Burel, Jean-Marie

Dr

  • United Kingdom

  • 713 Citations
  • 6 h-Index
20052019

Research output per year

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Research Output

  • 713 Citations
  • 6 h-Index
  • 5 Article
  • 3 Conference contribution
  • 2 Other chapter contribution
  • 1 Editorial
2019

Bringing Open Data to Whole Slide Imaging

Besson, S., Leigh, R., Linkert, M., Allan, C., Burel, J-M., Carroll, M., Gault, D., Gozim, R., Li, S., Lindner, D., Moore, J., Moore, W., Walczysko, P., Wong, F. & Swedlow, J., 2019, Digital Pathology: 15th European Congress, ECDP 2019, Warwick, UK, April 10–13, 2019, Proceedings. Reyes-Aldasoro, C. C., Janowczyk, A., Veta, M., Bankhead, P. & Sirinukunwattana, K. (eds.). Switzerland: Springer , p. 3-10 8 p. (Lecture Notes in Computer Science; vol. 11435).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Open Access
File
134 Downloads (Pure)
2016

Metadata management for high content screening in OMERO

Li, S., Besson, S., Blackburn, C., Carroll, M., Ferguson, R. K., Flynn, H., Gillen, K., Leigh, R., Lindner, D., Linkert, M., Moore, W. J., Ramalingam, B., Rozbicki, E., Rustici, G., Tarkowska, A., Walczysko, P., Williams, E., Allan, C., Burel, J. M., Moore, J. & 1 others, Swedlow, J. R., 1 Mar 2016, In : Methods. 96, p. 27-32 6 p.

Research output: Contribution to journalArticle

Open Access
File
14 Citations (Scopus)
124 Downloads (Pure)

The Open Microscopy Environment: Open image informatics for the biological sciences

Blackburn, C., Allan, C., Besson, S., Burel, J. M., Carroll, M., Ferguson, R. K., Flynn, H., Gault, D., Gillen, K., Leigh, R., Leo, S., Li, S., Lindner, D., Linkert, M., Moore, J., Moore, W. J., Ramalingam, B., Rozbicki, E., Rustici, G., Tarkowska, A. & 3 others, Walczysko, P., Williams, E. & Swedlow, J. R., 26 Jul 2016, Software and Cyberinfrastructure for Astronomy IV. SPIE-International Society for Optical Engineering, Vol. 9913. 991324

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2015

OMERO and Bio-Formats 5: flexible access to large bioimaging datasets at scale

Moore, J., Linkert, M., Blackburn, C., Carroll, M., Ferguson, G., Flynn, H., Gillen, K., Leigh, R., Li, S., Lindner, D., Moore, W., Patterson, A., Pindelski, B., Ramalingam, B., Rozbicki, E., Tarkowska, A., Walczysko, P., Allan, C., Burel, J-M. & Swedlow, J. R., 2015, Medical Imaging 2015: Image Processing. Ourselin, S. & Styner, M. A. (eds.). Bellingham: SPIE-International Society for Optical Engineering, 941307. (Proceedings of SPIE; vol. 9413).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

4 Citations (Scopus)

Publishing and sharing multi-dimensional image data with OMERO

Burel, J-M., Besson, S., Blackburn, C., Carroll, M., Ferguson, R., Flynn, H., Gillen, K., Leigh, R., Li, S., Lindner, D., Linkert, M., Moore, W. J., Ramalingam, B., Rozbicki, E., Tarkowska, A., Walczysko, P., Allan, C., Moore, J. & Swedlow, J. R., Oct 2015, In : Mammalian Genome : Official Journal of the International Mammalian Genome Society. 26, 9, p. 441-447 7 p.

Research output: Contribution to journalArticle

Open Access
File
9 Citations (Scopus)
175 Downloads (Pure)
2012

OMERO: flexible, model-driven data management for experimental biology

Allan, C., Burel, J-M., Moore, J., Blackburn, C., Linkert, M., Loynton, S., MacDonald, D., Moore, W. J., Neves, C., Patterson, A., Porter, M., Tarkowska, A., Loranger, B., Avondo, J., Lagerstedt, I., Lianas, L., Leo, S., Hands, K., Hay, R. T., Patwardhan, A. & 4 others, Best, C., Kleywegt, G. J., Zanetti, G. & Swedlow, J. R., 1 Mar 2012, In : Nature Methods. 9, 3, p. 245-253 9 p.

Research output: Contribution to journalArticle

198 Citations (Scopus)
2010

Metadata matters: access to image data in the real world

Linkert, M., Rueden, C. T., Allan, C., Burel, J-M., Moore, W., Patterson, A., Loranger, B., Moore, J., Neves, C., MacDonald, D., Tarkowska, A., Sticco, C., Hill, E., Rossner, M., Eliceiri, K. W. & Swedlow, J. R., 31 May 2010, In : Journal of Cell Biology. 189, 5, p. 777-782 6 p.

Research output: Contribution to journalEditorial

Open Access
File
310 Citations (Scopus)
227 Downloads (Pure)
2009

The open microscopy environment: informatics and quantitative analysis for biological microscopy

Swedlow, J. R., Allan, C., Burel, J-M., Linkert, M., Loranger, B., MacDonald, D., Moore, W. J., Patterson, A. J., Rueden, C., Tarkowska, A., Goldberg, I. G. & Eliceiri, K. W., Jul 2009, In : Microscopy and Microanalysis. 15, p. 1520-1521 2 p.

Research output: Contribution to journalArticle

Towards a project community approach to academic scientific software development

Loynton, S., Sloan, D., Burel, J-M. & MacAulay, C., 1 Jan 2009, e-science 2009: proceedings of the 2009 5th IEEE International Conference on e-Science Workshops. Institute of Electrical and Electronics Engineers, p. 120-124 5 p.

Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

1 Citation (Scopus)
2008

Open tools for storage and management of quantitative image data

Moore, J., Allan, C., Burel, J-M., Loranger, B., MacDonald, D., Monk, J. & Swedlow, J. R., 2008, Fluorescent Proteins. 2nd ed. San Diego: Academic Press, Vol. 85. p. 555-+ 20 p. (Methods in Cell Biology; vol. 85).

Research output: Chapter in Book/Report/Conference proceedingOther chapter contribution

25 Citations (Scopus)
2005

The Open Microscopy Environment (OME) Data Model and XML file: open tools for informatics and quantitative analysis in biological imaging

Goldberg, I. G., Allan, C., Burel, J-M., Creager, D., Falconi, A., Hochheiser, H., Johnston, J., Mellen, J., Sorger, P. K. & Swedlow, J. R., 2005, In : Genome Biology. 6, 5, R47.

Research output: Contribution to journalArticle

152 Citations (Scopus)