School of Life Sciences

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Research Output 1968 2020

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2020

Genetic Manipulation of Cryptosporidium parvum with CRISPR/Cas9

Sateriale, A., Pawlowic, M., Vinayak, S., Brooks, C. & Striepen, B., 2020, Cryptosporidium. Mead, J. R. & Arrowood, M. J. (eds.). New York: Humana Press, p. 219-228 10 p. (Methods in Molecular Biology; vol. 2052).

Research output: Chapter in Book/Report/Conference proceedingChapter

Clustered Regularly Interspaced Short Palindromic Repeats
Cryptosporidium parvum
Transfection
Infection
2019

2D-DIGE as a tool in neuroproteomics

Weiland, F., 2019, Neuroproteomics. Li, K. W. (ed.). New York: Humana Press Inc., p. 143-159 17 p. (Neuromethods; vol. 146).

Research output: Chapter in Book/Report/Conference proceedingChapter

Two-Dimensional Difference Gel Electrophoresis
Neurology
Proteome
Electrophoresis
Protein Isoforms
1 Citation (Scopus)

Enzymatic preparation of monoubiquitinated FANCD2 and FANCI proteins

Chaugule, V. K., Arkinson, C., Toth, R. & Walden, H., 2019, Methods in Enzymology. Hochstrasser, M. (ed.). Cambridge, MA: Academic Press Inc., Vol. 618. p. 73-104 32 p. (Methods in Enzymology; vol. 618).

Research output: Chapter in Book/Report/Conference proceedingChapter

Fanconi Anemia Complementation Group D2 Protein
DNA Repair
Repair
Ubiquitination
DNA
1 Citation (Scopus)

Metal bioavailability and the soil microbiome

Sullivan, T. S. & Gadd, G. M., 2019, Advances in Agronomy. Sparks, D. L. (ed.). Academic Press Inc., Vol. 155. p. 79-120 42 p. (Advances in Agronomy).

Research output: Chapter in Book/Report/Conference proceedingChapter

bioavailability
metals
metal
soil
microbial communities
2018

BLASTmap: A Shiny-Based Application to Visualize BLAST Results as Interactive Heat Maps and a Tool to Design Gene-Specific Baits for Bespoke Target Enrichment Sequencing

Baker, K., Stephen, G., Strachan, S., Armstrong, M. & Hein, I., 2018, Plant Pathogenic Fungi and Oomycetes. Ma, W. & Wolpert, T. (eds.). New York: Humana Press, Vol. 1848. p. 199-206 8 p. (Methods in Molecular Biology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Hot Temperature
Genes
RNA Probes
Disease Resistance
DNA Probes
2 Citations (Scopus)

Photosynthesis and Metabolism of Seagrasses

Larkum, A. W. D., Pernice, M., Schliep, M., Davey, P., Szabo, M., Raven, J. A., Lichtenberg, M., Brodersen, K. E. & Ralph, P. J., 2018, Seagrasses of Australia: Structure, Ecology and Conservation. Larkum, A. W. D., Kendrick, G. A. & Ralph, P. J. (eds.). Switzerland: Springer International Publishing, p. 315-342 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

photosynthesis
uptake mechanisms
metabolism
carbon
epidermis (plant)

Theranostics in the Gut

Stewart, F., Mulvana, H., Nathke, I. & Cochran, S., 5 Jan 2018, Theranostics and Image Guided Drug Delivery. Thanou, M. (ed.). United Kingdom: Royal Society of Chemistry, p. 182-210 29 p. (Drug Discovery; no. 63).

Research output: Chapter in Book/Report/Conference proceedingChapter

Capsule Endoscopy
Gastrointestinal Tract
Ablation Techniques
Therapeutic Human Experimentation
Miniaturization

Thermal Imaging and Infrared Sensing in Plant Ecophysiology

Jones, H. G., 2018, Advances in Plant Ecophysiology Techniques. Sánchez-Moreiras, A. M. & Reigosa, M. J. (eds.). Switzerland: Springer International Publishing, p. 135-151 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

ecophysiology
image analysis
heat
plant-water relations
evapotranspiration
2017
2 Citations (Scopus)

Cyclic electron flow in cyanobacteria and eukaryotic algae

Larkum, A. W. D., Szabó, M., Fitzpatrick, D. & Raven, J. A., Dec 2017, Photosynthesis and Bioenergetics. Barber, J. & Ruban, A. V. (eds.). United Kingdom: World Scientific Publishing , p. 305-344 40 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

algae
Cyanobacteria
Algae
electrons
Electrons
2 Citations (Scopus)

European Lead Factory

Giordanetto, F., Jones, P., Nelson, A., Benningshof, J., Müller, G., Pannifer, A., Van Boeckel, S. & Tzalis, D., 13 Jun 2017, Comprehensive Medicinal Chemistry III. Chackalamannil, S., Rotella, D. P. & Ward, S. E. (eds.). Elsevier, p. 505-519 15 p. (Reference Module in Chemistry, Molecular Sciences and Chemical Engineering).

