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  • Robbie Waugh
2019

A highly mutagenised barley (cv. Golden Promise) TILLING population coupled with strategies for screening-by-sequencing

Schreiber, M., Barakate, A., Uzrek, N., Macaulay, M., Sourdille, A., Morris, J., Hedley, P. E., Ramsay, L. & Waugh, R., 24 Aug 2019, In : Plant Methods. 15, p. 1-14 14 p., 99.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
109 Downloads (Pure)
2018

Genetic dissection of quantitative and qualitative traits using a minimum set of barley Recombinant Chromosome Substitution Lines

De la Fuente Cantó, C., Russell, J., Hackett, C. A., Booth, A., Dancey, S., George, T. S. & Waugh, R., 7 Dec 2018, In : BMC Plant Biology. 18, 1, p. 1-20 20 p., 340.

Research output: Contribution to journalArticle

Open Access
File
113 Downloads (Pure)
2014

The Barley Genome Sequence Assembly Reveals Three Additional Members of the CslF (1,3;1,4)-b-Glucan Synthase Gene Family

Schreiber, M., Wright, F., MacKenzie, K., Hedley, P. E., Schwerdt, J. G., Little, A., Burton, R. A., Fincher, G. B., Marshall, D., Waugh, R. & Halpin, C., 3 Mar 2014, In : PLoS ONE. 9, 3, p. 1-9 9 p., e90888.

Research output: Contribution to journalArticle

Open Access
File
27 Citations (Scopus)
136 Downloads (Pure)
2013

Exploitation of interspecific diversity for monocot crop improvement

King, J., Armstead, I., Harper, J., Ramsey, L., Snape, J., Waugh, R., James, C., Thomas, A., Gasior, D., Kelly, R., Roberts, L., Gustafson, P. & King, I., May 2013, In : Heredity. 110, 5, p. 475-483 9 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)
2017

Reducing stomatal density in barley improves drought tolerance without impacting on yield

Hughes, J., Hepworth, C., Dutton, C., Dunn, J. A., Hunt, L., Stephens, J., Waugh, R., Cameron, D. D. & Gray, J. E., Jun 2017, In : Plant Physiology. 174, 2, p. 776-787 12 p.

Research output: Contribution to journalArticle

Open Access
File
71 Citations (Scopus)
164 Downloads (Pure)
2019

A comparison of mainstream genotyping platforms for the evaluation and use of barley genetic resources

Darrier, B., Russell, J., Milner, S. G., Hedley, P. E., Shaw, P. D., Macaulay, M., Ramsay, L., Halpin, C., Mascher, M., Fleury, D. L., Langridge, P., Stein, N. & Waugh, R., 26 Apr 2019, In : Frontiers in Plant Science. 10, p. 1-14 14 p., 544.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
100 Downloads (Pure)
2017

Development and Evaluation of a Barley 50k iSelect SNP Array

Bayer, M. M., Rapazote-Flores, P., Ganal, M., Hedley, P. E., Macaulay, M., Plieske, J., Ramsay, L., Russell, J., Shaw, P. D., Thomas, W. & Waugh, R., 17 Oct 2017, In : Frontiers in Plant Science. 8, p. 1-10 10 p., 1792.

Research output: Contribution to journalArticle

Open Access
File
52 Citations (Scopus)
180 Downloads (Pure)
2019

Barley grain (1,3;1,4)-β-glucan content: effects of transcript and sequence variation in genes encoding the corresponding synthase and endohydrolase enzymes

Garcia-Gimenez, G., Russell, J., Aubert, M. K., Fincher, G. B., Burton, R. A., Waugh, R., Tucker, M. R. & Houston, K., 21 Nov 2019, In : Scientific Reports. 9, p. 1-11 11 p., 17250.

Research output: Contribution to journalArticle

Open Access
File
55 Downloads (Pure)
2016

Genetic diversity and genome wide association study of β-glucan content in tetraploid wheat grains

Marcotuli, I., Houston, K., Schwerdt, J. G., Waugh, R., Fincher, G. B., Burton, R. A., Blanco, A. & Gadaleta, A., 5 Apr 2016, In : PLoS ONE. 11, 4, 15 p., e0152590.

Research output: Contribution to journalArticle

Open Access
File
18 Citations (Scopus)
137 Downloads (Pure)
2019

Harnessing the potential of germplasm collections

Langridge, P. & Waugh, R., Feb 2019, In : Nature Genetics. 51, 2, p. 200-201 2 p.

Research output: Contribution to journalComment/debate

6 Citations (Scopus)
2016

A spontaneous mutation in MutL-Homolog 3 (HvMLH3) affects synapsis progression and crossover resolution in the barley desynaptic mutant des10

Colas, I., Macaulay, M., Higgins, J. D., Phillips, D., Barakate, A., Posch, M., Armstrong, S., Franklin, F. C. H., Halpin, C., Waugh, R. & Ramsay, L., Nov 2016, In : New Phytologist. 212, 3, p. 693-707 15 p.

