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2020
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A conserved ATG2-GABARAP family interaction is critical for phagophore formation

Bozic, M., van den Bekerom, L., Milne, B. A., Goodman, N., Roberston, L., Prescott, A., Macartney, T., Dawe, N. & McEwan, D., 3 Feb 2020, In : EMBO Reports. p. 1-17 17 p., e48412.

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Adar RNA editing-dependent and -independent effects are required for brain and innate immune functions in Drosophila

Deng, P., Khan, A., Jacobson, D., Sambrani, N., McGurk, L., Li, X., Jayasree, A., Hejatko, J., Shohat-Ophir, G., O'Connell, M. A., Li, J. B. & Keegan, L. P., 27 Mar 2020, In : Nature Communications. 11, 1, p. 1580

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A fitness cost resulting from Hamiltonella defensa infection is associated with altered probing and feeding behaviour in Rhopalosiphum padi

Leybourne, D. J., Valentine, T. A., Bos, J. I. B. & Karley, A. J., 2 Jan 2020, In : Journal of Experimental Biology. 223, 1, p. 1-11 11 p., 207936.

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AMPK activation induces mitophagy and promotes mitochondrial fission while activating TBK1 in a PINK1-Parkin independent manner

Seabright, A. P., Fine, N. H. F., Barlow, J. P., Lord, S. O., Musa, I., Gray, A., Bryant, J. A., Banzhaf, M., Lavery, G. G., Hardie, D. G., Hodson, D. J., Philp, A. & Lai, Y-C., 22 Mar 2020, In : FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 18 p.

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An aphid effector promotes barley susceptibility through suppression of defence gene expression

Escudero-Martinez, C., Rodriguez, P. A., Liu, S., Santos, P. A., Stephens, J. & Bos, J., 28 Jan 2020, In : Journal of Experimental Biology.

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A new Rhodococcus aetherivorans strain isolated from lubricant-contaminated soil as a prospective phenol biodegrading agent

Nogina, T., Fomina, M., Dumanskaya, T., Zelena, L., Khomenko, L., Mikhalovsky, S., Podgorskyi, V. & Gadd, G., 11 Feb 2020, In : Applied Microbiology and Biotechnology. 15 p.

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An intellectual disability syndrome with single nucleotide variants in O-GlcNAc Transferase

Pravata, V., Omelkova, M., Stavridis, M., Desbiens, C. M., Stephen, H. M., Lefeber, D. J., Gécz, J., Gundogdu, M., Õunap, K., Joss, S., Schwartz, C. E., Wells, L. & van Aalten, D., 20 Feb 2020, In : European Journal of Human Genetics. 9 p.

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A platform for target prediction of phenotypic screening hit molecules

Homeyer, N., van Deursen, R., Ochoa-Montaño, B., Heikamp, K., Ray, P., Zuccotto, F., Blundell, T. L. & Gilbert, I. H., Mar 2020, In : Journal of Molecular Graphics & Modelling. 95, p. 1-9 9 p., 107485.

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Association mapping and genetic dissection of drought-induced canopy temperature differences in rice

Melandri, G., Prashar, A., Mccouch, S. R., Van Der Linden, G., Jones, H. G., Kadam, N., Jagadish, K., Bouwmeester, H. & Ruyter-Spira, C., 7 Feb 2020, In : Journal of Experimental Botany. 71, 4, p. 1614-1627 14 p.

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A uniquely complex mitochondrial proteome from Euglena gracilis

Hammond, M. J., Nenarokova, A., Butenko, A., Zoltner, M., Lacová Dobáková, E., Field, M. & Lukeš, J., 11 Mar 2020, In : Molecular Biology and Evolution.

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Open Access

Biotransformation of struvite by Aspergillus niger: phosphate release and magnesium biomineralization as glushinskite

Suyamud, B., Ferrier, J., Csetenyi, L., Inthorn, D. & Gadd, G. M., 20 Feb 2020, In : Environmental Microbiology. 15 p.

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Bisphenol A removal from a plastic industry wastewater by Dracaena sanderiana endophytic bacteria and Bacillus cereus NI

Suyamud, B., Thiravetyan, P., Gadd, G. M., Panyapinyopol, B. & Inthorn, D., 2020, In : International Journal of Phytoremediation. 22, 2, p. 167-175 9 p.

