Research output per year
Research output per year
- 1 - 50 out of 69 results
Search results
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2025
Cell-Level Modelling of Homeostasis in Confined Epithelial Monolayers
Kanala Venkata, S. C., Sknepnek, R. (Lead / Corresponding author), Rozman, J. & Košmrlj, A., 24 Feb 2025, In: Journal of Elasticity. 157, 2, 21 p., 29.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)9 Downloads (Pure) -
Quantifying the shape of cells - from Minkowski tensors to p-atic order
Happel, L. (Lead / Corresponding author), Oberschelp, G., Grudtsyana, V., Sknepnek, R., Doostmohammadi, A. & Voigt, A. (Lead / Corresponding author), 3 Jan 2025, BioRxiv, 36 p.Research output: Working paper/Preprint › Preprint
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2024
An active matter model captures the spatial dynamics of actomyosin oscillations during morphogenesis
Mackay, E. (Lead / Corresponding author), Bebbington, A. (Lead / Corresponding author), Januschke, J., Kursawe, J. (Lead / Corresponding author), Bischoff, M. (Lead / Corresponding author) & Sknepnek, R. (Lead / Corresponding author), 5 Oct 2024, BioRxiv, 33 p.Research output: Working paper/Preprint › Preprint
File4 Downloads (Pure) -
Cell-level modelling of active forces in early-stage development
Sknepnek, R. (Lead / Corresponding author), Weijer, C. J., Henkes, S. E., Rozman, J., Kanala Venkata, S. C., Yeomans, J. & Kosmrlj, A., 4 Mar 2024, In: Bulletin of the American Physical Society. D24.00003.Research output: Contribution to journal › Meeting abstract › peer-review
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Cell-level modelling of homeostasis in confined epithelial monolayers
Kanala Venkata, S. C. (Lead / Corresponding author), Rozman, J., Košmrlj, A. & Sknepnek, R. (Lead / Corresponding author), 23 Mar 2024, arXiv, 18 p.Research output: Working paper/Preprint › Preprint
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Computers and Biological Research
Barton, G. (Contributing member), Cameron, A. (Producer), Soave, S. (Film-maker), Sknepnek, R. (Contributing member), Schweikert, G. (Contributing member), Zachariae, U. (Contributing member) & Duce, S. (Contributing member), 2024Research output: Non-textual form › Digital or Visual Products
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Spiral-eyes: A soft active matter model of in vivo corneal epithelial cell migration
Kostanjevec, K., Sknepnek, R., Collinson, J. M. (Lead / Corresponding author) & Henkes, S. (Lead / Corresponding author), 18 Aug 2024, BioRxiv, 32 p.Research output: Working paper/Preprint › Preprint
File11 Downloads (Pure) -
2023
From Dry to Wet Vertex Model Dynamics: Generating Sustained Flows
Rozman, J., Kanala Venkata, S. C., Yeomans, J. & Sknepnek, R., 18 Dec 2023, arXiv, 11 p.Research output: Working paper/Preprint › Preprint
File58 Downloads (Pure) -
Generating active T1 transitions through mechanochemical feedback
Sknepnek, R. (Lead / Corresponding author), Djafer-Cherif, I., Chuai, M., Weijer, C. (Lead / Corresponding author) & Henkes, S. (Lead / Corresponding author), 4 May 2023, In: eLife. 12, 27 p., e79862.Research output: Contribution to journal › Article › peer-review
Open AccessFile22 Citations (Scopus)141 Downloads (Pure) -
Linear viscoelastic response of the vertex model with internal and external dissipation: Normal modes analysis
Tong, S., Sknepnek, R. (Lead / Corresponding author) & Košmrlj, A. (Lead / Corresponding author), 24 Feb 2023, In: Physical Review Research. 5, p. 1-20 20 p., 013143.Research output: Contribution to journal › Article › peer-review
Open AccessFile6 Citations (Scopus)103 Downloads (Pure) -
PyMembrane: A flexible framework for efficient simulations of elastic and liquid membranes
Matoz-Fernandez, D. (Lead / Corresponding author), Li, S., Olvera de la Cruz, M. & Sknepnek, R. (Lead / Corresponding author), 24 Aug 2023, arXiv, 15 p.Research output: Working paper/Preprint › Preprint
Open AccessFile15 Downloads (Pure) -
Shape-Tension Coupling Produces Nematic Order in an Epithelium Vertex Model
