbiota
Arabidopsis
Soil
Arabidopsis thaliana
Proteobacteria

Evolution of Virulence in Oomycete Plant Pathogens

Birch, P. R. J., Coates, M. E. & Beynon, J. L., 26 Oct 2013, Evolution of Virulence in Eukaryotic Microbes. Wiley, p. 385-403 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

13 Citations (Scopus)

Managing the soil physical environment for plants

Hallett, P. D. & Bengough, A. G., 2013, Soil conditions and plant growth. Gregory, P. J. & Nortcliff, S. (eds.). Chichester: Wiley-Blackwell, p. 238-268 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

26 Citations (Scopus)

PtdIns(4,5)P2-mediated cell signaling: emerging principles and PTEN as a paradigm for regulatory mechanism

Gericke, A., Leslie, N. R., Lösche, M. & Ross, A. H., 2013, Lipid-mediated protein signaling. Capelluto, D. S. (ed.). Springer Netherlands, p. 85-104 20 p. (Advances in Experimental Medicine and Biology; vol. 991).

Research output: Chapter in Book/Report/Conference proceedingChapter

Phosphatidylinositol 4,5-Diphosphate
Membrane Proteins
Phosphoric Monoester Hydrolases
Chromosomes, Human, Pair 10
1-Phosphatidylinositol 4-Kinase
1 Citation (Scopus)

Signalling during dictyostelium development

Weijer, C. J., 1 Jun 2013, Dictyostelids: Evolution, Genomics and Cell Biology. Springer , p. 49-70 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Dictyostelium
Cell Movement
cell movement
cells
Morphogenesis
2012

5-HT3 receptors

Peters, J., Cooper, M., Livesey, M., Carland, J. & Lambert, J., 22 Mar 2012, Ion Channels: From Structure to Function. Kew, J. & Davies, C. (eds.). Oxford: Oxford University Press, p. 232-251 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Diphtheria disease and genes involved in formation of diphthamide, key effector of the diphtheria toxin

Uthman, S., Liu, S., Giorgini, F., Stark, M. J. R., Costanzo, M. & Schaffrath, R., 21 Mar 2012, Insight and Control of Infectious Disease in Global Scenario . Roy, P. K. (ed.). Croatia: In Tech - Open Access Publisher, p. 333-357 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Embryonic stem cells: a signalling perspective

Stavridis, M. P., 2012, Mitochondrial DNA, mitochondria, disease and stem cells. St. John, J. (ed.). Humana Press, p. 49-68 (Stem cell biology and regenerative medicine).

Research output: Chapter in Book/Report/Conference proceedingChapter

Embryonic Stem Cells
Induced Pluripotent Stem Cells
Embryonic Development
Signal Transduction
Animal Models
2 Citations (Scopus)

Introduction: the case for polypharmacology

Hopkins, A. L., 2012, Polypharmacology in drug discovery. Peters, J-U. (ed.). Hoboken: John Wiley & Sons Inc., p. 1-6 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

6 Citations (Scopus)

Mutant phenotyping and pre-breeding in barley

Forster, B. P., Franckowiak, J. D., Lundqvist, U., Thomas, W. T. B., Leader, D., Shaw, P., Lyon, J. & Waugh, R., 2012, Plant mutation breeding and biotechnology. Shu, Q. Y., Forster, B. P. & Nakagawa, H. (eds.). Cambridge, Mass.: CAB International, p. 327-346 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

13 Citations (Scopus)

The PTEN and Myotubularin phosphoinositide 3-phosphatases: linking lipid signalling to human disease

Davies, E. M., Sheffield, D. A., Tibarewal, P., Fedele, C. G., Mitchell, C. A. & Leslie, N. R., 2012, Phosphoinositides I: enzymes of synthesis and degradation . Balla, T., Wymann, M. & York, J. D. (eds.). Dordrecht, Netherlands: Springer Netherlands, Vol. 58. p. 281-336 56 p. (Subcellular Biochemistry ; vol. 58).

Research output: Chapter in Book/Report/Conference proceedingChapter

Phosphoric Monoester Hydrolases
Phosphatidylinositols
Phosphatidylinositol 3-Kinases
Lipids
Mutation
2011

The dynamic proteome of the nucleolus

Boisvert, F-M., Ahmad, Y. & Lamond, A. I., 1 Jan 2011, Protein Reviews. Vol. 15. p. 29-42 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteome
Ribosome Subunits
Ribosomal DNA
Proteins
Organelles
2010
1 Citation (Scopus)

AMP-activated protein kinase

Hardie, D. G., 2010, Handbook of cell signaling. Bradshaw, R. A. & Dennis, E. A. (eds.). 2nd ed. London: Academic Press, Vol. 2. p. 551-557 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