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CAP-MAP: cap analysis protocol with minimal analyte processing, a rapid and sensitive approach to analysing mRNA cap structures

Galloway, A., Atrih, A., Grzela, R., Darzynkiewicz, E., Ferguson, M. A. J. & Cowling, V. H., 26 Feb 2020, In : Open Biology. 10, 2, p. 1-13 13 p., 190306.

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Caveolin-3 deficiency associated with the dystrophy P104L mutation impairs skeletal muscle mitochondrial form and function

Shah, D., Nisr, R., Stretton, C., Krasteva-Christ, G. & Hundal, H., 23 Feb 2020, In : Journal of Cachexia, Sarcopenia and Muscle. 21 p.

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Characterisation of barley landraces from Syria and Jordan for resistance to rhynchosporium and identification of diagnostic markers for Rrs1Rh4

Looseley, M. E., Griffe, L. L., Büttner, B., Wright, K. M., Bayer, M. M., Coulter, M., Thauvin, J-N., Middlefell-Williams, J., Maluk, M., Okpo, A., Kettles, N., Werner, P., Byrne, E. & Avrova, A., 22 Jan 2020, In : Theoretical and Applied Genetics. 22 p.

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Characterisation of the Dynamic Interactions between Complex N-Glycans and Human CD22

Di Carluccio, C., Crisman, E., Manabe, Y., Forgione, R. E., Lacetera, A., Amato, J., Pagano, B., Randazzo, A., Zampella, A., Lanzetta, R., Fukase, K., Molinaro, A., Crocker, P. R., Martín-Santamaría, S., Marchetti, R. & Silipo, A., 15 Jan 2020, In : ChemBioChem. 21, 1-2, p. 129-140 12 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Comment on “Rivalry in Bacillus subtilis colonies: enemy or family?”

Matoz-Fernandez, D., Arnaouteli, S., Porter, M., MacPhee, C. E., Stanley-Wall, N. R. & Davidson, F. A., 24 Mar 2020, In : Soft Matter. 16, 13, p. 3344-3346 3 p.

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Correction to: a new Rhodococcus aetherivorans strain isolated from lubricant-contaminated soil as a prospective phenol-biodegrading agent

Nogina, T., Fomina, M., Dumanskaya, T., Zelena, L., Khomenko, L., Mikhalovsky, S., Podgorskyi, V. & Gadd, G. M., 3 Mar 2020, In : Applied Microbiology and Biotechnology. 2 p.

Research output: Contribution to journalArticle

Crumbs2 mediates ventricular layer remodelling to form the spinal cord central canal

Tait, C., Chinnaiya, K., Manning, E., Murtaza, M., Ashton, J-P., Furley, N., Hill, C. J., Alves, C. H., Wijnholds, J., Erdmann, K. S., Furley, A., Rashbass, P., Das, R. M., Storey, K. G. & Placzek, M., 9 Mar 2020, In : PLoS Biology. 18, 3, p. 1-28 28 p., e3000470.

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Discovery and Differential Processing of HLA Class II-Restricted Minor Histocompatibility Antigen LB-PIP4K2A-1S and Its Allelic Variant by Asparagine Endopeptidase

Kremer, A. N., Bausenwein, J., Lurvink, E., Kremer, A. E., Rutten, C. E., van Bergen, C. A. M., Kretschmann, S., van der Meijden, E., Honders, M. W., Mazzeo, D., Watts, C., Mackensen, A., Falkenburg, J. H. F. & Griffioen, M., 11 Mar 2020, In : Frontiers in Immunology. 11, p. 1-11 11 p., 381.

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Discovery and Optimization of a Compound Series Active against Trypanosoma cruzi, the Causative Agent of Chagas Disease

Harrison, J. R., Sarkar, S., Hampton, S., Riley, J., Stojanovski, L., Sahlberg, C., Appelqvist, P., Erath, J., Mathan, V., Rodriguez, A., Kaiser, M., Pacanowska, D. G., Read, K. D., Johansson, N. G. & Gilbert, I. H., 26 Mar 2020, In : Journal of Medicinal Chemistry. 63, 6, p. 3066-3089 24 p.