Rozman, J., Yeomans, J. M. & Sknepnek, R., 1 Dec 2023, In: Physical Review Letters. 131, 22, 6 p., 228301.Research output: Contribution to journal › Article › peer-review
Open AccessFile10 Citations (Scopus)94 Downloads (Pure) -
Tutorial on Vertex Model
Sknepnek, R., 19 Dec 2023.Research output: Contribution to conference › Other
Open Access -
2022
Linear viscoelastic properties of the vertex model for epithelial tissues
Tong, S., Singh, N. K., Sknepnek, R. & Košmrlj, A., 27 Jan 2022, (E-pub ahead of print) arXiv, 36 p.Research output: Working paper/Preprint › Preprint
File88 Downloads (Pure) -
Linear viscoelastic properties of the vertex model for epithelial tissues
Tong, S., Singh, N. K., Sknepnek, R. (Lead / Corresponding author) & Košmrlj, A. (Lead / Corresponding author), 19 May 2022, In: PLoS Computational Biology. 18, 5, 24 p., e1010135.Research output: Contribution to journal › Article › peer-review
Open AccessFile27 Citations (Scopus)122 Downloads (Pure) -
Linear viscoelastic response of the vertex model with internal and external dissipation: Normal modes analysis
Tong, S., Sknepnek, R. (Lead / Corresponding author) & Košmrlj, A. (Lead / Corresponding author), 2 Oct 2022, Cornell University: arXiv, 21 p.Research output: Working paper/Preprint › Preprint
Open AccessFile40 Downloads (Pure) -
Shape-tension coupling produces nematic order in an epithelium vertex model
Rozamn, J. (Lead / Corresponding author), Sknepnek, R. & Yeomans, J. M., 21 Dec 2022, arXiv, 7 p.Research output: Working paper/Preprint › Preprint
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2021
Coordinated tractions increase the size of a collectively moving pack in a cell monolayer
Saraswathibhatla, A., Henkes, S., Galles, E. E., Sknepnek, R. & Notbohm, J. (Lead / Corresponding author), Oct 2021, In: Extreme Mechanics Letters. 48, 6 p., 101438.Research output: Contribution to journal › Article › peer-review
Open AccessFile15 Citations (Scopus)130 Downloads (Pure) -
Generating active T1 transitions through mechanochemical feedback
Sknepnek, R. (Lead / Corresponding author), Henkes, S., Djafer-Cherif, I. & Weijer, K., 23 Jun 2021, arXiv, 16 p.Research output: Working paper/Preprint › Preprint
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2020
Dense active matter model of motion patterns in confluent cell monolayers
Henkes, S. (Lead / Corresponding author), Kostanjevec, K., Collinson, J. M., Sknepnek, R. (Lead / Corresponding author) & Bertin, E. (Lead / Corresponding author), 16 Mar 2020, In: Nature Communications. 11, 9 p., 1405.Research output: Contribution to journal › Article › peer-review
Open AccessFile109 Citations (Scopus)126 Downloads (Pure) -
Stratification relieves constraints from steric hindrance in the generation of compact acto-myosin asters at the membrane cortex
Das, A., Bhat, A., Sknepnek, R., Koster, D., Mayor, S. (Lead / Corresponding author) & Rao, M. (Lead / Corresponding author), 11 Mar 2020, In: Science Advances. 6, 11, 9 p., eaay6093.Research output: Contribution to journal › Article › peer-review
Open AccessFile16 Citations (Scopus)83 Downloads (Pure) -
Wrinkle patterns in active viscoelastic thin sheets
Matoz-Fernandez, D., Davidson, F., Stanley-Wall, N. & Sknepnek, R. (Lead / Corresponding author), 18 Feb 2020, In: Physical Review Research. 2, p. 1-13 13 p., 013165.Research output: Contribution to journal › Article › peer-review
Open AccessFile16 Citations (Scopus)107 Downloads (Pure) -
2019
Confinement-Induced Transition between Wavelike Collective Cell Migration Modes
Petrolli, V., Le Goff, M., Tadrous, M., Martens, K., Allier, C., Mandula, O., Hervé, L., Henkes, S., Sknepnek, R., Boudou, T., Cappello, G. (Lead / Corresponding author) & Balland, M. (Lead / Corresponding author), 26 Apr 2019, In: Physical Review Letters. 122, 16, 5 p., 168101.Research output: Contribution to journal › Article › peer-review
Open AccessFile50 Citations (Scopus)245 Downloads (Pure) -
2018
Dynamically generated patterns in dense suspensions of active filaments
