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Personal profile

Education/Academic qualification

Doctor of Philosophy, University of Cambridge

Bachelor of Science, University of Edinburgh

Keywords

  • QH301 Biology
  • gene expression
  • RNA splicing

Fingerprint Fingerprint is based on mining the text of the person's scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

  • 7 Similar Profiles
Alternative Splicing Medicine & Life Sciences
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Circadian Clocks Medicine & Life Sciences
Proteins Medicine & Life Sciences
Genes Medicine & Life Sciences
RNA Medicine & Life Sciences
Hordeum Medicine & Life Sciences

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Research Output 1989 2018

2 Citations

How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY)

James, A. B., Calixto, C. P. G., Tzioutziou, N. A., Guo, W., Zhang, R., Simpson, C. G., Jiang, W., Nimmo, G. A., Brown, J. W. S. & Nimmo, H. G., 13 Mar 2018, In : Plant, Cell & Environment. 12 p.

Research output: Contribution to journalArticle

Open Access
File
Hypocotyl
hypocotyls
Protein Isoforms
Temperature
temperature
23 Citations

A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing

Zhang, R., Calixto, C. P. G., Marquez, Y., Venhuizen, P., Tzioutziou, N. A., Guo, W., Spensley, M., Entizne, J. C., Lewandowska, D., ten Have, S., Frei dit Frey, N., Hirt, H., James, A. B., Nimmo, H. G., Barta, A., Kalyna, M. & Brown, J. W. S., 19 May 2017, In : Nucleic Acids Research. 45, 9, p. 5061-5073 13 p.

Research output: Contribution to journalArticle

Open Access
File
Alternative Splicing
Transcriptome
Arabidopsis
Protein Isoforms
RNA
3 Citations

Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size

Guo, W., Calixto, C. P. G., Tzioutziou, N., Lin, P., Waugh, R., Brown, J. W. S. & Zhang, R., 19 Jun 2017, In : BMC Systems Biology. 11, p. 1-12 12 p., 62.

Research output: Contribution to journalArticle

Open Access
File
Correlation methods
Partial Correlation
Electric network analysis
Sample Size
Genes
3 Citations

High-quality reference transcript datasets hold the key to transcript-specific RNA-sequencing analysis in plants

Brown, J. W. S., Calixto, C. P. G. & Zhang, R., Jan 2017, In : New Phytologist. 213, 2, p. 525-530 6 p.

Research output: Contribution to journalReview article

RNA Sequence Analysis
alternative splicing
Alternative Splicing
sequence analysis
RNA
2 Citations

TSIS: an R package to infer alternative splicing isoform switches for time-series data

Guo, W., Calixto, C. P. G., Brown, J. W. S. & Zhang, R., 15 Oct 2017, In : Bioinformatics. 33, 20, p. 3308-3310 3 p.

Research output: Contribution to journalArticle

Open Access
File
Alternative Splicing
Time Series Data
Time series
Switch
Protein Isoforms

Thesis

Alternative splicing in the regulation of the barley circadian clock

Author: Calixto, C. P. G., 2013

Supervisor: Brown, J. (Supervisor)

Student thesis: Doctoral ThesisDoctor of Philosophy

File

Computational analysis and method development for high throughput transcriptomics and transcriptional regulatory inference in plants

Author: Guo, W., 2018

Supervisor: Zhang, R. (Supervisor), Brown, J. (Supervisor), Waugh, R. (Supervisor) & Lin, P. (Supervisor)

Student thesis: Doctoral ThesisDoctor of Philosophy

Investigating the role of Arabidopsis flowering regulator FPA in plant development and control of alternative polyadenylation

Author: Lishak, E., 2017

Supervisor: Brown, J. (Supervisor) & Simpson, G. (Supervisor)

Student thesis: Master's ThesisMaster of Philosophy

File

Regulation of low-temperature alternative splicing in the Arabidopsis thaliana circadian clock genes

Author: Tzioutziou, N., 2016

Supervisor: Brown, J. (Supervisor)

Student thesis: Doctoral ThesisDoctor of Philosophy

The Effect of Low Temperature on Alternative Splicing in Barley

Author: Raeside, A., 2016

Supervisor: Brown, J. (Supervisor) & Simpson, C. G. (External person) (Supervisor)

Student thesis: Doctoral ThesisDoctor of Philosophy