Rastko Sknepnek

2022

Linear viscoelastic properties of the vertex model for epithelial tissues

Tong, S., Singh, N. K., Sknepnek, R. & Košmrlj, A., 27 Jan 2022, (E-pub ahead of print) arXiv, 36 p.

Research output: Working paper/Preprint › Preprint

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Linear viscoelastic properties of the vertex model for epithelial tissues

Tong, S., Singh, N. K., Sknepnek, R. & Košmrlj, A., 19 May 2022, In: PLoS Computational Biology. 18, 5, 24 p., e1010135.

Research output: Contribution to journal › Article › peer-review

Open Access

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5 Citations (Scopus)

10 Downloads (Pure)

Linear viscoelastic response of the vertex model with internal and external dissipation: Normal modes analysis

Tong, S., Sknepnek, R. & Košmrlj, A., 2 Oct 2022, Cornell University: arXiv, 21 p.

Research output: Working paper/Preprint › Preprint

Open Access

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1 Downloads (Pure)

Shape-tension coupling produces nematic order in an epithelium vertex model

Rozamn, J., Sknepnek, R. & Yeomans, J. M., 21 Dec 2022, arXiv, 7 p.

Research output: Working paper/Preprint › Preprint

2021

Coordinated tractions increase the size of a collectively moving pack in a cell monolayer

Saraswathibhatla, A., Henkes, S., Galles, E. E., Sknepnek, R. & Notbohm, J., Oct 2021, In: Extreme Mechanics Letters. 48, 6 p., 101438.

Research output: Contribution to journal › Article › peer-review

Open Access

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4 Citations (Scopus)

16 Downloads (Pure)

Generating active T1 transitions through mechanochemical feedback

Sknepnek, R., Henkes, S., Djafer-Cherif, I. & Weijer, K., 23 Jun 2021, arXiv, 16 p.

Research output: Working paper/Preprint › Preprint

2020

Dense active matter model of motion patterns in confluent cell monolayers

Henkes, S., Kostanjevec, K., Collinson, J. M., Sknepnek, R. & Bertin, E., 16 Mar 2020, In: Nature Communications. 11, 9 p., 1405.

Research output: Contribution to journal › Article › peer-review

Open Access

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45 Citations (Scopus)

47 Downloads (Pure)

Stratification relieves constraints from steric hindrance in the generation of compact acto-myosin asters at the membrane cortex

Das, A., Bhat, A., Sknepnek, R., Koster, D., Mayor, S. & Rao, M., 11 Mar 2020, In: Science Advances. 6, 11, 9 p., eaay6093.

Research output: Contribution to journal › Article › peer-review

Open Access

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9 Citations (Scopus)

44 Downloads (Pure)

Wrinkle patterns in active viscoelastic thin sheets

Matoz-Fernandez, D., Davidson, F., Stanley-Wall, N. & Sknepnek, R., 18 Feb 2020, In: Physical Review Research. 2, p. 1-13 13 p., 013165.

Research output: Contribution to journal › Article › peer-review

Open Access

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10 Citations (Scopus)

52 Downloads (Pure)

2019

Confinement-Induced Transition between Wavelike Collective Cell Migration Modes

Petrolli, V., Le Goff, M., Tadrous, M., Martens, K., Allier, C., Mandula, O., Hervé, L., Henkes, S., Sknepnek, R., Boudou, T., Cappello, G. & Balland, M., 26 Apr 2019, In: Physical Review Letters. 122, 16, 5 p., 168101.

Research output: Contribution to journal › Article › peer-review

Open Access

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28 Citations (Scopus)

165 Downloads (Pure)

2018

Dynamically generated patterns in dense suspensions of active filaments

Kokkoorakunnel Ramankutty, P., Henkes, S. & Sknepnek, R., 12 Feb 2018, In: Physical Review E: Statistical, nonlinear, and soft matter physics. 97, 2, 022606.

Research output: Contribution to journal › Article › peer-review

Open Access

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34 Citations (Scopus)

162 Downloads (Pure)

Dynamical patterns in nematic active matter on a sphere

Henkes, S., Marchetti, M. C. & Sknepnek, R., 16 Apr 2018, In: Physical Review A. 97, 4, 12 p., 042605.

