Development of SUPPA for Alternative Splicing Analysis from RNA-Seq Data in Plants Across Multiple Conditions

Brown, John (Investigator)

DArcy Thompson Unit

Status	Finished
Effective start/end date	1/10/16 → 14/11/17

Funding

Biotechnology and Biological Sciences Research Council (BB/N022807/1): £91,650.00

Data from: Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome
Calixto, C. P. G. (Creator), Guo, W. (Creator), James, A. B. (Creator), Tzioutziou, N. A. (Creator), Entizne, J. C. (Creator), Panter, P. E. (Creator), Knight, H. (Creator), Nimmo, H. (Creator), Zhang, R. (Creator) & Brown, J. W. S. (Creator), Dryad, 7 May 2019
DOI: 10.5061/dryad.fk1cj47, https://datadryad.org/stash/dataset/doi:10.5061/dryad.fk1cj47
Dataset

4 Article

Alternative Splicing of Circadian Clock Genes Correlates With Temperature in Field-Grown Sugarcane
Dantas, L. L. B., Calixto, C. P. G., Dourado, M. M., Carneiro, M. S., Brown, J. W. S. (Lead / Corresponding author) & Hotta, C. T., 23 Dec 2019, In: Frontiers in Plant Science. 10, p. 1-15 15 p., 1614.
Research output: Contribution to journal › Article › peer-review

Open Access
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18 Citations (Scopus)

166 Downloads (Pure)
Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs
Calixto, C., Tzioutziou, N., James, A. B., Hornyik, C., Guo, W., Zhang, R., Nimmo, H. G. & Brown, J. (Lead / Corresponding author), 28 Feb 2019, In: Frontiers in Plant Science. 10, p. 1-16 16 p., 235.
Research output: Contribution to journal › Article › peer-review

Open Access
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58 Citations (Scopus)

171 Downloads (Pure)
Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome
Calixto, C. P. G., Guo, W., James, A. B., Tzioutziou, N. A., Entizne, J. C., Panter, P. E., Knight, H., Nimmo, H., Zhang, R. & Brown, J. W. S., 1 Jul 2018, In: The Plant Cell. 30, 7, p. 1424-1444 21 p.
Research output: Contribution to journal › Article › peer-review

Open Access
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206 Citations (Scopus)

278 Downloads (Pure)