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Diversification of CORVET tethers facilitates transport complexity in Tetrahymena thermophila

Sparvoli, D., Zoltner, M., Cheng, C-Y., Field, M. C. & Turkewitz, A., 12 Feb 2020, In : Journal of Cell Science. 133, 3, p. 1-18 18 p., jcs238659.

Research output: Contribution to journalArticle

Domain Model Explains Propagation Dynamics and Stability of Histone H3K27 and H3K36 Methylation Landscapes

Alabert, C., Loos, C., Voelker-Albert, M., Graziano, S., Forné, I., Reveron-Gomez, N., Schuh, L., Hasenauer, J., Marr, C., Imhof, A. & Groth, A., 28 Jan 2020, In : Cell Reports. 30, 4, p. 1223-1234.e8 21 p.

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Downsizing Class II Lasso Peptides: Genome Mining-Guided Isolation of Huascopeptin Containing the First Gly1-Asp7 Macrocycle

Cortés-Albayay, C., Jarmusch, S. A., Trusch, F., Ebel, R., Andrews, B. A., Jaspars, M. & Asenjo, J. A., 7 Feb 2020, In : Journal of Organic Chemistry. 85, 3, p. 1661-1667 7 p.

Research output: Contribution to journalArticle

Dynamic CO 2 and pH levels in coastal, estuarine, and inland waters: Theoretical and observed effects on harmful algal blooms

Raven, J. A., Gobler, C. S. & Hansen, P. J., Jan 2020, In : Harmful Algae. 91, p. 1-13 13 p., 101594.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Evolutionary temperature compensation of carbon fixation in marine phytoplankton

Barton, S., Jenkins, J., Buckling, A., Schaum, C. -E., Smirnoff, N., Raven, J. A. & Yvon-Durocher, G., Apr 2020, In : Ecology letters. 23, 4, p. 722-733 12 p.

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Expanding the phenotype of the CDKL5 deficiency disorder: Are seizures mandatory?

MacKay, C. I., Bick, D., Prokop, J. W., Muñoz, I., Rouse, J., Downs, J. & Leonard, H., 8 Feb 2020, In : American Journal of Medical Genetics Part A. 6 p.

Research output: Contribution to journalArticle

Genomic Differences between Listeria monocytogenes EGDe Isolates Reveal Crucial Roles for SigB and Wall Rhamnosylation in Biofilm Formation

Hsu, C-Y., Cairns, L., Hobley, L., Abbott, J., O'Byrne, C. & Stanley-Wall, N. R., 11 Mar 2020, In : Journal of Bacteriology. 202, 7, p. 1-13 13 p., e00692-19.

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HIF1α-dependent mitophagy facilitates cardiomyoblast differentiation

Zhao, J-F., Rodger, C., Allen, G. F. G., Weidlich, S. & Ganley, I. G., 4 Mar 2020, In : Cell Stress. 15 p.

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How can large celled diatoms rapidly modulate sinking rates episodically?

Lavoie, M. & Raven, J. A., 12 Mar 2020, In : Journal of Experimental Botany. 11 p.

Research output: Contribution to journalArticle

Human Peripheral Blood Neutrophil Isolation for Interrogating the Parkinson’s Associated LRRK2 Kinase Pathway by Assessing Rab10 Phosphorylation

Fan, Y., Tonelli, F., Padmanabhan, S., Baptista, M., Riley, L., Smith, D., Marras, C., Howden, A., Alessi, D. & Sammler, E., 22 Mar 2020, In : JoVE: Journal of Visualized Experiments. 157, e58956.

Research output: Contribution to journalArticle

Identification of small and large genomic candidate variants in bovine pulmonary hypoplasia and anasarca syndrome

Häfliger, I. M., Wiedemar, N., Švara, T., Starič, J., Cociancich, V., Šest, K., Gombač, M., Paller, T., Agerholm, J. S. & Drögemüller, C., 18 Feb 2020, In : Animal Genetics.