Research output: Contribution to journal › Article › peer-review

Open Access

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33 Citations (Scopus)

158 Downloads (Pure)

2017

Active Vertex Model for Cell-Resolution Description of Epithelial Tissue Mechanics

Barton, D. L., Henkes, S., Weijer, C. J. & Sknepnek, R., 30 Jun 2017, In: PLoS Computational Biology. 13, 6, 34 p., e1005569.

Research output: Contribution to journal › Article › peer-review

Open Access

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116 Citations (Scopus)

251 Downloads (Pure)

Cell division and death inhibit glassy behaviour of confluent tissues

Matoz-Fernandez, D. A., Martens, K., Sknepnek, R., Barrat, J. L. & Henkes, S., 7 May 2017, In: Soft Matter. 17, 13, p. 3205-3212 7 p.

Research output: Contribution to journal › Article › peer-review

Open Access

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28 Citations (Scopus)

161 Downloads (Pure)

Non-Hookean statistical mechanics of clamped graphene ribbons

Bowick, M. J., Košmrlj, A., Nelson, D. R. & Sknepnek, R., 22 Mar 2017, In: Physical Review B: Condensed matter and materials physics. 95, 10, p. 1-7 7 p., 104109.

Research output: Contribution to journal › Article › peer-review

Open Access

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27 Citations (Scopus)

160 Downloads (Pure)

Stiffening thermal membranes by cutting

Russell, E. R., Sknepnek, R. & Bowick, M. J., 10 Jul 2017, In: Physical Review A. 96, 1, 013002.

Research output: Contribution to journal › Article › peer-review

Open Access

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4 Citations (Scopus)

181 Downloads (Pure)

2015

Active swarms on a sphere

Sknepnek, R. & Henkes, S., 17 Feb 2015, In: Physical Review E: Statistical, nonlinear, and soft matter physics. 91, 2, 5 p., 022306.

Research output: Contribution to journal › Article › peer-review

Open Access

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53 Citations (Scopus)

292 Downloads (Pure)

Effects of scars on icosahedral crystalline shell stability under external pressure

Wan, D., Bowick, M. J. & Sknepnek, R., Mar 2015, In: Physical Review E: Statistical, nonlinear, and soft matter physics. 91, 3, 033205.

Research output: Contribution to journal › Article › peer-review

8 Citations (Scopus)

On the modeling of endocytosis in yeast

Zhang, T., Sknepnek, R., Bowick, M. J. & Schwarz, J. M., 3 Feb 2015, In: Biophysical Journal. 108, 3, p. 508-519 12 p.

Research output: Contribution to journal › Article › peer-review

17 Citations (Scopus)

2014

Defect dynamics in active nematics

Giomi, L., Bowick, M. J., Mishra, P., Sknepnek, R. & Marchetti, M. C., 28 Nov 2014, In: Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 372, 2029, 16 p.

Research output: Contribution to journal › Article › peer-review

136 Citations (Scopus)

Optimal shapes and stresses of adherent cells on patterned substrates

Banerjee, S., Sknepnek, R. & Marchetti, M. C., 14 Apr 2014, In: Soft Matter. 10, 14, p. 2424-2430 7 p.

Research output: Contribution to journal › Article › peer-review

10 Citations (Scopus)

2013

Mechanical model of blebbing in nuclear lamin meshworks

Funkhouser, C. M., Sknepnek, R., Shimi, T., Goldman, A. E., Goldman, R. D. & de la Cruz, M. O., 26 Feb 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 9, p. 3248-3253 6 p.

Research output: Contribution to journal › Article › peer-review

66 Citations (Scopus)

Pathways to faceting of vesicles

Bowick, M. J. & Sknepnek, R., 14 Sept 2013, In: Soft Matter. 9, 34, p. 8088-8095 8 p.

Research output: Contribution to journal › Article › peer-review

24 Citations (Scopus)

Planar sheets meet negative-curvature liquid interfaces

Yao, Z., Bowick, M., Ma, X. & Sknepnek, R., Feb 2013, In: European Physical Society letters (EPL). 101, 4, 5 p., 44007.

