BioStudies and the Image Data Resource: Expanding Imaging Datasets, Linkage, Metadata and Value (Joint with EMBL-EBI) (Bioinformatics and Biological Resources Fund - BBR)

Project Details

StatusFinished
Effective start/end date1/07/1830/06/21

Funding

  • Biotechnology and Biological Sciences Research Council (BB/R015384/1): £583,944.00

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  • REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology

    Sarkans, U., Chiu, W., Collinson, L., Darrow, M. C., Ellenberg, J., Grunwald, D., Hériché, J-K., Iudin, A., Martins, G. G., Meehan, T., Narayan, K., Patwardhan, A., Russell, M. R. G., Saibil, H. R., Strambio-De-Castillia, C., Swedlow, J. R., Tischer, C., Uhlmann, V., Verkade, P., Barlow, M. & 26 others, Bayraktar, O., Birney, E., Catavitello, C., Cawthorne, C., Wagner-Conrad, S., Duke, E., Paul-Gilloteaux, P., Gustin, E., Harkiolaki, M., Kankaanpää, P., Lemberger, T., McEntyre, J., Moore, J., Nicholls, A. W., Onami, S., Parkinson, H., Parsons, M., Romanchikova, M., Sofroniew, N., Swoger, J., Utz, N., Voortman, L. M., Wong, F., Zhang, P., Kleywegt, G. J. & Brazma, A., 21 May 2021, (E-pub ahead of print) In: Nature Methods. 5 p.

    Research output: Contribution to journalComment/debatepeer-review

  • Bringing Open Data to Whole Slide Imaging

    Besson, S., Leigh, R., Linkert, M., Allan, C., Burel, J-M., Carroll, M., Gault, D., Gozim, R., Li, S., Lindner, D., Moore, J., Moore, W., Walczysko, P., Wong, F. & Swedlow, J., 2019, Digital Pathology: 15th European Congress, ECDP 2019, Warwick, UK, April 10–13, 2019, Proceedings. Reyes-Aldasoro, C. C., Janowczyk, A., Veta, M., Bankhead, P. & Sirinukunwattana, K. (eds.). Switzerland: Springer , p. 3-10 8 p. (Lecture Notes in Computer Science; vol. 11435).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    Open Access
    File
    1 Citation (Scopus)
    145 Downloads (Pure)
  • A call for public archives for biological image data

    Ellenberg, J., Swedlow, J. R., Barlow, M., Cook, C. E., Sarkans, U., Patwardhan, A., Brazma, A. & Birney, E., 30 Oct 2018, In: Nature Methods. 15, 11, p. 849-854 6 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    File
    26 Citations (Scopus)
    111 Downloads (Pure)