Kokkoorakunnel Ramankutty, P., Henkes, S. & Sknepnek, R. (Lead / Corresponding author), 12 Feb 2018, In: Physical Review E: Statistical, nonlinear, and soft matter physics. 97, 2, 022606.Research output: Contribution to journal › Article › peer-review
Open AccessFile69 Citations (Scopus)235 Downloads (Pure) -
Dynamical patterns in nematic active matter on a sphere
Henkes, S., Marchetti, M. C. & Sknepnek, R., 16 Apr 2018, In: Physical Review A. 97, 4, 12 p., 042605.Research output: Contribution to journal › Article › peer-review
Open AccessFile45 Citations (Scopus)225 Downloads (Pure) -
2017
Active Vertex Model for Cell-Resolution Description of Epithelial Tissue Mechanics
Barton, D. L., Henkes, S., Weijer, C. J. & Sknepnek, R. (Lead / Corresponding author), 30 Jun 2017, In: PLoS Computational Biology. 13, 6, 34 p., e1005569.Research output: Contribution to journal › Article › peer-review
Open AccessFile188 Citations (Scopus)404 Downloads (Pure) -
Cell division and death inhibit glassy behaviour of confluent tissues
Matoz-Fernandez, D. A. (Lead / Corresponding author), Martens, K., Sknepnek, R., Barrat, J. L. & Henkes, S., 7 May 2017, In: Soft Matter. 17, 13, p. 3205-3212 7 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile49 Citations (Scopus)222 Downloads (Pure) -
Non-Hookean statistical mechanics of clamped graphene ribbons
Bowick, M. J., Košmrlj, A., Nelson, D. R. & Sknepnek, R., 22 Mar 2017, In: Physical Review B: Condensed matter and materials physics. 95, 10, p. 1-7 7 p., 104109.Research output: Contribution to journal › Article › peer-review
Open AccessFile36 Citations (Scopus)188 Downloads (Pure) -
Stiffening thermal membranes by cutting
Russell, E. R., Sknepnek, R. & Bowick, M. J., 10 Jul 2017, In: Physical Review A. 96, 1, 013002.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)215 Downloads (Pure) -
2015
Active swarms on a sphere
Sknepnek, R. (Lead / Corresponding author) & Henkes, S. (Lead / Corresponding author), 17 Feb 2015, In: Physical Review E: Statistical, nonlinear, and soft matter physics. 91, 2, 5 p., 022306.Research output: Contribution to journal › Article › peer-review
Open AccessFile65 Citations (Scopus)343 Downloads (Pure) -
Effects of scars on icosahedral crystalline shell stability under external pressure
Wan, D., Bowick, M. J. (Lead / Corresponding author) & Sknepnek, R., Mar 2015, In: Physical Review E: Statistical, nonlinear, and soft matter physics. 91, 3, 033205.Research output: Contribution to journal › Article › peer-review
8 Citations (Scopus) -
On the modeling of endocytosis in yeast
Zhang, T., Sknepnek, R., Bowick, M. J. & Schwarz, J. M. (Lead / Corresponding author), 3 Feb 2015, In: Biophysical Journal. 108, 3, p. 508-519 12 p.Research output: Contribution to journal › Article › peer-review
23 Citations (Scopus) -
2014
Defect dynamics in active nematics
Giomi, L. (Lead / Corresponding author), Bowick, M. J., Mishra, P., Sknepnek, R. & Marchetti, M. C., 28 Nov 2014, In: Philosophical Transactions of the Royal Society A - Mathematical Physical and Engineering Sciences. 372, 2029, 16 p.Research output: Contribution to journal › Article › peer-review
200 Citations (Scopus) -
Optimal shapes and stresses of adherent cells on patterned substrates
Banerjee, S., Sknepnek, R. & Marchetti, M. C. (Lead / Corresponding author), 14 Apr 2014, In: Soft Matter. 10, 14, p. 2424-2430 7 p.Research output: Contribution to journal › Article › peer-review
10 Citations (Scopus) -
2013
Mechanical model of blebbing in nuclear lamin meshworks
Funkhouser, C. M., Sknepnek, R., Shimi, T., Goldman, A. E., Goldman, R. D. & de la Cruz, M. O., 26 Feb 2013, In: Proceedings of the National Academy of Sciences of the United States of America. 110, 9, p. 3248-3253 6 p.Research output: Contribution to journal › Article › peer-review
82 Citations (Scopus) -
Pathways to faceting of vesicles
Bowick, M. J. & Sknepnek, R., 14 Sept 2013, In: Soft Matter. 9, 34, p. 8088-8095 8 p.Research output: Contribution to journal › Article › peer-review
28 Citations (Scopus) -
Planar sheets meet negative-curvature liquid interfaces
