The Image Data Resource: Making Biological Imaging Data FAIR (Joint with EMBL-EBI) (Biomedical Resources Grant)

Research output

Research output per year 2019 2021 2022 2023

• 3 Article
• 2 Letter
• 1 Comment/debate
• 1 Conference article

Research output per year

Research output per year

Search results

• 2023

  OME-Zarr: a cloud-optimized bioimaging file format with international community support

  Moore, J. (Lead / Corresponding author), Basurto-Lozada, D., Besson, S., Bogovic, J., Bragantini, J., Brown, E. M., Burel, J.-M., Casas Moreno, X., de Medeiros, G., Diel, E. E., Gault, D., Ghosh, S. S., Gold, I., Halchenko, Y. O., Hartley, M., Horsfall, D., Keller, M. S., Kittisopikul, M., Kovacs, G. & Küpcü Yoldaş, A. & 49 others, Kyoda, K., le Tournoulx de la Villegeorges, A., Li, T., Liberali, P., Lindner, D., Linkert, M., Lüthi, J., Maitin-Shepard, J., Manz, T., Marconato, L., McCormick, M., Lange, M., Mohamed, K., Moore, W., Norlin, N., Ouyang, W., Özdemir, B., Palla, G., Pape, C., Pelkmans, L., Pietzsch, T., Preibisch, S., Prete, M., Rzepka, N., Samee, S., Schaub, N., Sidky, H., Solak, A. C., Stirling, D. R., Striebel, J., Tischer, C., Toloudis, D., Virshup, I., Walczysko, P., Watson, A. M., Weisbart, E., Wong, F., Yamauchi, K. A., Bayraktar, O., Cimini, B. A., Gehlenborg, N., Haniffa, M., Hotaling, N., Onami, S., Royer, L. A., Saalfeld, S., Stegle, O., Theis, F. J. & Swedlow, J. R., Sept 2023, In: Histochemistry and Cell Biology. 160, p. 223–251 29 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • International Community 100%
  • Open Microscopy Environment 100%
  • Community Support 100%
  • File Format 100%
  • Bioimaging 100%
  18 Citations (Scopus)

  79 Downloads (Pure)
• 2022

  Nucleome Browser: an integrative and multimodal data navigation platform for 4D Nucleome

  Zhu, X. (Lead / Corresponding author), Zhang, Y., Wang, Y., Tian, D., Belmont, A. S., Swedlow, J. R. & Ma, J., Aug 2022, In: Nature Methods. 19, p. 911-913 3 p.

  Research output: Contribution to journal › Letter › peer-review
  12 Citations (Scopus)

• The BioImage Archive - building a home for life-sciences microscopy data

  Hartley, M., Kleywegt, G. J., Patwardhan, A., Sarkans, U., Swedlow, J. R. & Brazma, A., 15 Jun 2022, In: Journal of Molecular Biology. 434, 11, 8 p., 167505.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Life Sciences 100%
  • Microscopy Data 100%
  • Bioimaging 100%
  • Collection Building 100%
  • Home for Life 100%
  43 Citations (Scopus)

  174 Downloads (Pure)
• 2021

  MDEmic: a metadata annotation tool to facilitate management of FAIR image data in the bioimaging community

  Kunis, S. (Lead / Corresponding author), Hänsch, S., Schmidt, C., Wong, F., Strambio-De-Castillia, C. & Weidtkamp-Peters, S. (Lead / Corresponding author), Dec 2021, In: Nature Methods. 18, p. 1416-1417 2 p.

  Research output: Contribution to journal › Letter › peer-review

  Open Access
  13 Citations (Scopus)

• OME-NGFF: a next-generation file format for expanding bioimaging data access strategies

  Moore, J., Allan, C., Besson, S., Burel, J.-M., Diel, E., Gault, D., Kozlowski, K., Lindner, D., Linkert, M., Manz, T., Moore, W., Pape, C., Tischer, C. & Swedlow, J. R. (Lead / Corresponding author), Dec 2021, In: Nature Methods. 18, p. 1496-1498 3 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • File Format 100%
  • Access Strategy 100%
  • Bioimaging 100%
  • Data Access 100%
  • Data Type 100%
  68 Citations (Scopus)

  95 Downloads (Pure)

• REMBI: Recommended Metadata for Biological Images-enabling reuse of microscopy data in biology

  Sarkans, U. (Lead / Corresponding author), Chiu, W., Collinson, L., Darrow, M. C., Ellenberg, J., Grunwald, D., Hériché, J.-K., Iudin, A., Martins, G. G., Meehan, T., Narayan, K., Patwardhan, A., Russell, M. R. G., Saibil, H. R., Strambio-De-Castillia, C., Swedlow, J. R., Tischer, C., Uhlmann, V., Verkade, P. & Barlow, M. & 26 others, Bayraktar, O., Birney, E., Catavitello, C., Cawthorne, C., Wagner-Conrad, S., Duke, E., Paul-Gilloteaux, P., Gustin, E., Harkiolaki, M., Kankaanpää, P., Lemberger, T., McEntyre, J., Moore, J., Nicholls, A. W., Onami, S., Parkinson, H., Parsons, M., Romanchikova, M., Sofroniew, N., Swoger, J., Utz, N., Voortman, L. M., Wong, F., Zhang, P., Kleywegt, G. J. (Lead / Corresponding author) & Brazma, A. (Lead / Corresponding author), Dec 2021, In: Nature Methods. 18, p. 1418-1422 5 p.

  Research output: Contribution to journal › Comment/debate › peer-review

  • Biological Image 100%
  • Microscopy Data 100%
  • Diverse Communities 33%
  • Electron Microscopy 33%
  • Public Database 33%
  60 Citations (Scopus)
• 2019

  On bringing bioimaging data into the open (World)

  Moore, J., Kobayashi, N., Kunis, S., Onami, S., Swedlow, J. R., 2019, In: CEUR Workshop Proceedings. 2849, p. 44-53 10 p., 6.

  Research output: Contribution to journal › Conference article › peer-review

  Open Access

  File

  • Data Model 100%
  • Data Type 100%
  • Research Community 100%
  • Semantic Web Stack 100%
  • Collaborative Representation 100%
  3 Citations (Scopus)

  39 Downloads (Pure)