Research output: Contribution to journalArticle

Improved models of the effects of winter chilling on blackcurrant (Ribes nigrum L.) show cultivar specific sensitivity to warm winters

Preedy, K., Brennan, R., Jones, H. & Gordon, S., 15 Jan 2020, In : Agricultural and Forest Meteorology. 280, p. 1-30 30 p., 107777.

Research output: Contribution to journalArticle

Increasing nature connection in children: A mini review of interventions

Barrable, A. & Booth, D., 19 Mar 2020, In : Frontiers in Psychology. 11, p. 1-7 7 p., 492.

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Indoxyl sulfate impairs valsartan-induced neovascularization

Kuo, K-L., Zhao, J-F., Huang, P-H., Guo, B-C., Tarng, D-C. & Lee, T-S., Feb 2020, In : Redox Biology. 30, p. 1-9 9 p., 101433.

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Ketamine inhibits synaptic transmission and nicotinic acetylcholine receptor-mediated responses in rat intracardiac ganglia in situ

Harper, A. A., Rimmer, K., Dyavanapalli, J., McArthur, J. R. & Adams, D. J., 15 Mar 2020, In : Neuropharmacology. 165, p. 1-8 8 p., 107932.

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Mechanism of Activation of AMPK by Cordycepin

Hawley, S. A., Ross, F. A., Russell, F. M., Atrih, A., Lamont, D. & Hardie, D. G., 20 Feb 2020, In : Cell Chemical Biology. 27, 2, p. 214-222.e4 14 p.

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Mechanism of homodimeric cytokine receptor activation and dysregulation by oncogenic mutations

Wilmes, S., Hafer, M., Vuorio, J., Tucker, J. A., Winkelmann, H., Löchte, S., Stanly, T. A., Pulgar Prieto, K. D., Poojari, C., Sharma, V., Richter, C. P., Kurre, R., Hubbard, S. R., Garcia, K. C., Moraga, I., Vattulainen, I., Hitchcock, I. S. & Piehler, J., 7 Feb 2020, In : Science. 367, 6478, p. 643-652 10 p.

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Membrane and synaptic defects leading to neurodegeneration in Adar mutant Drosophila are rescued by increased autophagy

Khan, A., Paro, S., McGurk, L., Sambrani, N., Hogg, M. C., Brindle, J., Pennetta, G., Keegan, L. P. & O'Connell, M. A., 14 Feb 2020, In : BMC Biology. 18, 16 p., 15 (2020).

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Mild stress conditions during laboratory culture promote the proliferation of mutations that negatively affect Sigma B activity in Listeria monocytogenes

Guerreiro, D. N., Wu, J., Dessaux, C., Oliveira, A. H., Tiensuu, T., Gudynaite, D., Marinho, C. M., Boyd, A., García-Del Portillo, F., Johansson, J. & O'Byrne, C. P., 24 Feb 2020, In : Journal of Bacteriology.

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mTORC1 directly inhibits AMPK to promote cell proliferation under nutrient stress

Ling, N. X. Y., Kaczmarek, A., Hoque, A., Davie, E., Ngoei, K. R. W., Morrison, K. R., Smiles, W. J., Forte, G. M., Wang, T., Lie, S., Dite, T. A., Langendorf, C. G., Scott, J. W., Oakhill, J. S. & Petersen, J., Jan 2020, In : Nature Metabolism. 2, 1, p. 41-49 9 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Nanopore direct RNA sequencing maps the complexity of Arabidopsis mRNA processing and m6A modification

Parker, M. T., Knop, K., Sherwood, A. V., Schurch, N. J., Mackinnon, K., Gould, P. D., Hall, A. J. W., Barton, G. J. & Simpson, G. G., 14 Jan 2020, In : eLife. 9, p. 1-35 35 p., e49658.

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Natural resistance to Potato virus Y in Solanum tuberosum Group Phureja

Torrance, L., Cowan, G. H., McLean, K., MacFarlane, S. A., Al-Abedy, A. N. ., Armstrong, M., Lim, T-Y., Hein, I. & Bryan, G. J., Mar 2020, In : Theoretical and Applied Genetics. 133, 3, p. 967-980 14 p.

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