BioStudies and the Image Data Resource: Expanding Imaging Datasets, Linkage, Metadata and Value (Joint with EMBL-EBI) (Bioinformatics and Biological Resources Fund - BBR)

Swedlow, Jason (Investigator)

Molecular Cell and Developmental Biology

Status	Finished
Effective start/end date	1/07/18 → 30/06/21

Funding

Biotechnology and Biological Sciences Research Council (BB/R015384/1): £583,944.00

4 Article
1 Conference contribution
1 Comment/debate
1 Conference article
More
- 1 Letter

OME-Zarr: a cloud-optimized bioimaging file format with international community support
Moore, J., Basurto-Lozada, D., Besson, S., Bogovic, J., Bragantini, J., Brown, E. M., Burel, J-M., Casas Moreno, X., de Medeiros, G., Diel, E. E., Gault, D., Ghosh, S. S., Gold, I., Halchenko, Y. O., Hartley, M., Horsfall, D., Keller, M. S., Kittisopikul, M., Kovacs, G., Küpcü Yoldaş, A., & 49 othersKyoda, K., le Tournoulx de la Villegeorges, A., Li, T., Liberali, P., Lindner, D., Linkert, M., Lüthi, J., Maitin-Shepard, J., Manz, T., Marconato, L., McCormick, M., Lange, M., Mohamed, K., Moore, W., Norlin, N., Ouyang, W., Özdemir, B., Palla, G., Pape, C., Pelkmans, L., Pietzsch, T., Preibisch, S., Prete, M., Rzepka, N., Samee, S., Schaub, N., Sidky, H., Solak, A. C., Stirling, D. R., Striebel, J., Tischer, C., Toloudis, D., Virshup, I., Walczysko, P., Watson, A. M., Weisbart, E., Wong, F., Yamauchi, K. A., Bayraktar, O., Cimini, B. A., Gehlenborg, N., Haniffa, M., Hotaling, N., Onami, S., Royer, L. A., Saalfeld, S., Stegle, O., Theis, F. J. & Swedlow, J. R., Sept 2023, In: Histochemistry and Cell Biology. 160, p. 223–251 29 p.
Research output: Contribution to journal › Article › peer-review

Open Access
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1 Citation (Scopus)

2 Downloads (Pure)
The BioImage Archive - building a home for life-sciences microscopy data
Hartley, M., Kleywegt, G. J., Patwardhan, A., Sarkans, U., Swedlow, J. R. & Brazma, A., 15 Jun 2022, In: Journal of Molecular Biology. 434, 11, 8 p., 167505.
Research output: Contribution to journal › Article › peer-review

Open Access
File
19 Citations (Scopus)

45 Downloads (Pure)
MDEmic: a metadata annotation tool to facilitate management of FAIR image data in the bioimaging community
Kunis, S., Hänsch, S., Schmidt, C., Wong, F., Strambio-De-Castillia, C. & Weidtkamp-Peters, S., Dec 2021, In: Nature Methods. 18, p. 1416-1417 2 p.
Research output: Contribution to journal › Letter › peer-review

Open Access

9 Citations (Scopus)

BioStudies and the Image Data Resource: Expanding Imaging Datasets, Linkage, Metadata and Value (Joint with EMBL-EBI) (Bioinformatics and Biological Resources Fund - BBR)

Project Details

Funding

Fingerprint

OME-Zarr: a cloud-optimized bioimaging file format with international community support

The BioImage Archive - building a home for life-sciences microscopy data

MDEmic: a metadata annotation tool to facilitate management of FAIR image data in the bioimaging community

BioStudies and the Image Data Resource: Expanding Imaging Datasets, Linkage, Metadata and Value (Joint with EMBL-EBI) (Bioinformatics and Biological Resources Fund - BBR)

Project Details

Funding

Fingerprint

Research output

OME-Zarr: a cloud-optimized bioimaging file format with international community support

The BioImage Archive - building a home for life-sciences microscopy data

MDEmic: a metadata annotation tool to facilitate management of FAIR image data in the bioimaging community