Dynamic Re-programming of the Cold Transcriptome in Arabidopsis (Joint with JHI)

Brown, John (Investigator)

DArcy Thompson Unit

Status	Finished
Effective start/end date	1/04/17 → 31/07/20

Funding

Biotechnology and Biological Sciences Research Council (BB/P009751/1): £412,936.00

Data from: Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome
Calixto, C. P. G. (Creator), Guo, W. (Creator), James, A. B. (Creator), Tzioutziou, N. A. (Creator), Entizne, J. C. (Creator), Panter, P. E. (Creator), Knight, H. (Creator), Nimmo, H. (Creator), Zhang, R. (Creator) & Brown, J. W. S. (Creator), Dryad, 7 May 2019
DOI: 10.5061/dryad.fk1cj47, https://datadryad.org/stash/dataset/doi:10.5061/dryad.fk1cj47
Dataset

7 Article
1 Chapter (peer-reviewed)

REVEILLE2 thermosensitive splicing: a molecular basis for the integration of nocturnal temperature information by the Arabidopsis circadian clock
James, A. B., Sharples, C., Laird, J., Armstrong, E. M., Guo, W., Tzioutziou, N., Zhang, R., Brown, J. W. S., Nimmo, H. G. & Jones, M. A. (Lead / Corresponding author), Jan 2024, In: New Phytologist. 241, 1, p. 283-297 15 p.
Research output: Contribution to journal › Article › peer-review

Open Access
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28 Downloads (Pure)
A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis
Zhang, R. (Lead / Corresponding author), Kuo, R., Coulter, M., Calixto, C. P. G., Entizne, J. C., Guo, W., Marquez, Y., Milne, L., Riegler, S., Matsui, A., Tanaka, M., Harvey, S., Gao, Y., Wießner-Kroh, T., Paniagua, A., Crespi, M., Denby, K., Hur, A. B., Huq, E. & Jantsch, M. & 19 others, Jarmolowski, A., Koester, T., Laubinger, S., Li, Q. Q., Gu, L., Seki, M., Staiger, D., Sunkar, R., Szweykowska-Kulinska, Z., Tu, S.-L., Wachter, A., Waugh, R., Xiong, L., Zhang, X.-N., Conesa, A., Reddy, A. S. N., Barta, A., Kalyna, M. & Brown, J. W. S., 7 Jul 2022, In: Genome Biology. 23, 37 p., 149.
Research output: Contribution to journal › Article › peer-review

Open Access
File
42 Citations (Scopus)

113 Downloads (Pure)
Experimental Design for Time-Series RNA-Seq Analysis of Gene Expression and Alternative Splicing
Tzioutziou, N. A., James, A. B., Guo, W., Calixto, C. P. G., Zhang, R., Nimmo, H. G. & Brown, J. W. S. (Lead / Corresponding author), 2022, Plant Circadian Networks: Methods and Protocols. Staiger, D., Davis, S. & Melaragno Davis, A. (eds.). New York: Humana Press, p. 173-188 16 p. (Methods in Molecular Biology; vol. 2398).
Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review
1 Citation (Scopus)

Dynamic Re-programming of the Cold Transcriptome in Arabidopsis (Joint with JHI)

Project Details

Funding

Fingerprint

Data from: Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome

REVEILLE2 thermosensitive splicing: a molecular basis for the integration of nocturnal temperature information by the Arabidopsis circadian clock

A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

Experimental Design for Time-Series RNA-Seq Analysis of Gene Expression and Alternative Splicing

Dynamic Re-programming of the Cold Transcriptome in Arabidopsis (Joint with JHI)

Project Details

Funding

Fingerprint

Datasets

Data from: Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome

Research output

REVEILLE2 thermosensitive splicing: a molecular basis for the integration of nocturnal temperature information by the Arabidopsis circadian clock

A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

Experimental Design for Time-Series RNA-Seq Analysis of Gene Expression and Alternative Splicing