Research output per year
Research output per year
Search results
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2019
Alternative Splicing of Circadian Clock Genes Correlates With Temperature in Field-Grown Sugarcane
Dantas, L. L. B., Calixto, C. P. G., Dourado, M. M., Carneiro, M. S., Brown, J. W. S. (Lead / Corresponding author) & Hotta, C. T., 23 Dec 2019, In: Frontiers in Plant Science. 10, p. 1-15 15 p., 1614.Research output: Contribution to journal › Article › peer-review
Open AccessFile18 Citations (Scopus)159 Downloads (Pure) -
Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs
Calixto, C., Tzioutziou, N., James, A. B., Hornyik, C., Guo, W., Zhang, R., Nimmo, H. G. & Brown, J. (Lead / Corresponding author), 28 Feb 2019, In: Frontiers in Plant Science. 10, p. 1-16 16 p., 235.Research output: Contribution to journal › Article › peer-review
Open AccessFile56 Citations (Scopus)163 Downloads (Pure) -
2018
How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY)
James, A. B. (Lead / Corresponding author), Calixto, C. P. G., Tzioutziou, N. A., Guo, W., Zhang, R., Simpson, C. G., Jiang, W., Nimmo, G. A., Brown, J. W. S. & Nimmo, H. G., 1 Jul 2018, In: Plant, Cell & Environment. 41, 7, p. 1539-1550 12 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile22 Citations (Scopus)218 Downloads (Pure) -
Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome
Calixto, C. P. G., Guo, W., James, A. B., Tzioutziou, N. A., Entizne, J. C., Panter, P. E., Knight, H., Nimmo, H., Zhang, R. & Brown, J. W. S., 1 Jul 2018, In: The Plant Cell. 30, 7, p. 1424-1444 21 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile200 Citations (Scopus)269 Downloads (Pure) -
2017
A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing
Zhang, R., Calixto, C. P. G., Marquez, Y., Venhuizen, P., Tzioutziou, N. A., Guo, W., Spensley, M., Entizne, J. C., Lewandowska, D., ten Have, S., Frei dit Frey, N., Hirt, H., James, A. B., Nimmo, H. G., Barta, A., Kalyna, M. & Brown, J. W. S. (Lead / Corresponding author), 19 May 2017, In: Nucleic Acids Research. 45, 9, p. 5061-5073 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile190 Citations (Scopus)303 Downloads (Pure) -
High-quality reference transcript datasets hold the key to transcript-specific RNA-sequencing analysis in plants
Brown, J. W. S. (Lead / Corresponding author), Calixto, C. P. G. & Zhang, R., Jan 2017, In: New Phytologist. 213, 2, p. 525-530 6 p.Research output: Contribution to journal › Review article › peer-review
24 Citations (Scopus) -
TSIS: an R package to infer alternative splicing isoform switches for time-series data
Guo, W., Calixto, C. P. G., Brown, J. W. S. & Zhang, R. (Lead / Corresponding author), 15 Oct 2017, In: Bioinformatics. 33, 20, p. 3308-3310 3 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile28 Citations (Scopus)254 Downloads (Pure) -
2015
AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript - specific expression in Arabidopsis thaliana
Zhang, R., Calixto, C. P. G., Tzioutziou, N. A., James, A. B., Simpson, C. G., Guo, W., Marquez, Y., Kalyna, M., Patro, R., Eyras, E., Barta, A., Nimmo, H. G. & Brown, J. W. S. (Lead / Corresponding author), Oct 2015, In: New Phytologist. 208, 1, p. 96-101 6 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile31 Citations (Scopus)193 Downloads (Pure) -
Evolutionary relationships among barley and Arabidopsis core circadian clock and clock-associated genes
Calixto, C. P. G., Waugh, R. & Brown, J. W. S. (Lead / Corresponding author), Feb 2015, In: Journal of Molecular Evolution. 80, 2, p. 108-119 12 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile36 Citations (Scopus)305 Downloads (Pure) -
Lost in translation: pitfalls in deciphering plant alternative splicing transcripts
Brown, J. W. S. (Lead / Corresponding author), Simpson, C. G., Marquez, Y., Gadd, G. M., Barta, A. & Kalyna, M., Aug 2015, In: The Plant Cell. 27, 8, p. 2083-2087 5 p.Research output: Contribution to journal › Article › peer-review
31 Citations (Scopus) -
2013
Alternative splicing at the intersection of biological timing, development, and stress responses
Staiger, D. & Brown, J. W. S. (Lead / Corresponding author), Oct 2013, In: The Plant Cell. 25, 10, p. 3640-56 17 p.Research output: Contribution to journal › Article › peer-review
510 Citations (Scopus)