Research output: Chapter in Book/Report/Conference proceedingChapter

Industrial plants
Screening
Throughput
Industry
Intellectual property
2 Citations (Scopus)

Medicinal Chemistry of Hybrids for Neurodegenerative Diseases

Uliassi, E., Prati, F., Bongarzone, S. & Bolognesi, M. L., Apr 2017, Design of Hybrid Molecules for Drug Development. Decker, M. (ed.). Elsevier Inc., p. 259-277 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Neurodegenerative diseases
Prions
Ligands
Molecules
Pharmaceutical Preparations
1 Citation (Scopus)

Nickel in Microbial Physiology - From Single Proteins to Complex Trafficking Systems: Nickel Import/Export

Rodrigue, A., Albareda, M., Mandrand-Berthelot, M. A. & Palacios, J., 4 Apr 2017, The Biological Chemistry of Nickel: Biochemistry. Zamble, D., Rowinska-Zyrek, M. & Kozlowski, H. (eds.). 10 ed. Royal Society of Chemistry, Vol. 2017-January. p. 237-258 22 p. (RSC Metallobiology; vol. 2017-January, no. 10).

Research output: Chapter in Book/Report/Conference proceedingChapter

Physiology
Nickel
Large scale systems
Bacteria
Proteins
2016
3 Citations (Scopus)

Engineering Barriers to Infection by Undermining Pathogen Effector Function or by Gaining Effector Recognition

Ahmed, A. A., Mclellan, H., Aguilar, G. B., Hein, I., Thordal-Christensen, H. & Birch, P. R. J., 9 Jun 2016, Plant Pathogen Resistance Biotechnology. Collinge, D. B. (ed.). Wiley, p. 21-50 30 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Pathogens
Plant Immunity
vpr Genes
Pattern Recognition Receptors
Infection
2 Citations (Scopus)

Protein phosphatases and DNA replication initiation

Stark, M. J. R., Hiraga, S. I. & Donaldson, A. D., 12 Feb 2016, The Initiation of DNA Replication in Eukaryotes. Kaplan, D. L. (ed.). Springer International Publishing, p. 461-477 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Phosphoprotein Phosphatases
DNA replication
DNA Replication
Phosphoric Monoester Hydrolases
Phosphorylation

Sialylation and immune surveillance of cancer by siglecs

Crocker, P. R. & Mohan, B., 27 Jan 2016, Glycosignals in Cancer: Mechanisms of Malignant Phenotypes. Springer Japan, p. 125-138 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Sialic Acid Binding Immunoglobulin-like Lectins
Tumors
N-Acetylneuraminic Acid
Cells
Glycosylation
2015

Pharmacological space

Hopkins, A. L., 2015, The practice of medicinal chemistry. Wermuth, C., Aldous, D., Raboisson, P. & Rognan, D. (eds.). 4th ed. Academic Press, p. 395-408 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Drug Discovery
Pharmacology
Essential Drugs
Epigenomics
Pharmaceutical Preparations
4 Citations (Scopus)

The hypersensitive response in PAMP- and effector-triggered immune responses

Feechan, A., Turnbull, D., Stevens, L. J., Engelhardt, S., Birch, P. R. J., Hein, I. & Gilroy, E. M., 2015, Plant Programmed Cell Death. Springer International Publishing, p. 235-268 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Steel
hypersensitive response
steel
Quenching
immune response
1 Citation (Scopus)

Time-lapse imaging of nuclear bodies

Hutten, S., Swift, S. & Lamond, A. I., 2015, Nuclear bodies and noncoding RNAs: methods and protocols. Nakagawa, S. & Hirose, T. (eds.). New York: Springer , p. 55-67 13 p. (Methods in molecular biology; vol. 1262).

