BioStudies and the Image Data Resource: Expanding Imaging Datasets, Linkage, Metadata and Value (Joint with EMBL-EBI) (Bioinformatics and Biological Resources Fund - BBR)

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  • 2023

    OME-Zarr: a cloud-optimized bioimaging file format with international community support

    Moore, J. (Lead / Corresponding author), Basurto-Lozada, D., Besson, S., Bogovic, J., Bragantini, J., Brown, E. M., Burel, J.-M., Casas Moreno, X., de Medeiros, G., Diel, E. E., Gault, D., Ghosh, S. S., Gold, I., Halchenko, Y. O., Hartley, M., Horsfall, D., Keller, M. S., Kittisopikul, M., Kovacs, G. & Küpcü Yoldaş, A. & 49 others, Kyoda, K., le Tournoulx de la Villegeorges, A., Li, T., Liberali, P., Lindner, D., Linkert, M., Lüthi, J., Maitin-Shepard, J., Manz, T., Marconato, L., McCormick, M., Lange, M., Mohamed, K., Moore, W., Norlin, N., Ouyang, W., Özdemir, B., Palla, G., Pape, C., Pelkmans, L., Pietzsch, T., Preibisch, S., Prete, M., Rzepka, N., Samee, S., Schaub, N., Sidky, H., Solak, A. C., Stirling, D. R., Striebel, J., Tischer, C., Toloudis, D., Virshup, I., Walczysko, P., Watson, A. M., Weisbart, E., Wong, F., Yamauchi, K. A., Bayraktar, O., Cimini, B. A., Gehlenborg, N., Haniffa, M., Hotaling, N., Onami, S., Royer, L. A., Saalfeld, S., Stegle, O., Theis, F. J. & Swedlow, J. R., Sept 2023, In: Histochemistry and Cell Biology. 160, p. 223–251 29 p.

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    33 Citations (Scopus)
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  • 2022

    The BioImage Archive - building a home for life-sciences microscopy data

    Hartley, M., Kleywegt, G. J., Patwardhan, A., Sarkans, U., Swedlow, J. R. & Brazma, A., 15 Jun 2022, In: Journal of Molecular Biology. 434, 11, 8 p., 167505.

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    67 Citations (Scopus)
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  • 2021

    OME-NGFF: a next-generation file format for expanding bioimaging data access strategies

    Moore, J., Allan, C., Besson, S., Burel, J.-M., Diel, E., Gault, D., Kozlowski, K., Lindner, D., Linkert, M., Manz, T., Moore, W., Pape, C., Tischer, C. & Swedlow, J. R. (Lead / Corresponding author), Dec 2021, In: Nature Methods. 18, p. 1496-1498 3 p.

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    89 Citations (Scopus)
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  • 2018

    A call for public archives for biological image data

    Ellenberg, J. (Lead / Corresponding author), Swedlow, J. R. (Lead / Corresponding author), Barlow, M., Cook, C. E., Sarkans, U., Patwardhan, A., Brazma, A. (Lead / Corresponding author) & Birney, E. (Lead / Corresponding author), 30 Oct 2018, In: Nature Methods. 15, 11, p. 849-854 6 p.

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    84 Citations (Scopus)
    207 Downloads (Pure)