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Personal profile
Biography
Dr. Stuart MacGowan is a Senior Bioinformatics Scientist in Prof. Geoff Barton's group at the University of Dundee. Alongside his research into understanding the intricacies of protein sequences, structures, and human genetic variation, he also maintains and manages the Dundee Resource for Sequence Analysis and Structure Prediction (DRSASP).
Dr. MacGowan has dedicated his career to applying computational and statistical techniques to address key questions in biology and chemistry. After completing his PhD in 2014 under the guidance of Prof. Mathias Senge at Trinity College Dublin, he joined the Data Analysis Group (DAG) within Geoff Barton's group at the University of Dundee. After a few years working on collaborative projects with the DAG, including multiple projects with Prof. Irwin McLean, he shifted his attention to computational work on genetic variation in proteins.
In 2018, Dr. MacGowan was promoted to Senior Bioinformatics Scientist and appointed as the Manager of the Dundee Resource for Sequence Analysis and Structure Prediction. In this role, he oversees the development, maintenance, and enhancement of DRSASP, ensuring that it remains a valuable resource for the scientific community.
Research
At Dundee, Dr. MacGowan's research has involved collaborations with multidisciplinary teams of scientists and clinicians to identify genetic variants and candidate genes implicated in rare genetic skin disorders, atopic dermatitis and COVID-19, alongside his own theoretical work on how human population variation relates to evolutionary changes in proteins.
A cornerstone of his research is understanding the influence of genetic variation on protein structure and function, with a special focus on how variations in ligand and protein binding sites impact the overall function of the protein. He has approached this problem from the "big data" perspective, analysing sequence and structure data from hundreds of thousands of proteins to identify universal trends and patterns. He has also applied these approaches to more specific situations, such as investigating the role of common and rare mutations in the human ACE2 gene and their effect on COVID-19.
In recent years, Dr. MacGowan has maintained DRSASP, which aims to provide a comprehensive toolkit for analysing protein sequences and structures, focusing on aspects such as protein structure, disorder, crystallization, and protein-protein interactions. In addition to maintaining and enhancing this resource, Dr. MacGowan is currently working to expand its capabilities to encompass genetic variation, improve the resources reliability, and ensure the reproducibility of analyses for the future.
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
External positions
Review Editor
28 Apr 2023 → …
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Collaborations and top research areas from the last five years
Projects
- 1 Active
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The Dundee Resource for Sequence Analysis and Structure Prediction (DRSASP) - 2023 and Beyond
Abbott, J. (Investigator), Barton, G. (Investigator) & MacGowan, S. (Investigator)
Biotechnology and Biological Sciences Research Council
1/09/24 → 31/08/28
Project: Research
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Human Missense Variation is Constrained by Domain Structure and Highlights Functional and Pathogenic Residues
MacGowan, S., Madeira, F., Britto Borges, T., Schmittner, M. S., Cole, C. & Barton, G., 13 Apr 2017, Cold Spring Harbor Laboratory: BioRxiv, 35 p.Research output: Working paper/Preprint › Preprint
File357 Downloads (Pure) -
A unified analysis of evolutionary and population constraint in protein domains highlights structural features and pathogenic sites
MacGowan, S. A., Madeira, F., Britto-Borges, T. & Barton, G. J. (Lead / Corresponding author), 11 Apr 2024, (E-pub ahead of print) In: Communications Biology. 7, 10 p., 447.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)64 Downloads (Pure) -
Classification of likely functional class for ligand binding sites identified from fragment screening
Utgés, J. S., MacGowan, S. A., Ives, C. M. & Barton, G. J. (Lead / Corresponding author), 13 Mar 2024, In: Communications Biology. 7, 13 p., 320.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Citations (Scopus)86 Downloads (Pure) -
ResMAP – a saturation mutagenesis platform enabling parallel profiling of target-specific resistance conferring mutations in Plasmodium
Wall, R. (Lead / Corresponding author), MacGowan, S., Hallyburton, I., Syed, A., Ajay Castro, S., Dey, G., Milne, R., Patterson, S., Phelan, J., Wiedemar, N. W. & Wyllie, S. (Lead / Corresponding author), Oct 2024, In: MBio. 15, 10, 19 p., e01708-24.Research output: Contribution to journal › Article › peer-review
Open AccessFile34 Downloads (Pure) -
A unified approach to evolutionary conservation and population constraint in protein domains highlights structural features and pathogenic sites
MacGowan, S. A., Madeira, F., Britto-Borges, T. & Barton, G. J., 13 Jul 2023, Research Square, 53 p.Research output: Working paper/Preprint › Preprint
Open Access