Research output: Contribution to journal › Article › peer-review

8 Citations (Scopus)

Thermally active hybridization drives the crystallization of DNA-functionalized nanoparticles

Li, T. I. N. G., Sknepnek, R. & de la Cruz, M. O., 12 Jun 2013, In: Journal of the American Chemical Society. 135, 23, p. 8535-8541 7 p.

Research output: Contribution to journal › Article › peer-review

54 Citations (Scopus)

Topological defects in the buckling of elastic membranes

Funkhouser, C. M., Sknepnek, R. & de la Cruz, M. O., 2013, In: Soft Matter. 9, 1, p. 60-68 9 p.

Research output: Contribution to journal › Article › peer-review

18 Citations (Scopus)

2012

Buckling of multicomponent elastic shells with line tension

Sknepnek, R., Vernizzi, G. & de la Cruz, M. O., 2012, In: Soft Matter. 8, 3, p. 636-644 9 p.

Research output: Contribution to journal › Article › peer-review

35 Citations (Scopus)

Charge renormalization of bilayer elastic properties

Sknepnek, R., Vernizzi, G. & de la Cruz, M. O., 14 Sept 2012, In: Journal of Chemical Physics. 137, 10, 9 p., ARTN 104905.

Research output: Contribution to journal › Article › peer-review

1 Citation (Scopus)

Curvature-driven effective attraction in multicomponent membranes

Demers, M. F., Sknepnek, R. & de la Cruz, M. O., 15 Aug 2012, In: Physical Review E: Statistical, nonlinear, and soft matter physics. 86, 2, 6 p., ARTN 021504.

Research output: Contribution to journal › Article › peer-review

6 Citations (Scopus)

Modeling the crystallization of spherical nucleic acid nanoparticle conjugates with molecular dynamics simulations

Li, T. I. N. G., Sknepnek, R., Macfarlane, R. J., Mirkin, C. A. & de la Cruz, M. O., May 2012, In: Nano Letters. 12, 5, p. 2509-2514 6 p.

Research output: Contribution to journal › Article › peer-review

111 Citations (Scopus)

Molecular crystallization controlled by pH regulates mesoscopic membrane morphology

Leung, C-Y., Palmer, L. C., Qiao, B. F., Kewalramani, S., Sknepnek, R., Newcomb, C. J., Greenfield, M. A., Vernizzi, G., Stupp, S. I., Bedzyk, M. J. & de la Cruz, M. O., Dec 2012, In: ACS Nano. 6, 12, p. 10901-10909 9 p.

Research output: Contribution to journal › Article › peer-review

51 Citations (Scopus)

Nonlinear elastic model for faceting of vesicles with soft grain boundaries

Sknepnek, R. & de la Cruz, M. O., 22 May 2012, In: Physical Review E: Statistical, nonlinear, and soft matter physics. 85, 5, 4 p., ARTN 050501.

Research output: Contribution to journal › Article › peer-review

15 Citations (Scopus)

Shapes of pored membranes

Yao, Z., Sknepnek, R., Thomas, C. K. & de la Cruz, M. O., 2012, In: Soft Matter. 8, 46, p. 11613-11619 7 p.

Research output: Contribution to journal › Article › peer-review

10 Citations (Scopus)

2011

Crystallization induced by electrostatic correlations in vesicles of mixed-valence ionic amphiphiles

Leung, C. Y., Palmer, L. C., Sknepnek, R., Vernizzi, G., Greenfield, M. A., Stupp, S. I., Bedzyk, M. J. & de la Cruz, M. O., 27 Mar 2011, In: Abstracts of Papers of the American Chemical Society. 241, 1 p.

Research output: Contribution to journal › Meeting abstract › peer-review

Electrostatic-driven ridge formation on nanoparticles coated with charged end-group ligands

Guo, P., Sknepnek, R. & de la Cruz, M. O., 14 Apr 2011, In: Journal of Physical Chemistry C. 115, 14, p. 6484-6490 7 p.

