Katarzyna Knop

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7 Article
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RAM is upregulated during T cell activation and is required for RNA cap formation and gene expression
Knop, K., Gomez-Moreira, C., Galloway, A., Ditsova, D. & Cowling, V. H. (Lead / Corresponding author), 2024, In: Discovery Immunology. 3, 1, p. 1-11 11 p., kyad021.
Research output: Contribution to journal › Article › peer-review

Open Access
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59 Downloads (Pure)
Chromosome evolution and the genetic basis of agronomically important traits in greater yam
Bredeson, J. V., Lyons, J. B., Oniyinde, I. O., Okereke, N. R., Kolade, O., Nnabue, I., Nwadili, C. O., Hřibová, E., Parker, M., Nwogha, J., Shu, S., Carlson, J., Kariba, R., Muthemba, S., Knop, K., Barton, G. J., Sherwood, A. V., Lopez-Montes, A., Asiedu, R. & Jamnadass, R. & 13 others, Muchugi, A., Goodstein, D., Egesi, C. N., Featherston, J., Asfaw, A., Simpson, G. G., Doležel, J., Hendre, P. S., Van Deynze, A., Kumar, P. L., Obidiegwu, J. E. (Lead / Corresponding author), Bhattacharjee, R. (Lead / Corresponding author) & Rokhsar, D. S. (Lead / Corresponding author), 14 Apr 2022, In: Nature Communications. 13, 16 p., 2001.
Research output: Contribution to journal › Article › peer-review

Open Access
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44 Citations (Scopus)

179 Downloads (Pure)
m⁶A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5' splice site
Parker, M. T., Soanes, B. K., Kusakina, J., Larrieu, A., Knop, K., Joy, N., Breidenbach, F., Sherwood, A. V., Barton, G. J., Fica, S. M., Davies, B. H. (Lead / Corresponding author) & Simpson, G. G. (Lead / Corresponding author), 30 Dec 2022, In: eLife. 11, 34 p., e78808.
Research output: Contribution to journal › Article › peer-review

Open Access
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32 Citations (Scopus)

148 Downloads (Pure)
2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing
Parker, M. T. (Lead / Corresponding author), Knop, K., Barton, G. J. & Simpson, G. G. (Lead / Corresponding author), 1 Mar 2021, In: Genome Biology. 22, 1, 24 p., 72.
Research output: Contribution to journal › Article › peer-review

Open Access
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14 Citations (Scopus)

250 Downloads (Pure)
Chromosome evolution and the genetic basis of agronomically important traits in greater yam
Bredeson, J. V., Lyon, J. B., Oniyinde, I. O., Okereke, N. R., Kolade, O., Nnabue, I., Nwadili, C. O., Hřibová, E., Parker, M., Nwogha, J., Shu, S., Carlson, J., Kariba, R., Muthemba, S., Knop, K., Barton, G. J., Sherwood, A. V., Lopez-Montes, A., Asiedu, R. & Jamnadass, R. & 11 others, Goodstein, D., Egesi, C. N., Featherston, J., Simpson, G., Doležel, J., Hendre, P. S., Van Deynze, A., Kumar, P. L., Obidiegwu, J. E. (Lead / Corresponding author), Bhattacharjee, R. (Lead / Corresponding author) & Rokhsar, D. S. (Lead / Corresponding author), 15 Apr 2021, Cold Spring Harbor Laboratory: BioRxiv, p. 1-36, 36 p.
Research output: Working paper/Preprint › Preprint

Nanopore direct RNA sequencing of FPA mutants and overexpressors
Parker, M. (Creator), Knop, K. (Creator), Zacharaki, V. (Creator), Sherwood, A. (Creator), Tome, D. (Creator), Yu, X. (Creator), Martin, P. (Creator), Beynon, J. (Creator), Michaels, S. (Creator), Barton, G. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 20 Nov 2020
https://www.ebi.ac.uk/ena/browser/view/PRJEB41451
Dataset
Helicos direct RNA sequencing of FPA mutants and overexpressors
Parker, M. (Creator), Knop, K. (Creator), Zacharaki, V. (Creator), Barton, G. (Creator) & Simpson, G. (Creator), Zenodo, 20 Dec 2020
DOI: 10.5281/zenodo.4309752
Dataset
Nanopore direct RNA sequencing of the Arabidopsis RNA exosome mutant hen2-2
Parker, M. (Creator), Knop, K. (Creator), Barton, G. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 16 Dec 2020
https://www.ebi.ac.uk/ena/browser/view/PRJEB41381
Dataset
Mutant screen of early flowering Arabidopsis EMS mutants with increased MAF2 intron retention
Parker, M. (Creator), Soanes, B. K. (Creator), Kusakina, J. (Creator), Larrieu, A. (Creator), Knop, K. (Creator), Joy, N. (Creator), Breidenbach, F. (Creator), Sherwood, A. (Creator), Barton, G. (Creator), Fica, S. M. (Creator), Davies, B. H. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 5 Apr 2022
https://www.ebi.ac.uk/ena/browser/view/PRJEB51468
Dataset
Nanopore direct RNA sequencing of Col-0 and fio1-3 mutant Arabidopsis
Parker, M. (Creator), Soanes, B. K. (Creator), Kusakina, J. (Creator), Larrieu, A. (Creator), Knop, K. (Creator), Joy, N. (Creator), Breidenbach, F. (Creator), Sherwood, A. (Creator), Barton, G. (Creator), Fica, S. M. (Creator), Davies, B. H. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 5 Apr 2022
https://www.ebi.ac.uk/ena/browser/view/PRJEB51364
Dataset

Knop, Katarzyna

Fingerprint

Collaborations and top research areas from the last five years

Dive into details

RAM is upregulated during T cell activation and is required for RNA cap formation and gene expression

Chromosome evolution and the genetic basis of agronomically important traits in greater yam

m⁶A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5' splice site

2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing

Chromosome evolution and the genetic basis of agronomically important traits in greater yam

Nanopore direct RNA sequencing of FPA mutants and overexpressors

Helicos direct RNA sequencing of FPA mutants and overexpressors

Nanopore direct RNA sequencing of the Arabidopsis RNA exosome mutant hen2-2

Mutant screen of early flowering Arabidopsis EMS mutants with increased MAF2 intron retention

Nanopore direct RNA sequencing of Col-0 and fio1-3 mutant Arabidopsis

Knop, Katarzyna

Fingerprint

Collaborations and top research areas from the last five years

Research output

Datasets