16 ERA-CAPS Barley Yield Associated Networks (Joint with IPK Gatersleben as lead and University of Minnesota)

2024

Genomic resources for a historical collection of cultivated two-row European spring barley genotypes

Schreiber, M., Wonneberger, R., Haaning, A. M., Coulter, M., Russell, J., Himmelbach, A., Fiebig, A., Muehlbauer, G. J., Stein, N. & Waugh, R. (Lead / Corresponding author), 12 Jan 2024, In: Scientific Data. 11, 1, 12 p., 66.

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2 Citations (Scopus)

71 Downloads (Pure)

2023

Major chromosome 5H haplotype switch structures the European two-rowed spring barley germplasm of the past 190 years

Wonneberger, R., Schreiber, M., Haaning, A., Muehlbauer, G. J., Waugh, R. & Stein, N. (Lead / Corresponding author), Aug 2023, In: Theoretical and Applied Genetics. 136, 8, 18 p., 174.

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1 Citation (Scopus)

41 Downloads (Pure)

2022

A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

Zhang, R. (Lead / Corresponding author), Kuo, R., Coulter, M., Calixto, C. P. G., Entizne, J. C., Guo, W., Marquez, Y., Milne, L., Riegler, S., Matsui, A., Tanaka, M., Harvey, S., Gao, Y., Wießner-Kroh, T., Paniagua, A., Crespi, M., Denby, K., Hur, A. B., Huq, E. & Jantsch, M. & 19 others, Jarmolowski, A., Koester, T., Laubinger, S., Li, Q. Q., Gu, L., Seki, M., Staiger, D., Sunkar, R., Szweykowska-Kulinska, Z., Tu, S.-L., Wachter, A., Waugh, R., Xiong, L., Zhang, X.-N., Conesa, A., Reddy, A. S. N., Barta, A., Kalyna, M. & Brown, J. W. S., 7 Jul 2022, In: Genome Biology. 23, 37 p., 149.

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39 Citations (Scopus)

95 Downloads (Pure)

BaRTv2: A highly resolved barley reference transcriptome for accurate transcript-specific RNA-seq quantification

Coulter, M., Entizne, J. C., Guo, W., Bayer, M., Wonneberger, R., Milne, L., Schreiber, M., Haaning, A., Muehlbauer, G. J., McCallum, N., Fuller, J., Simpson, C., Stein, N., Brown, J. W. S., Waugh, R. & Zhang, R. (Lead / Corresponding author), 16 Aug 2022, In: Plant Journal. 111, 4, p. 1183-1202 20 p.

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16 Citations (Scopus)

233 Downloads (Pure)

Conserved signalling components coordinate epidermal patterning and cuticle deposition in barley

Liu, L., Jose, S. B., Campoli, C., Bayer, M. M., Sánchez-Diaz, M. A., Mcallister, T., Zhou, Y., Eskan, M., Milne, L., Schreiber, M., Batstone, T., Bull, I. D., Ramsay, L., von Wettstein-Knowles, P., Waugh, R., Hetherington, A. M. & McKim, S. M. (Lead / Corresponding author), 13 Oct 2022, In: Nature Communications. 13, 18 p., 6050.

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6 Citations (Scopus)

107 Downloads (Pure)

GridScore: a tool for accurate, cross-platform phenotypic data collection and visualization

Raubach, S. (Lead / Corresponding author), Schreiber, M. & Shaw, P. D., 6 Jun 2022, In: BMC Bioinformatics. 23, 8 p., 214.

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2 Citations (Scopus)

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The value of genotype-specific reference for transcriptome analyses in barley

Guo, W., Coulter, M., Waugh, R. & Zhang, R. (Lead / Corresponding author), 1 Aug 2022, In: Life Science Alliance. 5, 8, 16 p., e202101255.

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3 Citations (Scopus)

67 Downloads (Pure)

2021

3D RNA-seq: A powerful and flexible tool for rapid and accurate differential expression and alternative splicing analysis of RNA-seq data for biologists

Guo, W., Tzioutziou, N., Stephen, G., Milne, I., Calixto, C., Waugh, R., Brown, J. W. S. (Lead / Corresponding author) & Zhang, R. (Lead / Corresponding author), 2 Nov 2021, In: RNA Biology. 18, 11, 14 p.

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50 Citations (Scopus)

234 Downloads (Pure)

2019

BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq

Rapazote-Flores, P., Bayer, M., Milne, L., Mayer, C.-D., Fuller, J., Guo, W., Hedley, P. E., Morris, J., Halpin, C., Kam, J., McKim, S. M., Zwirek, M., Casao, M. C., Barakate, A., Schreiber, M., Stephen, G., Zhang, R., Brown, J. W. S., Waugh, R. & Simpson, C. G. (Lead / Corresponding author), 11 Dec 2019, In: BMC Genomics. 20, 17 p., 968.

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41 Citations (Scopus)

148 Downloads (Pure)

High-Resolution RT-PCR Analysis of Alternative Barley Transcripts

Simpson, C. G. (Lead / Corresponding author), Fuller, J., Rapazote-Flores, P., Mayer, C. D., Calixto, C. P. G., Milne, L., Hedley, P. E., Booth, C., Waugh, R. & Brown, J. W. S., 2019, Barley: Methods and Protocols. Harwood, W. A. (ed.). New York: Humana Press, Vol. 1900. p. 269-281 13 p. (Methods in Molecular Biology).

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2 Citations (Scopus)

228 Downloads (Pure)

16 ERA-CAPS Barley Yield Associated Networks (Joint with IPK Gatersleben as lead and University of Minnesota)

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