Katarzyna Knop

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7 Article
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RAM is upregulated during T cell activation and is required for RNA cap formation and gene expression
Knop, K., Gomez-Moreira, C., Galloway, A., Ditsova, D. & Cowling, V. H. (Lead / Corresponding author), 2024, In: Discovery Immunology. 3, 1, p. 1-11 11 p., kyad021.
Research output: Contribution to journal › Article › peer-review

Open Access
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32 Downloads (Pure)
Chromosome evolution and the genetic basis of agronomically important traits in greater yam
Bredeson, J. V., Lyons, J. B., Oniyinde, I. O., Okereke, N. R., Kolade, O., Nnabue, I., Nwadili, C. O., Hřibová, E., Parker, M., Nwogha, J., Shu, S., Carlson, J., Kariba, R., Muthemba, S., Knop, K., Barton, G. J., Sherwood, A. V., Lopez-Montes, A., Asiedu, R. & Jamnadass, R. & 13 others, Muchugi, A., Goodstein, D., Egesi, C. N., Featherston, J., Asfaw, A., Simpson, G. G., Doležel, J., Hendre, P. S., Van Deynze, A., Kumar, P. L., Obidiegwu, J. E. (Lead / Corresponding author), Bhattacharjee, R. (Lead / Corresponding author) & Rokhsar, D. S. (Lead / Corresponding author), 14 Apr 2022, In: Nature Communications. 13, 16 p., 2001.
Research output: Contribution to journal › Article › peer-review

Open Access
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36 Citations (Scopus)

146 Downloads (Pure)
m⁶A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5' splice site
Parker, M. T., Soanes, B. K., Kusakina, J., Larrieu, A., Knop, K., Joy, N., Breidenbach, F., Sherwood, A. V., Barton, G. J., Fica, S. M., Davies, B. H. (Lead / Corresponding author) & Simpson, G. G. (Lead / Corresponding author), 30 Dec 2022, In: eLife. 11, 34 p., e78808.
Research output: Contribution to journal › Article › peer-review

Open Access
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20 Citations (Scopus)

107 Downloads (Pure)
2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing
Parker, M. T. (Lead / Corresponding author), Knop, K., Barton, G. J. & Simpson, G. G. (Lead / Corresponding author), 1 Mar 2021, In: Genome Biology. 22, 1, 24 p., 72.
Research output: Contribution to journal › Article › peer-review

Open Access
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12 Citations (Scopus)

230 Downloads (Pure)
Chromosome evolution and the genetic basis of agronomically important traits in greater yam
Bredeson, J. V., Lyon, J. B., Oniyinde, I. O., Okereke, N. R., Kolade, O., Nnabue, I., Nwadili, C. O., Hřibová, E., Parker, M., Nwogha, J., Shu, S., Carlson, J., Kariba, R., Muthemba, S., Knop, K., Barton, G. J., Sherwood, A. V., Lopez-Montes, A., Asiedu, R. & Jamnadass, R. & 11 others, Goodstein, D., Egesi, C. N., Featherston, J., Simpson, G., Doležel, J., Hendre, P. S., Van Deynze, A., Kumar, P. L., Obidiegwu, J. E. (Lead / Corresponding author), Bhattacharjee, R. (Lead / Corresponding author) & Rokhsar, D. S. (Lead / Corresponding author), 15 Apr 2021, Cold Spring Harbor Laboratory: BioRxiv, p. 1-36, 36 p.
Research output: Working paper/Preprint › Preprint

Nanopore direct RNA sequencing of Col-0 and fio1-3 mutant Arabidopsis
Parker, M. (Creator), Soanes, B. K. (Creator), Kusakina, J. (Creator), Larrieu, A. (Creator), Knop, K. (Creator), Joy, N. (Creator), Breidenbach, F. (Creator), Sherwood, A. (Creator), Barton, G. (Creator), Fica, S. M. (Creator), Davies, B. H. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 5 Apr 2022
https://www.ebi.ac.uk/ena/browser/view/PRJEB51364
Dataset
Nanopore Direct RNA Sequencing Maps the Arabidopsis m6A Epitranscriptome
Parker, M. (Creator), Knop, K. (Creator), Sherwood, A. (Creator), Schurch, N. (Creator), Mackinnon, K. (Creator), Gould, P. (Creator), Hall, A. (Creator), Barton, G. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 28 May 2019
https://www.ebi.ac.uk/ena/data/view/PRJEB32782
Dataset
Nanopore direct RNA sequencing of the Arabidopsis RNA exosome mutant hen2-2
Parker, M. (Creator), Knop, K. (Creator), Barton, G. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 16 Dec 2020
https://www.ebi.ac.uk/ena/browser/view/PRJEB41381
Dataset
Proteomic analysis of FPA interactors
Parker, M. (Creator), Knop, K. (Creator), Zacharaki, V. (Creator), Sherwood, A. (Creator), Tome, D. (Creator), Yu, X. (Creator), Martin, P. (Creator), Beynon, J. (Creator), Michaels, S. (Creator), Barton, G. (Creator) & Simpson, G. (Creator), PRoteomics IDEntifications Database, 16 Dec 2020
https://www.ebi.ac.uk/pride/archive/projects/PXD022684
Dataset
Illumina RNA-Seq of FPA mutants and overexpressors.
Parker, M. (Creator), Knop, K. (Creator), Zacharaki, V. (Creator), Sherwood, A. (Creator), Tome, D. (Creator), Yu, X. (Creator), Martin, P. (Creator), Beynon, J. (Creator), Michaels, S. (Creator), Barton, G. (Creator) & Simpson, G. (Creator), European Nucleotide Archive, 20 Nov 2020
https://www.ebi.ac.uk/ena/browser/view/PRJEB41455
Dataset

Knop, Katarzyna

Fingerprint

Collaborations and top research areas from the last five years

Dive into details

RAM is upregulated during T cell activation and is required for RNA cap formation and gene expression

Chromosome evolution and the genetic basis of agronomically important traits in greater yam

m⁶A modification of U6 snRNA modulates usage of two major classes of pre-mRNA 5' splice site

2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing

Chromosome evolution and the genetic basis of agronomically important traits in greater yam

Nanopore direct RNA sequencing of Col-0 and fio1-3 mutant Arabidopsis

Nanopore Direct RNA Sequencing Maps the Arabidopsis m6A Epitranscriptome

Nanopore direct RNA sequencing of the Arabidopsis RNA exosome mutant hen2-2

Proteomic analysis of FPA interactors

Illumina RNA-Seq of FPA mutants and overexpressors.

Knop, Katarzyna

Fingerprint

Collaborations and top research areas from the last five years

Research output

Datasets