Research output: Chapter in Book/Report/Conference proceedingChapter

Time-Lapse Imaging
Photobleaching
Microscopy
Molecular Dynamics Simulation
Cell Nucleus
2014
5 Citations (Scopus)

Exploiting barley genetic resources for genomewide association scans (GWAS)

Waugh, R., Flavell, A. J., Russell, J., Thomas, W. B., Ramsay, L. & Comadran, J., 1 Jan 2014, Genomics of Plant Genetic Resources: Volume 1. Managing, Sequencing and Mining Genetic Resources. Springer Netherlands, p. 237-254 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hordeum
genetic resources
Genes
barley
Multifactorial Inheritance
1 Citation (Scopus)

Genome-wide association scans (GWAS)

Waugh, R., Thomas, B., Flavell, A., Ramsay, L., Comadran, J. & Russell, J., 1 Jan 2014, Biotechnological Approaches to Barley Improvement. Kumlehn, J. & Stein, N. (eds.). Springer International Publishing, p. 345-365 21 p. (Biotechnology in Agriculture and Forestry; vol. 69).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genome-Wide Association Study
genome
Population
Gene Pool
Genetic Research
7 Citations (Scopus)

Genomic DNA library preparation for resistance gene enrichment and sequencing (RenSeq) in plants

Jupe, F., Chen, X., Verweij, W., Witek, K., Jones, J. D. G. & Hein, I., 15 Feb 2014, Plant-Pathogen Interactions. Birch, P., Jones, J. T. & Bos, J. I. B. (eds.). Springer , Vol. 1127. p. 291-303 13 p. (Methods in Molecular Biology).

Research output: Chapter in Book/Report/Conference proceedingChapter

Genomic Library
Gene Library
Genes
Plant Genes
Sequence Analysis

Illuminating the Phytophthora capsici Genome

Lamour, K., Hu, J., Lefebvre, V., Mudge, J., Howden, A. & Huitema, E., 23 Aug 2014, Genomics of Plant-Associated Fungi and Oomycetes: Dicot Pathogens. Dean, R. A., Lichens-Park, A. & Kole, C. (eds.). Berlin: Springer , p. 121-132 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Phytophthora
Genomic Instability
Genes
Asexual Reproduction
Fungicides
5 Citations (Scopus)

Modulation of Meiotic Recombination

Ramsay, L., Colas, I. & Waugh, R., 15 Oct 2014, Biotechnological Approaches to Barley Improvement. Kumlehn, J. & Stein, N. (eds.). Springer International Publishing, p. 311-329 19 p. (Biotechnology in Agriculture and Forestry; vol. 69).

Research output: Chapter in Book/Report/Conference proceedingChapter

plant breeding
Genetic Recombination
recombination
chromosomes
Poaceae

Photosynthesis in early land plants: adapting to the terrestrial environment

Raven, J. A. & Edwards, D., 2014, Photosynthesis in bryophytes and early land plants. Hanson, D. T. & Rice, S. K. (eds.). Springer , p. 29-58 30 p. (Advances in photosynthesis and respiration; vol. 37).

Research output: Chapter in Book/Report/Conference proceedingChapter

terrestrial environment
photosynthesis
desiccation
green alga
fossil
2 Citations (Scopus)

Remote sensing of plant stresses and its use in irrigation management

Jones, H. G., 2014, Acta Horticulturae. Vol. 1038. p. 239-248 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

plant stress
irrigation management
remote sensing
horticultural crops
photosynthesis
2013
3 Citations (Scopus)

A mechanistic comparison of the varkud satellite and hairpin ribozymes

Wilson, T. J. & Lilley, D. M. J., 2013, Catalytic RNA. Soukup, G. A. (ed.). London: Academic Press, p. 93-121 29 p. (Progress in molecular biology and translational science; vol. 120).

Research output: Chapter in Book/Report/Conference proceedingChapter

Catalytic RNA
Transesterification
Guanine
Catalysis
Acids

Analysis of RNA conformation using comparative gel electrophoresis

Lilley, D. M. J., Sep 2013, RNA Structure and Folding: Biophysical Techniques and Prediction Methods. Walter de Gruyter GmbH, p. 101-124 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Citations (Scopus)

Arabidopsis thaliana as Model for Studies on the Bacterial Root Microbiota

Schlaeppi, K., van Themaat, E. V. L., Bulgarelli, D. & Schulze-Lefert, P., 3 May 2013, Molecular Microbial Ecology of the Rhizosphere. John Wiley & Sons Inc., Vol. 1. p. 243-256 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Microbiota
Arabidopsis
Soil
Arabidopsis thaliana
Proteobacteria
4 Citations (Scopus)

Chemical Transformation of Yeast

Bergkessel, M. & Guthrie, C., 2013, Laboratory Methods in Enzymology: DNA. Lorsch, J. (ed.). Academic Press Inc., Vol. 529. p. 311-320 10 p. (Methods in Enzymology; vol. 529).

