Development of SUPPA for Alternative Splicing Analysis from RNA-Seq Data in Plants Across Multiple Conditions

Project Details

StatusFinished
Effective start/end date1/10/1614/11/17

Funding

  • Biotechnology and Biological Sciences Research Council (BB/N022807/1): £91,650.00

Research Output

Alternative Splicing of Circadian Clock Genes Correlates With Temperature in Field-Grown Sugarcane

Dantas, L. L. B., Calixto, C. P. G., Dourado, M. M., Carneiro, M. S., Brown, J. W. S. & Hotta, C. T., 23 Dec 2019, In : Frontiers in Plant Science. 10, p. 1-15 15 p., 1614.

Research output: Contribution to journalArticle

Open Access
File
  • 1 Citation (Scopus)
    85 Downloads (Pure)

    Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs

    Calixto, C., Tzioutziou, N., James, A. B., Hornyik, C., Guo, W., Zhang, R., Nimmo, H. G. & Brown, J., 28 Feb 2019, In : Frontiers in Plant Science. 10, p. 1-16 16 p., 235.

    Research output: Contribution to journalArticle

    Open Access
    File
  • 5 Citations (Scopus)
    89 Downloads (Pure)

    TSIS: an R package to infer alternative splicing isoform switches for time-series data

    Guo, W., Calixto, C. P. G., Brown, J. W. S. & Zhang, R., 15 Oct 2017, In : Bioinformatics. 33, 20, p. 3308-3310 3 p.

    Research output: Contribution to journalArticle

    Open Access
    File
  • 7 Citations (Scopus)
    175 Downloads (Pure)