• 707 Citations
  • 11 h-Index
20042022
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Research Output 2004 2019

2019
1 Citation (Scopus)
39 Downloads (Pure)

Aggregation of nontuberculous mycobacteria is regulated by carbon-nitrogen balance

Depas, W. H., Bergkessel, M. & Newman, D. K., Aug 2019, In : MBio. 10, 4, p. 1-17 17 p., e01715-19.

Research output: Contribution to journalArticle

Open Access
File
Nontuberculous Mycobacteria
Nitrogen
Carbon
Biofilms
Mycobacterium smegmatis

Nontuberculous Mycobacterial Aggregation is Regulated by C:N Balance

DePas, W., Bergkessel, M. & Newman, D. K., Oct 2019, In : Pediatric Pulmonology. 54, S2, p. S310 1 p., 411.

Research output: Contribution to journalConference article

Nontuberculous Mycobacteria
Zebrafish
Mycobacterium
Phagocytes
Biofilms

The dormancy-specific regulator, SutA, is intrinsically disordered and modulates transcription initiation in Pseudomonas aeruginosa

Bergkessel, M., Babin, B. M., VanderVelde, D., Sweredoski, M. J., Moradian, A., Eggleston-Rangel, R., Hess, S., Tirrell, D. A., Artsimovitch, I. & Newman, D. K., 10 Sep 2019, In : Molecular Microbiology. 112, 3, p. 992-1009 18 p.

Research output: Contribution to journalArticle

DNA-Directed RNA Polymerases
Pseudomonas aeruginosa
Sigma Factor
Holoenzymes
Housekeeping
2018
31 Downloads (Pure)

Erratum for Basta et al., "Identification of Fitness Determinants during Energy-Limited Growth Arrest in Pseudomonas aeruginosa"

Basta, D. W., Bergkessel, M. & Newman, D. K., 10 Apr 2018, In : MBio. 9, 2, 1 p., e00576-18.

Research output: Contribution to journalComment/debate

Open Access
File
2017

Aggregation of Nontuberculous Mycobacteria in Vitro and in Situ

DePas, W., Bergkessel, M. & Newman, D. K., Sep 2017, In : Pediatric Pulmonology. 52, S47, p. S342 1 p., 336.

Research output: Contribution to journalConference article

Nontuberculous Mycobacteria
Mycobacterium smegmatis
Cystic Fibrosis
Glycerol
Infection
7 Citations (Scopus)
32 Downloads (Pure)

Identification of Fitness Determinants during Energy-Limited Growth Arrest in Pseudomonas aeruginosa

Basta, D. W., Bergkessel, M. & Newman, D. K., Dec 2017, In : MBio. 8, 6, p. 1-18 18 p., e01170-17.

Research output: Contribution to journalArticle

Open Access
File
Pseudomonas aeruginosa
Oxygen
Growth
Genes
Carbon

SutA is a Global Transcriptional Regulator Operating during Slow Growth in Pseudomonas Aeruginosa

Bergkessel, M., Newman, D. K., Babin, B. & Tirrell, D. A., Sep 2017, In : Pediatric Pulmonology. 52, S47, p. S366-S367 2 p., 397.

Research output: Contribution to journalConference article

Pseudomonas aeruginosa
DNA-Directed RNA Polymerases
Growth
Genes
Pseudomonas Infections
2016
12 Citations (Scopus)

Evolutionarily conserved polyadenosine RNA binding protein Nab2 cooperates with splicing machinery to regulate the fate of pre-mRNA

Soucek, S., Zeng, Y., Bellur, D. L., Bergkessel, M., Morris, K. J., Deng, Q., Duong, D., Seyfried, N. T., Guthrie, C., Staley, J. P., Fasken, M. B. & Corbett, A. H., Nov 2016, In : Molecular and Cellular Biology. 36, 21, p. 2697-2714 18 p.

Research output: Contribution to journalArticle

RNA-Binding Proteins
RNA Precursors
Messenger RNA
Spliceosomes
Exosome Multienzyme Ribonuclease Complex
18 Citations (Scopus)

SutA is a bacterial transcription factor expressed during slow growth in Pseudomonas aeruginosa

Babin, B. M., Bergkessel, M., Sweredoski, M. J., Moradian, A., Hess, S., Newman, D. K. & Tirrell, D. A., 2 Feb 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 5, p. E597-E605 9 p.

Research output: Contribution to journalArticle

Pseudomonas aeruginosa
Transcription Factors
Growth
Chromatin Immunoprecipitation
Proteins
46 Citations (Scopus)

The physiology of growth arrest: Uniting molecular and environmental microbiology

Bergkessel, M., Basta, D. W. & Newman, D. K., Sep 2016, In : Nature Reviews Microbiology. 14, 9, p. 549-562 14 p.

Research output: Contribution to journalReview article

Environmental Microbiology
Bacterial Physiological Phenomena
Growth
Electrons
Bacteria
2015
18 Citations (Scopus)

Enzymatic degradation of phenazines can generate energy and protect sensitive organisms from toxicity

Costa, K. C., Bergkessel, M., Saunders, S., Korlach, J. & Newman, D. K., Dec 2015, In : MBio. 6, 6, p. 1-10 10 p., e01520-15.