Research output: Chapter in Book/Report/Conference proceedingChapter

Yeast
Yeasts
DNA
Cells
DNA Replication
18 Citations (Scopus)

Colony PCR

Bergkessel, M. & Guthrie, C., 2013, Laboratory Methods in Enzymology: DNA. Lorsch, J. (ed.). Academic Press Inc., Vol. 529. p. 299-309 11 p. (Methods in Enzymology; vol. 529).

Research output: Chapter in Book/Report/Conference proceedingChapter

Yeast
Bacteria
Screening
Yeasts
Polymerase Chain Reaction

Evolution of Virulence in Oomycete Plant Pathogens

Birch, P. R. J., Coates, M. E. & Beynon, J. L., 26 Oct 2013, Evolution of Virulence in Eukaryotic Microbes. Wiley, p. 385-403 19 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

13 Citations (Scopus)

Managing the soil physical environment for plants

Hallett, P. D. & Bengough, A. G., 2013, Soil conditions and plant growth. Gregory, P. J. & Nortcliff, S. (eds.). Chichester: Wiley-Blackwell, p. 238-268 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

26 Citations (Scopus)

PtdIns(4,5)P2-mediated cell signaling: emerging principles and PTEN as a paradigm for regulatory mechanism

Gericke, A., Leslie, N. R., Lösche, M. & Ross, A. H., 2013, Lipid-mediated protein signaling. Capelluto, D. S. (ed.). Springer Netherlands, p. 85-104 20 p. (Advances in Experimental Medicine and Biology; vol. 991).

Research output: Chapter in Book/Report/Conference proceedingChapter

Phosphatidylinositol 4,5-Diphosphate
Membrane Proteins
Phosphoric Monoester Hydrolases
Chromosomes, Human, Pair 10
1-Phosphatidylinositol 4-Kinase

Secretory immunoglobulins and their transport

Woof, J., Mestecky, J. & Kaetzel, C., 2013, Principles of mucosal immunology: Society for mucosal immunology. Smith, P. D., MacDonald, T. T. & Blumberg, R. S. (eds.). 1 ed. New York: Taylor & Francis, p. 121-140 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Signalling during dictyostelium development

Weijer, C. J., 1 Jun 2013, Dictyostelids: Evolution, Genomics and Cell Biology. Springer , p. 49-70 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Dictyostelium
Cell Movement
cell movement
cells
Morphogenesis

Yeast-gene replacement using PCR products

Bergkessel, M., Guthrie, C. & Abelson, J., 2013, Laboratory Methods in Enzymology: Cell, Lipid and Carbohydrate. Lorsch, J. (ed.). Academic Press Inc., Vol. 533. p. 43-55 13 p. (Methods in Enzymology; vol. 533).

Research output: Chapter in Book/Report/Conference proceedingChapter

Yeast
Genes
Yeasts
Polymerase Chain Reaction
Genome
2012

5-HT3 receptors

Peters, J., Cooper, M., Livesey, M., Carland, J. & Lambert, J., 22 Mar 2012, Ion Channels: From Structure to Function. Kew, J. & Davies, C. (eds.). Oxford: Oxford University Press, p. 232-251 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Diphtheria disease and genes involved in formation of diphthamide, key effector of the diphtheria toxin

Uthman, S., Liu, S., Giorgini, F., Stark, M. J. R., Costanzo, M. & Schaffrath, R., 21 Mar 2012, Insight and Control of Infectious Disease in Global Scenario . Roy, P. K. (ed.). Croatia: In Tech - Open Access Publisher, p. 333-357 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Embryonic stem cells: a signalling perspective

Stavridis, M. P., 2012, Mitochondrial DNA, mitochondria, disease and stem cells. St. John, J. (ed.). Humana Press, p. 49-68 (Stem cell biology and regenerative medicine).

