University of Dundee

2025

A Bacteroides thetaiotaomicron genetic locus encodes activities consistent with mucin O-glycoprotein processing and N-acetylgalactosamine metabolism

Ndeh, D. A. (Lead / Corresponding author), Nakjang, S., Kwiatkowski, K. J., Sawyers, C., Koropatkin, N. M., Hirt, R. P. (Lead / Corresponding author) & Bolam, D. N. (Lead / Corresponding author), 12 Apr 2025, In: Nature Communications. 16, 20 p., 3485.

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A barley pan-transcriptome reveals layers of genotype-dependent transcriptional complexity

Guo, W., Schreiber, M., Marosi, V., Bagnaresi, P., Jørgensen, M. E., Chalmers, K. J., Chapman, B., Dang, V., Dockter, C., Fiebig, A., Fincher, G. B., Fricano, A., Fuller, J., Haaning, A. M., Haberer, G., Himmelbach, A., Jayakodi, M., Jia, Y., Kamal, N. & Langridge, P. & 30 others, Li, C., Lu, Q., Lux, T., Mascher, M., Mayer, K. F. X., McCallum, N., Milne, L., Muehlbauer, G. J., Padmarasu, S., Pillen, K., Pedas, P. R., Pozniak, C., Sato, K., Schmutzer, T., Scholz, U., Schüler, D., Šimková, H., Skadhauge, B., Stein, N., Wang, P., Wonneberger, R., Zhang, X.-Q., Zhang, G., Braune, K. B., Cattivelli, L., Spannagl, M., Bayer, M. (Lead / Corresponding author), Simpson, C. (Lead / Corresponding author), Zhang, R. (Lead / Corresponding author) & Waugh, R. (Lead / Corresponding author), 3 Feb 2025, In: Nature Genetics. 57, p. 441-450 29 p.

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1 Citation (Scopus)

A breakage-based discrete element study of stress relaxation in quartz sands

Lei, J. (Lead / Corresponding author), Arroyo, M., Ciantia, M. & Zhang, N., 21 Mar 2025, In: Acta Geotechnica. 18 p.

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Accelerating Isotope Dilution LC-MS-based Desmosine Quantification for Estimating Elastin Turnover

Kuzmanova, E., McIntyre, A., Syed, M., Iskandar, Z., Newby, D. E., Bown, M. J., Choy, A.-M. & Huang, J. (Lead / Corresponding author), 2025, In: Bioanalysis. 17, 2, p. 99-104 6 p.

Research output: Contribution to journal › Article › peer-review

Accounting and Conflict in the City: The Sheffield Tree Campaign, Counter Accounts and Bakhtinian Dialogics

Shu, X., Smyth, S. (Lead / Corresponding author), Haslam, J. & Dey, C., 9 Mar 2025, In: Financial Accountability and Management. 14 p.

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A Communication Toolkit to assist families access dental care services in Scotland: A Qualitative evaluation

Nanjappa, S. (Lead / Corresponding author), Indumani Devi Wijesiri, T. (Lead / Corresponding author), Carson, S. J. & Freeman, R., 14 Feb 2025, In: Dentistry Journal. 13, 2, 10 p., 80.

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A concept for fully automated segmentation of bone in ultrasound imaging

Ramakrishnan, A. H., Rajappa, M., Krithivasan, K., Chockalingam, N., Chatzistergos, P. E. & Amirtharajan, R. (Lead / Corresponding author), 8 Mar 2025, In: Scientific Reports. 15, 18 p., 8124.

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Activation of the Nrf2 pathway by sulforaphane improves hypoglycaemia-induced cognitive impairment in a rodent model of Type 1 diabetes

Merchant, H., Forteath, C., Gallagher, J., Dinkova-Kostova, A., Ashford, M., McCrimmon, R. & McNeilly, A. (Lead / Corresponding author), 4 Mar 2025, In: Antioxidants. 14, 3, 15 p., 308.

