BioStudies and the Image Data Resource: Expanding Imaging Datasets, Linkage, Metadata and Value (Joint with EMBL-EBI) (Bioinformatics and Biological Resources Fund - BBR)

Project Details

StatusFinished
Effective start/end date1/07/18 → 30/06/21

Funding

  • Biotechnology and Biological Sciences Research Council (BB/R015384/1): £583,944.00

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  • bia-binder: a web-native cloud compute service for the bioimage analysis community

    Russell, C. T., Burel, J. M., Athar, A., Li, S., Sarkans, U., Swedlow, J., Brazma, A., Hartley, M. (Lead / Corresponding author) & Uhlmann, V. (Lead / Corresponding author), Aug 2025, In: Bioinformatics. 41, 8, 5 p., btaf412.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    File
    12 Downloads (Pure)

  • OME-Zarr: a cloud-optimized bioimaging file format with international community support

    Moore, J. (Lead / Corresponding author), Basurto-Lozada, D., Besson, S., Bogovic, J., Bragantini, J., Brown, E. M., Burel, J.-M., Casas Moreno, X., de Medeiros, G., Diel, E. E., Gault, D., Ghosh, S. S., Gold, I., Halchenko, Y. O., Hartley, M., Horsfall, D., Keller, M. S., Kittisopikul, M., Kovacs, G. & Küpcü Yoldaş, A. & 49 others, Kyoda, K., le Tournoulx de la Villegeorges, A., Li, T., Liberali, P., Lindner, D., Linkert, M., Lüthi, J., Maitin-Shepard, J., Manz, T., Marconato, L., McCormick, M., Lange, M., Mohamed, K., Moore, W., Norlin, N., Ouyang, W., Özdemir, B., Palla, G., Pape, C., Pelkmans, L., Pietzsch, T., Preibisch, S., Prete, M., Rzepka, N., Samee, S., Schaub, N., Sidky, H., Solak, A. C., Stirling, D. R., Striebel, J., Tischer, C., Toloudis, D., Virshup, I., Walczysko, P., Watson, A. M., Weisbart, E., Wong, F., Yamauchi, K. A., Bayraktar, O., Cimini, B. A., Gehlenborg, N., Haniffa, M., Hotaling, N., Onami, S., Royer, L. A., Saalfeld, S., Stegle, O., Theis, F. J. & Swedlow, J. R., Sept 2023, In: Histochemistry and Cell Biology. 160, p. 223–251 29 p.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    File
    52 Citations (Scopus)
    191 Downloads (Pure)

  • The BioImage Archive - building a home for life-sciences microscopy data

    Hartley, M., Kleywegt, G. J., Patwardhan, A., Sarkans, U., Swedlow, J. R. & Brazma, A., 15 Jun 2022, In: Journal of Molecular Biology. 434, 11, 8 p., 167505.

    Research output: Contribution to journal › Article › peer-review

    Open Access
    File
    91 Citations (Scopus)
    352 Downloads (Pure)
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