Research output: Contribution to journalArticle

Open Access
File
Phenazines
Pyocyanine
Pseudomonas
Pregnenolone Carbonitrile
Rhizosphere
2014

Selective proteomics in bacterial dormancy: Enrichment of proteins synthesized by pseudomonas aeruginosa reveals a novel regulator

Babin, B. M., Bergkessel, M., Newman, D. K. & Tirrell, D. A., 2014, Food, Pharmaceutical and Bioengineering Division 2014 - Core Programming Area at the 2014 AIChE Annual Meeting. AIChE, Vol. 1. p. 116 1 p. 387795

Research output: Chapter in Book/Report/Conference proceedingConference contribution

49 Citations (Scopus)

The upper respiratory tract as a microbial source for pulmonary infections in cystic fibrosis: Parallels from island biogeography

Whiteson, K. L., Bailey, B., Bergkessel, M., Conrad, D., Delhaes, L., Felts, B., Harris, J. K., Hunter, R., Lim, Y. W., Maughan, H., Quinn, R., Salamon, P., Sullivan, J., Wagner, B. D. & Rainey, P. B., 1 Jun 2014, In : American Journal of Respiratory and Critical Care Medicine. 189, 11, p. 1309-1315 7 p.

Research output: Contribution to journalArticle

Islands
Cystic Fibrosis
Respiratory System
Lung
Infection
2013
4 Citations (Scopus)

Chemical Transformation of Yeast

Bergkessel, M. & Guthrie, C., 2013, Laboratory Methods in Enzymology: DNA. Lorsch, J. (ed.). Academic Press Inc., Vol. 529. p. 311-320 10 p. (Methods in Enzymology; vol. 529).

Research output: Chapter in Book/Report/Conference proceedingChapter

Yeast
Yeasts
DNA
Cells
DNA Replication
19 Citations (Scopus)

Colony PCR

Bergkessel, M. & Guthrie, C., 2013, Laboratory Methods in Enzymology: DNA. Lorsch, J. (ed.). Academic Press Inc., Vol. 529. p. 299-309 11 p. (Methods in Enzymology; vol. 529).

Research output: Chapter in Book/Report/Conference proceedingChapter

Yeast
Bacteria
Screening
Yeasts
Polymerase Chain Reaction

Yeast-gene replacement using PCR products

Bergkessel, M., Guthrie, C. & Abelson, J., 2013, Laboratory Methods in Enzymology: Cell, Lipid and Carbohydrate. Lorsch, J. (ed.). Academic Press Inc., Vol. 533. p. 43-55 13 p. (Methods in Enzymology; vol. 533).

Research output: Chapter in Book/Report/Conference proceedingChapter

Yeast
Genes
Yeasts
Polymerase Chain Reaction
Genome
2011
37 Citations (Scopus)

Diverse environmental stresses elicit distinct responses at the level of pre-mRNA processing in yeast

Bergkessel, M., Whitworth, G. B. & Guthrie, C., Aug 2011, In : RNA. 17, 8, p. 1461-1478 18 p.

Research output: Contribution to journalArticle

RNA Precursors
Introns
Yeasts
Casein Kinase II
Messenger RNA
2009
1 Citation (Scopus)

SnapShot: Formation of mRNPs

Bergkessel, M., Wilmes, G. M. & Guthrie, C., 20 Feb 2009, In : Cell. 136, 4, p. 794-794.e1 2 p.

Research output: Contribution to journalShort survey

2008
181 Citations (Scopus)

A Genetic Interaction Map of RNA-Processing Factors Reveals Links between Sem1/Dss1-Containing Complexes and mRNA Export and Splicing

Wilmes, G. M., Bergkessel, M., Bandyopadhyay, S., Shales, M., Braberg, H., Cagney, G., Collins, S. R., Whitworth, G. B., Kress, T. L., Weissman, J. S., Ideker, T., Guthrie, C. & Krogan, N. J., 5 Dec 2008, In : Molecular Cell. 32, 5, p. 735-746 12 p.

Research output: Contribution to journalArticle

Proteasome Endopeptidase Complex
RNA
Messenger RNA
Essential Genes
RNA Precursors
2007
144 Citations (Scopus)

Rapid, Transcript-Specific Changes in Splicing in Response to Environmental Stress

Pleiss, J. A., Whitworth, G. B., Bergkessel, M. & Guthrie, C., 21 Sep 2007, In : Molecular Cell. 27, 6, p. 928-937 10 p.

Research output: Contribution to journalArticle

Ribosomal Proteins
Introns
Genes
Saccharomycetales
Poisons
144 Citations (Scopus)
29 Downloads (Pure)

Transcript specificity in yeast pre-mRNA splicing revealed by mutations in core spliceosomal components

Pleiss, J. A., Whitworth, G. B., Bergkessel, M. & Guthrie, C., 27 Mar 2007, In : PLoS Biology. 5, 4, p. 745-757 13 p.

Research output: Contribution to journalArticle

Open Access
File
spliceosomes
RNA splicing
Spliceosomes
RNA Splicing
messenger RNA
2004
26 Citations (Scopus)

An essential role for the Saccharomyces cerevisiae DEAD-box helicase DHH1 in G1/S DNA-damage checkpoint recovery

Bergkessel, M. & Reese, J. C., 1 May 2004, In : Genetics. 167, 1, p. 21-33 13 p.

Research output: Contribution to journalArticle

DNA Damage
G1 Phase Cell Cycle Checkpoints
Saccharomyces cerevisiae
Cell Cycle
DEAD-box RNA Helicases