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A Digital Tool for Clinical Evidence-Driven Guideline Development by Studying Properties of Trial Eligible and Ineligible Populations: Development and Usability Study

Mumtaz, S., McMinn, M., Cole, C., Gao, C., Hall, C., Guignard-Duff, M., Huang, H., McAllister, D. A., Morales, D. R., Jefferson, E. (Lead / Corresponding author) & Guthrie, B., 16 Jan 2025, In: Journal of Medical Internet Research. 27, e52385.

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A disease-specific convergence of host and Epstein–Barr virus genetics in multiple sclerosis

Mechelli, R. (Lead / Corresponding author), Umeton, R., Bellucci, G., Bigi, R., Rinaldi, V., Angelini, D. F., Guerrera, G., Pignalosa, F. C., Ilari, S., Patrone, M., Srinivasan, S., Cerono, G., Romano, S., Buscarinu, M. C., Martire, S., Malucchi, S., Landi, D., Lorefice, L., Umeton, R. P. & Anastasiadou, E. & 21 others, Trivedi, P., Fornasiero, A., Ferraldeschi, M., IMSGC WTCCC2, Sapio, A. D., Marfia, G., Cocco, E., Centonze, D., Uccelli, A., Silvestre, D. D., Mauri, P., de Candia, P., D’Alfonso, S., Battistini, L., Farina, C., Magliozzi, R., Reynolds, R., Baranzini, S. E., Matarese, G., Salvetti, M. (Lead / Corresponding author) & Ristori, G., 8 Apr 2025, In: Proceedings of the National Academy of Sciences of the United States of America. 122, 14, 11 p., e2418783122.

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A five-drug class model using routinely available clinical features to optimise prescribing in type 2 diabetes: a prediction model development and validation study

Dennis, J. M. (Lead / Corresponding author), Young, K. G., Cardoso, P., Güdemann, L. M., McGovern, A. P., Farmer, A., Holman, R. R., Sattar, N., McKinley, T. J., Pearson, E. R., Jones, A. G., Shields, B. M. & Hattersley, A. T., 25 Feb 2025, (E-pub ahead of print) In: The Lancet. 14 p.

Research output: Contribution to journal › Article › peer-review

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A genome-annotated bacterial collection of the plant food system microbiota

Pietrantonio, L., Devers-Lamrani, M., Thorpe, P., Arnton, K., Robertson-Albertyn, S., Savojardo, C., Hartmann, A., Martin-Laurent, F., Abbott, J. & Bulgarelli, D. (Lead / Corresponding author), 14 Jan 2025, (E-pub ahead of print) In: Microbiology Resource Announcements. 6 p., e01221-24.

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A genome-wide association study identifies genetic variants associated with hip pain in the UK Biobank cohort (N=221,127)

Pan, Q., Tao, Y., Ca, T., Veluchamy, A., Hebert, H. L., Zhu, P., Haque, M., Dottorini, T., Colvin, L. A., Smith, B. H. (Lead / Corresponding author) & Meng, W. (Lead / Corresponding author), 22 Jan 2025, (E-pub ahead of print) In: Scientific Reports. 15, 1, p. 2812 15 p., 2812.

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A greener Green Belt? Co-developing exploratory scenarios for contentious peri-urban landscapes

Kirby, M. G. (Lead / Corresponding author), Scott, A. J. & Walsh, C. L., Mar 2025, In: Landscape and Urban Planning. 255, 16 p., 105268.

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AI-driven predictive models for sustainability

Olawumi, M. A. & Oladapo, B. I., Jan 2025, In: Journal of Environmental Management. 373, 12 p., 123472.

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Alienation and/or Anomie in Pharmacists: A Systematic Review and Narrative Synthesis of the International Literature

Forsyth, P., Maguire, B., Carey, J., O'Brien, R., Maguire, J., Giblin, L., O’Hare, R., Rushworth, G. F., Cunningham, S. G. & Radley, A., 29 Jan 2025, (E-pub ahead of print) In: Research in Social and Administrative Pharmacy.

Research output: Contribution to journal › Article › peer-review

A meta-analysis of knowledge hiding behavior in organizations: Antecedents, consequences, and boundary conditions

Shen, Y., Lythreatis, S., Singh, S. K. (Lead / Corresponding author) & Cooke, F. L., Jan 2025, In: Journal of Business Research. 186, 18 p., 114963.

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6 Citations (Scopus)

54 Downloads (Pure)

A microhistory of accounting at the University of Dundee

Cordina, R., Dey, C. (Lead / Corresponding author), Fordyce, A. & Power, D., 26 Feb 2025, (E-pub ahead of print) In: Management & Organizational History. 29 p.

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A Moving and Exhausting Cosmos: A Discussion on Entropy

Nail, T. & White, J. (Lead / Corresponding author), 3 Jan 2025, In: Technophany: A Journal for Philosophy and Technology. 2, 2, p. 1-14 14 p.

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An analysis of country-by-country data for EU banks: an investigation of bank performance and risk

Cordina, R., Kourtzidis, S. (Lead / Corresponding author), Power, D. M. & Tzeremes, N. G., 8 Jan 2025, (E-pub ahead of print) In: Review of Quantitative Finance and Accounting. 27 p., 106202.

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An efficient damage-plasticity DEM contact model for highly porous rocks

Zheng, J. & Ciantia, M. (Lead / Corresponding author), 19 Feb 2025, In: Rock Mechanics and Rock Engineering. 22 p.

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An introduction to computational argumentation research from a human argumentation perspective

Ruiz-Dolz, R. (Lead / Corresponding author), Heras, S. & Garcia-Fornes, A., 13 Feb 2025, (E-pub ahead of print) In: Autonomous Agents and Multi-Agent Systems. 39, 1, 59 p., 11.

Research output: Contribution to journal › Article › peer-review

A novel method for assessing the shedding of fibre in forensic science: investigating the effects of washing

Galais, V. (Lead / Corresponding author), Wilson, S., Dugard, P., Gannicliffe , C., Murphy, B., Nic Daeid, N. & Menard, H., Feb 2025, In: Forensic Science International. 367, 15 p., 112369.

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Anti-Apartheid at the periphery: a case-study of grassroots activism in Dundee, 1967-1990

Graham, M. (Lead / Corresponding author) & Fevre, C., 9 Jan 2025, In: Modern British History. 36, 1, 18 p., hwae064.

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Antibiotic prescribing for care-home residents: a population-based, cross-classified multilevel analysis in Scotland, UK

De Souza, N., Guthrie, B., Grant, S., Lorencatto, F., Dickson, J., Herbec, A., Hughes, C., Sneddon, J., Donnan, P. T. & Marwick, C. A. (Lead / Corresponding author), 9 Jan 2025, In: Age and Ageing. 54, 1, 11 p., afae288.

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3 Citations (Scopus)

20 Downloads (Pure)

A patent review of von Hippel-Lindau (VHL)-recruiting chemical matter: E3 Ligase Ligands for PROTACs and targeted protein degradation (2019-present)

Urbina Teixidor, A., Hallatt, A., Robertson, J. & Ciulli, A. (Lead / Corresponding author), 6 Feb 2025, (E-pub ahead of print) In: Expert Opinion on Therapeutic Patents. 35, 3, p. 197-238 42 p.

Research output: Contribution to journal › Article › peer-review

A pipeline for harmonising NHS Scotland laboratory data to enable national-level analyses

Gao, C., Mumtaz, S., McCall, S., O'Sullivan, K., McGilchrist, M., Morales, D. R., Hall, C., Wilde, K., Mayor, C., Linksted, P., Harrison, K., Cole, C. (Lead / Corresponding author) & Jefferson, E. (Lead / Corresponding author), Feb 2025, In: Journal of Biomedical Informatics. 162, p. 104771 104771.

Research output: Contribution to journal › Article › peer-review

Apple Seeds: R.J. Morris’s Pedagogy in History and Computing

Morton, G. (Lead / Corresponding author), 11 Feb 2025, (E-pub ahead of print) In: Urban History. 5 p.

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A reciprocal relationship between markers of genomic DNA damage and alpha-synuclein pathology in dementia with Lewy bodies

Koss, D. J. (Lead / Corresponding author), Todd, O., Menon, H., Anderson, Z., Yang, T., Findlay, L., Graham, B., Palmowski, P., Porter, A., Morrice, N., Walker, L., Attems, J., Ghanem, S. S., El-Agnaf, O., LeBeau, F. E. N., Erskine, D. & Outeiro, T. F. (Lead / Corresponding author), 20 Mar 2025, In: Molecular Neurodegeneration. 20, 25 p., 34.

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A relational approach to co-create Advance Care Planning with and for people living with dementia: a narrative study

Phenwan, T. (Lead / Corresponding author), Sixsmith, J., McSwiggan, L. & Buchanan, D., 8 Jan 2025, (E-pub ahead of print) In: BMC Palliative Care. 24, 14 p., 5.

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1 Citation (Scopus)

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Artificial Intelligence for Academic Purposes (AIAP): Integrating AI literacy into an EAP module

Ngo, T. N. (Lead / Corresponding author) & Hastie, D., Jan 2025, In: English for Specific Purposes. 77, p. 20-38 19 p.

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2 Citations (Scopus)

158 Downloads (Pure)

Artificial targeting of autophagy components to mitochondria reveals both conventional and unconventional mitophagy pathways

Lorentzen, K., Prescott, A. & Ganley, I. (Lead / Corresponding author), 2025, In: Autophagy. 21, 2, p. 315-337 23 p.

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2 Citations (Scopus)

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Aspergillus Serologic Findings and Clinical Outcomes in Patients With Bronchiectasis: Data From the European Bronchiectasis Registry

Pollock, J., Goeminne, P. C., Aliberti, S., Polverino, E., Crichton, M. L., Ringshausen, F. C., Dhar, R., Vendrell, M., Burgel, P. R., Haworth, C. S., De Soyza, A., De Gracia, J., Bossios, A., Rademacher, J., Grünewaldt, A., McDonnell, M., Stolz, D., Sibila, O., van der Eerden, M. & Kauppi, P. & 14 others, Hill, A. T., Wilson, R., Amorim, A., Munteanu, O., Menendez, R., Torres, A., Welte, T., Blasi, F., Boersma, W., Elborn, J. S., Shteinberg, M., Dimakou, K., Chalmers, J. D. (Lead / Corresponding author) & Loebinger, M. R., 8 Apr 2025, In: Chest. 167, 4, p. 975-992 18 p.

Research output: Contribution to journal › Article › peer-review

3 Citations (Scopus)

Assessment of bronchodilator responsiveness using low-frequency impedance in type 2–high uncontrolled severe asthma

Greig, R., Stewart, K., Chan, R. & Lipworth, B. (Lead / Corresponding author), 3 Feb 2025, In: Annals of Allergy, Asthma and Immunology. 134, 2, p. 231-232 2 p.

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Open Access

Assessment of Gaze Fixations and Shifts in Children with Cerebral Palsy: A Comparison of Computer- and Object-Based Approaches

Griffiths, T. (Lead / Corresponding author), Clarke, M. T. & Swettenham, J., 28 Mar 2025, In: Journal of Clinical Medicine. 14, 7, 22 p., 2326.

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Assessment of the Enhanced Paper Grip Test for Quantifying Balance Deficits in People with Multiple Sclerosis: A Reliability and Applicability Study

Žura, E., Brecl Jakob, G., Chatzistergos, P. & Kozinc, Ž. (Lead / Corresponding author), Mar 2025, In: Multiple Sclerosis and Related Disorders. 95, 7 p., 106321.

Research output: Contribution to journal › Article › peer-review

Association between maternal mental health, the COVID-19 pandemic, and children's developmental outcomes in Scotland

Okelo, K. (Lead / Corresponding author), Marryat, L., Murray, A., King, J., Hardie, I., Boardman, J. P., Lombardo, M. V., Stock, S., Wood, R. & Auyeung, B., 27 Mar 2025, (E-pub ahead of print) In: Archives of Public Health. 83, 12 p., 82.

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A standard to report biological variation data studies: based on an expert opinion

Bartlett, B. (Lead / Corresponding author), Sandberg, S., Carobene, A., Fernández-Calle, P., Díaz-Garzón, J., Coşkun, A., Jonker, N., Galior, K., Gonzales-Lao, E., Moreno-Parro, I., Sufrate-Vergara, B., Webster, C., Itkonen, O., Marques-Garcia, F. & Aarsand, A. K., 2025, In: Clinical Chemistry and Laboratory Medicine. 63, 1, p. 52-59 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

4 Citations (Scopus)

A systematic review of the impact of artificial intelligence on educational outcomes in health professions education

Feigerlova, E. (Lead / Corresponding author), Hani, H. & Hothersall-Davies, E., 27 Jan 2025, In: BMC Medical Education. 25, 18 p., 129.

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3 Citations (Scopus)

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A Tensioned Human Skin Explant Model Used for Preliminary Assessment of Chemexfoliant-Stimulated Bioeffects

Conneely, M. J. (Lead / Corresponding author), Namkoong, J., Allison, F., Hirata Tsutsumi, S. K., Grussu, D., Willis, R., Henderson, K., Campbell, P. A., Moy, M., Lesniak, E., Wu, J. & Hickerson, R. P., Jan 2025, In: JID innovations : skin science from molecules to population health. 5, 1, 9 p., 100305.

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Athanor: Local search over abstract constraint specifications

Attieh, S., Dang, N. (Lead / Corresponding author), Jefferson, C., Miguel, I. & Nightingale, P., Mar 2025, In: Artificial Intelligence. 340, 39 p., 104277.

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Audit and Feedback Interventions for Antibiotic Prescribing in Primary Care: A Systematic Review and Meta-analysis

Xu, A. X. T., Brown, K., Schwartz, K. L., Aghlmandi, S., Alderson, S., Brehaut, J., Brown, B. C., Bucher, H. C., Clarkson, J., De Sutter, A., Francis, N. A., Grimshaw, J., Gunnarsson, R., Hallsworth, M., Hemkens, L., Høye, S., Khan, T., Lecky, D., Leung, F. & Leung, J. & 16 others, Lindbæk, M., Linder, J. A., Llor, C., Little, P., O'Connor, D., Pulcini, C., Ramlackhan, K., Ramsay, C. R., Sundvall, P.-D., Taljaard, M., Lundgren, P. T., Vellinga, A., Verbakel, J. Y., Verheij, T. J., Wikberg, C. & Ivers, N. (Lead / Corresponding author), 15 Jan 2025, In: Clinical Infectious Diseases. 10 p., ciae604.

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Autologous macrophage therapy for liver cirrhosis: a phase 2 open-label randomized controlled trial

Brennan, P., MacMillan, M., Manship, T. A., Moroni, F., Glover, A., Troland, D., MacPherson , I., Graham, C., Aird, R., Semple, S. I., Morris, D. M., Fraser, A. R., Pass, C., McGowan, N. W. A., Turner, M. L., Manson, L., Lachlan, N., Dillon, J., Kilpatrick, A. M. & Campbell, J. & 2 others, Fallowfield, J. A. & Forbes, S. J. (Lead / Corresponding author), 10 Jan 2025, (E-pub ahead of print) In: Nature Medicine. 20 p.

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4 Citations (Scopus)

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Autophagy repression by antigen and cytokines shapes mitochondrial, migration and effector machinery in CD8 T cells

Sinclair, L. V. (Lead / Corresponding author), Youdale, T., Spinelli, L., Gakovic, M., Langlands, A. J., Pathak, S., Howden, A. J. M., Ganley, I. G. & Cantrell, D. A. (Lead / Corresponding author), 27 Feb 2025, In: Nature Immunology. 26, p. 429-443 32 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Baseline characteristics of patients in the Chinese Bronchiectasis Registry (BE-China): a multicentre prospective cohort study

BE-China Registry Investigators, Xu, J.-F. (Lead / Corresponding author), Zheng, H.-Z., Lu, H.-W., Wang, L.-W., Wu, B., Lv, X.-D., Luo, H., Feng, J., Li, Y.-Y., Liu, L., Jia, J.-G., Mo, W.-Q., Gu, H.-Y., Jiang, J.-B., Wang, D.-X., Wang, B., Li, L., Yuan, Z. & Li, W. & 16 others, Xie, M., Jie, Z.-J., Fan, X.-Y., Li, D., Tian, X., Zhang, M., Guan, W.-J., Fan, H., Song, Y.-L., He, J., Chu, D.-J., Du, C.-L., Zhang, J.-Q., Cao, C., Qu, J.-M. (Lead / Corresponding author) & Chalmers, J. (Lead / Corresponding author), 4 Feb 2025, In: The Lancet Respiratory Medicine. 13, 2, p. 166-176 11 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Citation (Scopus)

Benzamide derivatives of thioacridine as DYRK2 and DYRK3 dual inhibitors

Roussel, J., Kashyap, S., Banerjee, S., Lomberget, T. (Lead / Corresponding author) & Hallé, F., 27 Mar 2025, In: ChemMedChem. e202500122.

Research output: Contribution to journal › Article › peer-review

Blurred borders. Negotiating copresence in the family home through spatio-temporal strategies for increased adult well-being.

Costa Santos, S. (Lead / Corresponding author), Parnell, R., Abo Kanon, H., Pattinson, E., Pitsikali, A. & Sarhan, H., 22 Jan 2025, (E-pub ahead of print) In: Home Cultures: The Journal of Architecture Design and Domestic Space. 25 p.

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Boosting photosynthesis opens new opportunities for agriculture sustainability and circular economy: the BEST-CROP research and innovation action

Pesaresi, P. (Lead / Corresponding author), Bono, P., Corn, S., Crosatti, C., Daniotti, S., Jensen, J. D., Frébort, I., Groli, E., Halpin, C., Hansson, M., Hensel, G., Horner, D., Houston, K., Jahoor, A., Klíma, M., Kollist, H., Lacoste, C., Laidoudi, B., Larocca, S. & Marè, C. & 15 others, Le Moigne, N., Mizzotti, C., Morosinotto, T., Oldach, K., Rossini, L., Raubach, S., Sanchez-Garcia, M., Shaw, P. D., Sonnier, R., Tondelli, A., Waugh, R., Weber, A., Yarmolinsky, D., Zeni, A. & Cattivelli, L., 5 Feb 2025, In: The Plant Journal. 21, 3, 22 p., e17264.

Research output: Contribution to journal › Article › peer-review

Bridging Research and Practice: Young Children’s Agency and Resilience in a Climate Changed World

Ward, K. (Lead / Corresponding author), Gravil, M., Sciaraffa, M. & Antonio, M., 3 Feb 2025, (E-pub ahead of print) In: Exchange. Spring 2025, 277, p. 28-32 5 p.

Research output: Contribution to journal › Article › peer-review

Broad Immunomodulatory Effects of the Dipeptidyl-peptidase-1 Inhibitor Brensocatib in Bronchiectasis: Data from the Phase 2, Double-Blind, Placebo-controlled WILLOW Trial

Johnson, E. D., Long, M. B., Perea, L., Shih, V. H., Fernandez, C., Teper, A., Cipolla, D., McIntosh, E., Galloway, R., Eke, Z., Shuttleworth, M., Hull, R., Spinou, A., De Soyza, A., Ringshausen, F. C., Goeminne, P., Lorent, N., Haworth, C., Loebinger, M. R. & Blasi, F. & 9 others, Shteinberg, M., Aliberti, S., Polverino, E., Sibila, O., Shoemark, A., Mange, K., Huang, J. T. J., Stobo, J. & Chalmers, J. D., 12 Feb 2025, (E-pub ahead of print) In: American Journal of Respiratory and Critical Care Medicine.

Research output: Contribution to journal › Article › peer-review

University of Dundee

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