Research output: Contribution to journal › Article › peer-review

29 Citations (Scopus)

Platonic and Archimedean geometries in multicomponent elastic membranes

Vernizzi, G., Sknepnek, R. & de la Cruz, M. O., 15 Mar 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 11, p. 4292-4296 5 p.

Research output: Contribution to journal › Article › peer-review

73 Citations (Scopus)

Shape change of nanocontainers via a reversible ionic buckling

Sknepnek, R., Vernizzi, G. & de la Cruz, M. O., 25 May 2011, In: Physical Review Letters. 106, 21, 4 p., ARTN 215504.

Research output: Contribution to journal › Article › peer-review

9 Citations (Scopus)

2010

A graphics processing unit implementation of Coulomb interaction in molecular dynamics

Jha, P. K., Sknepnek, R., Guerrero-Garcia, G. I. & de la Cruz, M. O., Oct 2010, In: Journal of Chemical Theory and Computation. 6, 10, p. 3058-3065 8 p.

Research output: Contribution to journal › Article › peer-review

37 Citations (Scopus)

A quantitative description of the binding equilibria of para-substituted aniline ligands and CdSe quantum dots

Donakowski, M. D., Godbe, J. M., Sknepnek, R., Knowles, K. E., de la Cruz, M. O. & Weiss, E. A., Dec 2010, In: Journal of Physical Chemistry C. 114, 51, p. 22526-22534 9 p.

Research output: Contribution to journal › Article › peer-review

Design of polymer nanocomposites in solution by polymer functionalization

Anderson, J. A., Sknepnek, R. & Travesset, A., 13 Aug 2010, In: Physical Review E: Statistical, nonlinear, and soft matter physics. 82, 2, 11 p., ARTN 021803.

Research output: Contribution to journal › Article › peer-review

20 Citations (Scopus)

Spectral analysis for the iron-based superconductors: Anisotropic spin fluctuations and fully gapped s(+/-)-wave superconductivity

Zhang, J., Sknepnek, R. & Schmalian, J., 20 Oct 2010, In: Physical Review B: Condensed matter and materials physics. 82, 13, 9 p., ARTN 134527.

Research output: Contribution to journal › Article › peer-review

25 Citations (Scopus)

2009

Anisotropy of the pairing gap of FeAs-based superconductors induced by spin fluctuations

Sknepnek, R., Samolyuk, G., Lee, Y. & Schmalian, J., Feb 2009, In: Physical Review B: Condensed matter and materials physics. 79, 5, 9 p., ARTN 054511.

Research output: Contribution to journal › Article › peer-review

42 Citations (Scopus)

Design rules for polymer nanocomposite materials from solutions

Travesset, A., Anderson, J. & Sknepnek, R., 16 Aug 2009, In: Abstracts of Papers of the American Chemical Society. 238, 1 p.

Research output: Contribution to journal › Meeting abstract › peer-review

Orbital coupling and superconductivity in the iron pnictides

Zhang, J., Sknepnek, R., Fernandes, R. M. & Schmalian, J., Jun 2009, In: Physical Review B: Condensed matter and materials physics. 79, 22, 4 p., ARTN 220502.

Research output: Contribution to journal › Article › peer-review

62 Citations (Scopus)

2008

Nanoparticle ordering via functionalized block copolymers in solution

Sknepnek, R., Anderson, J. A., Lamm, M. H., Schmalian, J. & Travesset, A., Jun 2008, In: ACS Nano. 2, 6, p. 1259-1265 7 p.

Research output: Contribution to journal › Article › peer-review

44 Citations (Scopus)

Ordering of nanoparticles mediated by end-functionalized triblock copolymers

Sknepnek, R., Anderson, J. A., Lamm, M. H., Schmalian, J. & Travesset, A., 1 Dec 2008, AIChE100 - 2008 AIChE Annual Meeting, Conference Proceedings. (AIChE Annual Meeting, Conference Proceedings).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Universality of liquid-gas Mott transitions at finite temperatures

Papanikolaou, S., Fernandes, R. M., Fradkin, E., Phillips, P. W., Schmalian, J. & Sknepnek, R., 18 Jan 2008, In: Physical Review Letters. 100, 2, 4 p., ARTN 026408.

Research output: Contribution to journal › Article › peer-review