AMP-Activated Protein Kinases
Adenosine Triphosphate
Adiponectin
Adenosine Monophosphate
Phosphotransferases
1 Citation (Scopus)

Barley genomics and malting quality improvement

Druka, A. & Waugh, R., 1 Jan 2010, Advanced topics in science and technology in China: Genetics and improvement of barley malt quality. Zhang, G. & Li, C. (eds.). Springer Verlag, p. 238-259 22 p. (Advanced Topics in Science and Technology in China).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biological systems
Genes
Genomics
Genetics
Proteomics

Chemical synthesis of parasitic glycoconjugates and phosphoglycans

Al-Maharik, N., Tee, J. A. & Nikolaev, A. V., 2010, Microbial glycobiology: structures, relevance and applications. Moran, A. P., Holst, O., Brennan, P. J. & von Itzstein, M. (eds.). London: Academic Press, p. 477-548 72 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Glycosylphosphatidylinositols
Glycoconjugates
Yeast
Ethers
Anchors

Glycogen synthase kinase 3

Cohen, P. & Frame, S., 2010, Handbook of cell signaling. Bradshaw, R. A. & Dennis, E. A. (eds.). 2nd ed. London: Academic Press, Vol. 2. p. 569-573 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Glycogen Synthase Kinase 3
Glycogen Synthase
Wnt Signaling Pathway
Insulin
Glycogen

Natural and Induced Mutants of Barley: Single Nucleotide Polymorphisms in Genes Important for Breeding

Thomas, W. T. B., Forster, B. P. & Waugh, R., 30 Mar 2010, The Handbook of Plant Mutation Screening: Mining of Natural and Induced Alleles. Wiley-VCH , p. 215-230 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hordeum
Polymorphism
Breeding
Single Nucleotide Polymorphism
Nucleotides

Naturally Occurring Inhibitors of Protein Serine/Threonine Phosphatases

MacKintosh, C. & Diplexcito, J., 2010, Handbook of cell signaling. Bradshaw, R. A. & Dennis, E. A. (eds.). 2nd ed. London: Academic Press, Vol. 2. p. 683-687 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Phosphoprotein Phosphatases
Okadaic Acid
Microcystins
Affinity chromatography
Protein Kinase Inhibitors
7 Citations (Scopus)

Phosphatase families dephosphorylating serine and threonine residues in proteins

Cohen, P. T. W., 2010, Handbook of cell signaling. Bradshaw, R. A. & Dennis, E. A. (eds.). 2nd ed. London: Academic Press, Vol. 2. p. 659-675 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Phosphoprotein Phosphatases
Threonine
Phosphoric Monoester Hydrolases
Serine
Proteins
3 Citations (Scopus)

Plants and oomycetes, an intimate relationship: Co-evolutionary principles and impact on agricultural practice

Rietman, H., Champouret, N., Hein, I., Niks, R. E. & Vleeshouwers, V. G. A. A., Nov 2010, Plant Sciences Reviews 2010. Hemming, D. (ed.). CAB International, Vol. 5. p. 257-274 18 p. (CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources).

Research output: Chapter in Book/Report/Conference proceedingChapter

Oomycetes
agricultural practice
vpr Genes
pathogen
pathogens
2009
2 Citations (Scopus)

bHLH proteins and their role in somitogenesis

Maroto, M., Iimura, T., Dale, J. K. & Bessho, Y., 2009, Somitogenesis. Maroto, M. & Whittock, N. V. (eds.). Berlin: Springer , p. 124-139 16 p. (Advances in experimental medicine and biology; vol. 638).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Fragment-based drug discovery in academia: Experiences from a tuberculosis programme

Heikkila, T. J., Surade, S., Silvestre, H. L., Dias, M. V. B., Ciulli, A., Bromfield, K., Scott, D., Howard, N., Wen, S., Wei, A. H., Osborne, D., Abell, C. & Blundell, T. L., 2009, From Molecules to Medicines: Structure of Biological Macromolecules and Its Relevance in Combating New Diseases and Bioterrorism. Sussman, J. L. & Spadon, P. (eds.). Springer Netherlands, p. 21-36 16 p. (NATO Science for Peace and Security Series A: Chemistry and Biology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Drug Discovery
Neglected Diseases
Tuberculosis
Malpractice
Microbial Drug Resistance

Glycosylphosphatidylinositol anchors

Ferguson, M. A. J., Kinoshita, T. & Hart, G. W., 2009, Essentials of glycobiology. Varki, A. (ed.). 2nd ed. Cold Spring Harbor: Cold Spring Harbor Laboratory Press, p. 143-162 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter