Halpin, Claire

Professor

  • Professor & Personal Chair of Plant Biology and Biotechnology, Plant Sciences
  • United Kingdom

20072020

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Research Output

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2020

Barley sodium content is regulated by natural variants of the Na+ transporter HvHKT1;5

Houston, K., Qiu, J., Wege, S., Hrmova, M., Oakey, H., Qu, Y., Smith, P., Situmorang, A., Macaulay, M., Flis, P., Bayer, M., Roy, S., Halpin, C., Russell, J., Schreiber, M., Byrt, C., Gilliham, M., Salt, D. E. & Waugh, R., 22 May 2020, In : Communications Biology. 3, 1, p. 1-9 9 p., 258.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
15 Downloads (Pure)

Stimulation of homologous recombination in plants expressing heterologous recombinases

Barakate, A., Keir, E., Oakey, H. & Halpin, C., 16 Jul 2020, In : BMC Plant Biology. 10 p., 336.

Research output: Contribution to journalArticle

Open Access
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4 Downloads (Pure)
2019

A comparison of mainstream genotyping platforms for the evaluation and use of barley genetic resources

Darrier, B., Russell, J., Milner, S. G., Hedley, P. E., Shaw, P. D., Macaulay, M., Ramsay, L., Halpin, C., Mascher, M., Fleury, D. L., Langridge, P., Stein, N. & Waugh, R., 26 Apr 2019, In : Frontiers in Plant Science. 10, p. 1-14 14 p., 544.

Research output: Contribution to journalArticle

Open Access
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6 Citations (Scopus)
97 Downloads (Pure)

BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq

Rapazote-Flores, P., Bayer, M., Milne, L., Mayer, C-D., Fuller, J., Guo, W., Hedley, P. E., Morris, J., Halpin, C., Kam, J., McKim, S. M., Zwirek, M., Casao, M. C., Barakate, A., Schreiber, M., Stephen, G., Zhang, R., Brown, J. W. S., Waugh, R. & Simpson, C. G., 11 Dec 2019, In : BMC Genomics. 20, p. 1-17 17 p., 968.

Research output: Contribution to journalArticle

Open Access
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2 Citations (Scopus)
51 Downloads (Pure)

desynaptic5 carries a spontaneous semi-dominant mutation affecting Disrupted Meiotic cDNA 1 in barley

Colas, I., Barakate, A., Macaulay, M., Schreiber, M., Stephens, J., Vivera, S., Halpin, C., Waugh, R. & Ramsay, L., 1 May 2019, In : Journal of Experimental Botany. 70, 10, p. 2683-2698 16 p.

Research output: Contribution to journalArticle

Open Access
File
3 Citations (Scopus)
84 Downloads (Pure)

RNAi-suppression of barley caffeic acid O-methyltransferase modifies lignin despite redundancy in the gene family

Daly, P., McClellan, C., Maluk, M., Oakey, H., Lapierre, C., Waugh, R., Stephens, J., Marshall, D., Barakate, A., Tsuji, Y., Goeminne, G., Vanholme, R., Boerjan, W., Ralph, J. & Halpin, C., Mar 2019, In : Plant Biotechnology Journal. 17, 3, p. 594-607 14 p.

Research output: Contribution to journalArticle

Open Access
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3 Citations (Scopus)
122 Downloads (Pure)
2016

A spontaneous mutation in MutL-Homolog 3 (HvMLH3) affects synapsis progression and crossover resolution in the barley desynaptic mutant des10

Colas, I., Macaulay, M., Higgins, J. D., Phillips, D., Barakate, A., Posch, M., Armstrong, S., Franklin, F. C. H., Halpin, C., Waugh, R. & Ramsay, L., Nov 2016, In : New Phytologist. 212, 3, p. 693-707 15 p.

Research output: Contribution to journalArticle

Open Access
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15 Citations (Scopus)
112 Downloads (Pure)

Genomic Selection in multi-environment crop trials

Oakey, H., Cullis, B., Thompson, R., Comradan, J., Halpin, C. & Waugh, R., 1 May 2016, In : G3 : Genes, Genomes, Genetics. 6, 5, p. 1313-1326 14 p.

Research output: Contribution to journalArticle

Open Access
File
32 Citations (Scopus)
162 Downloads (Pure)
2015

Evolutionary dynamics of the cellulose synthase gene superfamily in grasses

Schwerdt, J. G., MacKenzie, K., Wright, F., Oehme, D., Wagner, J. M., Harvey, A. J., Shirley, N. J., Burton, R. A., Schreiber, M., Halpin, C., Zimmer, J., Marshall, D. F., Waugh, R. & Fincher, G. B., Jul 2015, In : Plant Physiology. 168, 3, p. 968-983 16 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)

Plant lignin content altered by soil microbial community

Bennett, A. E., Grussu, D., Kam, J., Caul, S. & Halpin, C., Apr 2015, In : New Phytologist. 206, 1, p. 166-174 9 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)
2014

A genome wide association scan for (1,3;1,4)-β-glucan content in the grain of contemporary 2-row Spring and Winter barleys

Houston, K., Russell, J., Schreiber, M., Halpin, C., Oakey, H., Washington, J. M., Booth, A., Shirley, N., Burton, R. A., Fincher, G. B. & Waugh, R., 17 Oct 2014, In : BMC Genomics. 15, 15 p., 907.

Research output: Contribution to journalArticle

Open Access
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32 Citations (Scopus)
156 Downloads (Pure)

In search of clean, affordable energy

Bao, Z., Benson, S. M., Cui, Y., Dionne, J. A., Maher, K., Boerjan, W., Halpin, C., Nelson, R., Nichols, D., Ralph, J. & Ramakrishnan, T. S., 2014, In : Oilfield Review. 26, 1, p. 4-15 12 p.

Research output: Contribution to journalArticle

The Barley Genome Sequence Assembly Reveals Three Additional Members of the CslF (1,3;1,4)-b-Glucan Synthase Gene Family

Schreiber, M., Wright, F., MacKenzie, K., Hedley, P. E., Schwerdt, J. G., Little, A., Burton, R. A., Fincher, G. B., Marshall, D., Waugh, R. & Halpin, C., 3 Mar 2014, In : PLoS ONE. 9, 3, p. 1-9 9 p., e90888.

Research output: Contribution to journalArticle

Open Access
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27 Citations (Scopus)
136 Downloads (Pure)

The Synaptonemal Complex Protein ZYP1 Is Required for Imposition of Meiotic Crossovers in Barley

Barakate, A., Higgins, J. D., Vivera, S., Stephens, J., Perry, R. M., Ramsay, L., Colas, I., Oakey, H., Waugh, R., Franklin, F. C. H., Armstrong, S. J. & Halpin, C., Feb 2014, In : Plant Cell. 26, 2, p. 729-740 12 p.

Research output: Contribution to journalArticle

29 Citations (Scopus)
2013

Caffeoyl shikimate esterase (CSE) is an enzyme in the lignin biosynthetic pathway in Arabidopsis

Vanholme, R., Cesarino, I., Rataj, K., Xiao, Y., Sundin, L., Goeminne, G., Kim, H., Cross, J., Morreel, K., Araujo, P., Welsh, L., Haustraete, J., McClellan, C., Vanholme, B., Ralph, J., Simpson, G. G., Halpin, C. & Boerjan, W., 6 Sep 2013, In : Science. 341, 6150, p. 1103-1106 4 p.

Research output: Contribution to journalArticle

219 Citations (Scopus)

Cell biology: up against the wall

Halpin, C., 2 Dec 2013, In : Current Biology. 23, 23, p. R1048-1050 3 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Editor's Choice: Evaluating the potential for adverse interactions within genetically engineered breeding stacks

Steiner, H-Y., Halpin, C., Jez, J. M., Kough, J., Parrott, W., Underhill, L., Weber, N. & Curtis Hannah, L., 2013, In : Plant Physiology. 161, 4, p. 1587-1594 8 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)

Identification of crop cultivars with consistently high lignocellulosic sugar release requires the use of appropriate statistical design and modelling

Oakey, H., Shafiei, R., Comadran, J., Uzrek, N., Cullis, B., Gomez, L. D., Whitehead, C., McQueen-Mason, S. J., Waugh, R. & Halpin, C., 21 Dec 2013, In : Biotechnology for Biofuels. 6, 1, p. 1-12 12 p., 185.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
131 Downloads (Pure)

Variation in the interaction between alleles of HvAPETALA2 and microRNA172 determines the density of grains on the barley inflorescence

Houston, K., McKim, S. M., Comadran, J., Bonar, N., Druka, I., Uzrek, N., Cirillo, E., Guzy-Wrobelska, J., Collins, N. C., Halpin, C., Hansson, M., Dockter, C., Druka, A. & Waugh, R., 8 Oct 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 41, p. 16675-16680 6 p.

Research output: Contribution to journalArticle

71 Citations (Scopus)
2012

A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis

Vanholme, R., Storme, V., Vanholme, B., Sundin, L., Christensen, J. H., Goeminne, G., Halpin, C., Rohde, A., Morreel, K. & Boerjan, W., 2012, In : Plant Cell. 24, 9, p. 3506-3529 24 p.

Research output: Contribution to journalArticle

187 Citations (Scopus)

Crop genome plasticity and its Relevance to food and feed safety of genetically engineered breeding stacks

Weber, N., Halpin, C., Curtis Hannah, L., Jez, J. M., Kough, J. & Parrott, W., Dec 2012, In : Plant Physiology. 160, 4, p. 1842-1853 12 p.

Research output: Contribution to journalArticle

59 Citations (Scopus)
8 Citations (Scopus)

Spatiotemporal asymmetry of the meiotic program underlies the predominantly distal distribution of meiotic crossovers in barley

Higgins, J. D., Perry, R. M., Barakate, A., Ramsay, L., Waugh, R., Halpin, C., Armstrong, S. J. & Franklin, F. C. H., Oct 2012, In : Plant Cell. 24, 10, p. 4096-4109 14 p.

Research output: Contribution to journalArticle

88 Citations (Scopus)
2011

Syringyl lignin is unaltered by severe sinapyl alcohol dehydrogenase suppression in tobacco

Barakate, A., Stephens, J., Goldie, A., Hunter, W. N., Marshall, D., Hancock, R. D., Lapierre, C., Morreele, K., Boerjane, W. & Halpin, C., Dec 2011, In : Plant Cell. 23, 12, p. 4492-4506 15 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)
2010

Automated saccharification assay for determination of digestibility in plant materials

Gomez, L. D., Whitehead, C., Barakate, A., Halpin, C. & McQueen-Mason, S. J., 27 Oct 2010, In : Biotechnology for Biofuels. 3, 12 p., 23.

Research output: Contribution to journalArticle

52 Citations (Scopus)

Below-ground herbivory and root toughness: a potential model system using lignin-modified tobacco

Johnson, S. N., Hallett, P. D., Gillespie, T. L. & Halpin, C., Jun 2010, In : Physiological Entomology. 35, 2, p. 186-191 6 p.

Research output: Contribution to journalArticle

26 Citations (Scopus)
2008

Tissue culture propagation alters plant-microbe interactions in tobacco rhizosphere

Tilston, E. L., Halpin, C. & Hopkins, D. W., Jul 2008, In : Biology and Fertility of Soils. 44, 6, p. 897-901 5 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2007

A novel cleavage site within the potato leafroll virus P1 polyprotein

Li, X., Halpin, C. & Ryan, M. D., May 2007, In : Journal of General Virology. 88, 5, p. 1620-1623 4 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Ecological impacts of trees with modified lignin

Halpin, C., Thain, S. C., Tilston, E. L., Guiney, E., Lapierre, C. & Hopkins, D. W., 1 Apr 2007, In : Tree Genetics and Genomes. 3, 2, p. 101-110 10 p.

Research output: Contribution to journalArticle

36 Citations (Scopus)