Yao, Z., Bowick, M., Ma, X. & Sknepnek, R., Feb 2013, In: European Physical Society letters (EPL). 101, 4, 5 p., 44007.Research output: Contribution to journal › Article › peer-review
9 Citations (Scopus) -
Thermally active hybridization drives the crystallization of DNA-functionalized nanoparticles
Li, T. I. N. G., Sknepnek, R. & de la Cruz, M. O., 12 Jun 2013, In: Journal of the American Chemical Society. 135, 23, p. 8535-8541 7 p.Research output: Contribution to journal › Article › peer-review
70 Citations (Scopus) -
Topological defects in the buckling of elastic membranes
Funkhouser, C. M., Sknepnek, R. & de la Cruz, M. O., 2013, In: Soft Matter. 9, 1, p. 60-68 9 p.Research output: Contribution to journal › Article › peer-review
20 Citations (Scopus) -
2012
Buckling of multicomponent elastic shells with line tension
Sknepnek, R., Vernizzi, G. & de la Cruz, M. O., 2012, In: Soft Matter. 8, 3, p. 636-644 9 p.Research output: Contribution to journal › Article › peer-review
40 Citations (Scopus) -
Charge renormalization of bilayer elastic properties
Sknepnek, R., Vernizzi, G. & de la Cruz, M. O., 14 Sept 2012, In: Journal of Chemical Physics. 137, 10, 9 p., ARTN 104905.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Curvature-driven effective attraction in multicomponent membranes
Demers, M. F., Sknepnek, R. & de la Cruz, M. O., 15 Aug 2012, In: Physical Review E: Statistical, nonlinear, and soft matter physics. 86, 2, 6 p., ARTN 021504.Research output: Contribution to journal › Article › peer-review
7 Citations (Scopus) -
Modeling the crystallization of spherical nucleic acid nanoparticle conjugates with molecular dynamics simulations
Li, T. I. N. G., Sknepnek, R., Macfarlane, R. J., Mirkin, C. A. & de la Cruz, M. O., May 2012, In: Nano Letters. 12, 5, p. 2509-2514 6 p.Research output: Contribution to journal › Article › peer-review
138 Citations (Scopus) -
Molecular crystallization controlled by pH regulates mesoscopic membrane morphology
Leung, C.-Y., Palmer, L. C., Qiao, B. F., Kewalramani, S., Sknepnek, R., Newcomb, C. J., Greenfield, M. A., Vernizzi, G., Stupp, S. I., Bedzyk, M. J. & de la Cruz, M. O., Dec 2012, In: ACS Nano. 6, 12, p. 10901-10909 9 p.Research output: Contribution to journal › Article › peer-review
59 Citations (Scopus) -
Nonlinear elastic model for faceting of vesicles with soft grain boundaries
Sknepnek, R. & de la Cruz, M. O., 22 May 2012, In: Physical Review E: Statistical, nonlinear, and soft matter physics. 85, 5, 4 p., ARTN 050501.Research output: Contribution to journal › Article › peer-review
16 Citations (Scopus) -
Shapes of pored membranes
Yao, Z., Sknepnek, R., Thomas, C. K. & de la Cruz, M. O., 2012, In: Soft Matter. 8, 46, p. 11613-11619 7 p.Research output: Contribution to journal › Article › peer-review
11 Citations (Scopus) -
2011
Crystallization induced by electrostatic correlations in vesicles of mixed-valence ionic amphiphiles
Leung, C. Y., Palmer, L. C., Sknepnek, R., Vernizzi, G., Greenfield, M. A., Stupp, S. I., Bedzyk, M. J. & de la Cruz, M. O., 27 Mar 2011, In: Abstracts of Papers of the American Chemical Society. 241, 1 p.Research output: Contribution to journal › Meeting abstract › peer-review
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Electrostatic-driven ridge formation on nanoparticles coated with charged end-group ligands
Guo, P., Sknepnek, R. & de la Cruz, M. O., 14 Apr 2011, In: Journal of Physical Chemistry C. 115, 14, p. 6484-6490 7 p.Research output: Contribution to journal › Article › peer-review
32 Citations (Scopus) -
Platonic and Archimedean geometries in multicomponent elastic membranes
Vernizzi, G., Sknepnek, R. & de la Cruz, M. O., 15 Mar 2011, In: Proceedings of the National Academy of Sciences of the United States of America. 108, 11, p. 4292-4296 5 p.Research output: Contribution to journal › Article › peer-review
81 Citations (Scopus) -
Shape change of nanocontainers via a reversible ionic buckling
Sknepnek, R., Vernizzi, G. & de la Cruz, M. O., 25 May 2011, In: Physical Review Letters. 106, 21, 4 p., ARTN 215504.Research output: Contribution to journal › Article › peer-review
9 Citations (Scopus)