Research output: Chapter in Book/Report/Conference proceedingChapter

Embryonic Stem Cells
Induced Pluripotent Stem Cells
Embryonic Development
Signal Transduction
Animal Models
2 Citations (Scopus)

Introduction: the case for polypharmacology

Hopkins, A. L., 2012, Polypharmacology in drug discovery. Peters, J-U. (ed.). Hoboken: John Wiley & Sons Inc., p. 1-6 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

6 Citations (Scopus)

Mutant phenotyping and pre-breeding in barley

Forster, B. P., Franckowiak, J. D., Lundqvist, U., Thomas, W. T. B., Leader, D., Shaw, P., Lyon, J. & Waugh, R., 2012, Plant mutation breeding and biotechnology. Shu, Q. Y., Forster, B. P. & Nakagawa, H. (eds.). Cambridge, Mass.: CAB International, p. 327-346 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

14 Citations (Scopus)

The PTEN and Myotubularin phosphoinositide 3-phosphatases: linking lipid signalling to human disease

Davies, E. M., Sheffield, D. A., Tibarewal, P., Fedele, C. G., Mitchell, C. A. & Leslie, N. R., 2012, Phosphoinositides I: enzymes of synthesis and degradation . Balla, T., Wymann, M. & York, J. D. (eds.). Dordrecht, Netherlands: Springer Netherlands, Vol. 58. p. 281-336 56 p. (Subcellular Biochemistry ; vol. 58).

Research output: Chapter in Book/Report/Conference proceedingChapter

Phosphoric Monoester Hydrolases
Phosphatidylinositols
Phosphatidylinositol 3-Kinases
Lipids
Mutation
2011

The dynamic proteome of the nucleolus

Boisvert, F-M., Ahmad, Y. & Lamond, A. I., 1 Jan 2011, Protein Reviews. Vol. 15. p. 29-42 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Proteome
Ribosome Subunits
Ribosomal DNA
Proteins
Organelles
2010
1 Citation (Scopus)

AMP-activated protein kinase

Hardie, D. G., 2010, Handbook of cell signaling. Bradshaw, R. A. & Dennis, E. A. (eds.). 2nd ed. London: Academic Press, Vol. 2. p. 551-557 7 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

AMP-Activated Protein Kinases
Adenosine Triphosphate
Adiponectin
Adenosine Monophosphate
Phosphotransferases
1 Citation (Scopus)

Barley genomics and malting quality improvement

Druka, A. & Waugh, R., 1 Jan 2010, Advanced topics in science and technology in China: Genetics and improvement of barley malt quality. Zhang, G. & Li, C. (eds.). Springer Verlag, p. 238-259 22 p. (Advanced Topics in Science and Technology in China).

Research output: Chapter in Book/Report/Conference proceedingChapter

Biological systems
Genes
Genomics
Genetics
Proteomics

Chemical synthesis of parasitic glycoconjugates and phosphoglycans

Al-Maharik, N., Tee, J. A. & Nikolaev, A. V., 2010, Microbial glycobiology: structures, relevance and applications. Moran, A. P., Holst, O., Brennan, P. J. & von Itzstein, M. (eds.). London: Academic Press, p. 477-548 72 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Glycosylphosphatidylinositols
Glycoconjugates
Yeast
Ethers
Anchors

Glycogen synthase kinase 3

Cohen, P. & Frame, S., 2010, Handbook of cell signaling. Bradshaw, R. A. & Dennis, E. A. (eds.). 2nd ed. London: Academic Press, Vol. 2. p. 569-573 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Glycogen Synthase Kinase 3
Glycogen Synthase
Wnt Signaling Pathway
Insulin
Glycogen

Natural and Induced Mutants of Barley: Single Nucleotide Polymorphisms in Genes Important for Breeding

Thomas, W. T. B., Forster, B. P. & Waugh, R., 30 Mar 2010, The Handbook of Plant Mutation Screening: Mining of Natural and Induced Alleles. Wiley-VCH , p. 215-230 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hordeum
Polymorphism
Breeding
Single Nucleotide Polymorphism
Nucleotides

Naturally Occurring Inhibitors of Protein Serine/Threonine Phosphatases

MacKintosh, C. & Diplexcito, J., 2010, Handbook of cell signaling. Bradshaw, R. A. & Dennis, E. A. (eds.). 2nd ed. London: Academic Press, Vol. 2. p. 683-687 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Phosphoprotein Phosphatases
Okadaic Acid
Microcystins
Affinity chromatography
Protein Kinase Inhibitors
7 Citations (Scopus)

Phosphatase families dephosphorylating serine and threonine residues in proteins

Cohen, P. T. W., 2010, Handbook of cell signaling. Bradshaw, R. A. & Dennis, E. A. (eds.). 2nd ed. London: Academic Press, Vol. 2. p. 659-675 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Phosphoprotein Phosphatases
Threonine
Phosphoric Monoester Hydrolases
Serine
Proteins