Research output: Contribution to journalArticle

Open Access
File
15 Citations (Scopus)
112 Downloads (Pure)
2013

Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond

Mascher, M., Richmond, T. A., Gerhardt, D. J., Himmelbach, A., Clissold, L., Sampath, D., Ayling, S., Steuernagel, B., Pfeifer, M., D'Ascenzo, M., Akhunov, E. D., Hedley, P. E., Gonzales, A. M., Morrell, P. L., Kilian, B., Blattner, F. R., Scholz, U., Mayer, K. F. X., Flavell, A. J., Muehlbauer, G. J. & 3 others, Waugh, R., Jeddeloh, J. A. & Stein, N., 2013, In : Plant Journal.

Research output: Contribution to journalArticle

140 Citations (Scopus)
2011

Genetic dissection of barley morphology and development

Druka, A., Franckowiak, J., Lundqvist, U., Bonar, N., Alexander, J., Houston, K., Radovic, S., Shahinnia, F., Vendramin, V., Morgante, M., Stein, N. & Waugh, R., 1 Feb 2011, In : Plant Physiology. 155, 2, p. 617-627 11 p.

Research output: Contribution to journalArticle

105 Citations (Scopus)

Genome sequence and analysis of the tuber crop potato

The Potato Genome Sequencing Consortium, 14 Jul 2011, In : Nature. 475, 7355, p. 189-195 7 p.

Research output: Contribution to journalArticle

Open Access
1123 Citations (Scopus)
2017

Extreme suppression of lateral floret development by a single amino acid change in the VRS1 transcription factor

Sakuma, S., Lundqvist, U., Kakei, Y., Thirulogachandar, V., Suzuki, T., Hori, K., Wu, J., Tagiri, A., Rutten, T., Koppolu, R., Shimada, Y., Houston, K., Thomas, W. T. B., Waugh, R., Schnurbusch, T. & Komatsuda, T., Dec 2017, In : Plant Physiology. 175, 4, p. 1720-1731 12 p.

Research output: Contribution to journalArticle

Open Access
File
12 Citations (Scopus)
174 Downloads (Pure)
2013

Identification of crop cultivars with consistently high lignocellulosic sugar release requires the use of appropriate statistical design and modelling

Oakey, H., Shafiei, R., Comadran, J., Uzrek, N., Cullis, B., Gomez, L. D., Whitehead, C., McQueen-Mason, S. J., Waugh, R. & Halpin, C., 21 Dec 2013, In : Biotechnology for Biofuels. 6, 1, p. 1-12 12 p., 185.

Research output: Contribution to journalArticle

Open Access
File
10 Citations (Scopus)
132 Downloads (Pure)
2019

Application of a Sensitive and Reproducible Label-Free Proteomic Approach to Explore the Proteome of Individual Meiotic-Phase Barley Anthers

Lewandowska, D., Zhang, R., Colas, I., Uzrek, N. & Waugh, R., 2 Apr 2019, In : Frontiers in Plant Science. 10, p. 1-15 15 p., 393.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
124 Downloads (Pure)
2014

An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley

Liu, H., Bayer, M., Druka, A., Russell, J. R., Hackett, C. A., Poland, J., Ramsay, L., Hedley, P. E. & Waugh, R., 6 Feb 2014, In : BMC Genomics. 15, 11 p., 104.

Research output: Contribution to journalArticle

Open Access
File
93 Citations (Scopus)
191 Downloads (Pure)

Genome interplay in the grain transcriptome of hexaploid bread wheat

Pfeifer, M., Kugler, K. G., Sandve, S. R., Zhan, B., Rudi, H., Hvidsten, T. R., Mayer, K. F. X. & Olsen, O-A., 18 Jul 2014, In : Science. 345, 6194, 7 p., 1250091.

Research output: Contribution to journalArticle

157 Citations (Scopus)

Ancient hybridizations among the ancestral genomes of bread wheat

Marcussen, T., Sandve, S. R., Heier, L., Spannagl, M., Pfeifer, M., Jakobsen, K. S., Wulff, B. B. H., Steuernagel, B., Mayer, K. F. X. & Olsen, O-A., 18 Jul 2014, In : Science. 345, 6194, 4 p., 1250092.

Research output: Contribution to journalArticle

277 Citations (Scopus)
2016

The Maltase Involved in Starch Metabolism in Barley Endosperm Is Encoded by a Single Gene

Andriotis, V. M. E., Saalbach, G., Waugh, R., Field, R. A. & Smith, A. M., 24 Mar 2016, In : PLoS ONE. 11, 3, p. 1-13 13 p., e0151642.

Research output: Contribution to journalArticle

Open Access
File
5 Citations (Scopus)
136 Downloads (Pure)

SNP-based QTL mapping of 15 complex traits in barley under rain-fed and well-watered conditions by a mixed modeling approach

Mora, F., Quitral, Y. A., Matus, I., Russell, J., Waugh, R. & Del Pozo, A., 27 Jun 2016, In : Frontiers in Plant Science. 7, 11 p., 909.

Research output: Contribution to journalArticle

Open Access
File
22 Citations (Scopus)
149 Downloads (Pure)
2014

Genetic Diversity and Ecological Niche Modelling of Wild Barley: Refugia, Large-Scale Post-LGM Range Expansion and Limited Mid-Future Climate Threats?

Russell, J., Van Zonneveld, M., Dawson, I. K., Booth, A., Waugh, R. & Steffenson, B., 5 Feb 2014, In : PLoS ONE. 9, 2, p. 1-10 10 p., e86021.

Research output: Contribution to journalArticle

Open Access
File
25 Citations (Scopus)
126 Downloads (Pure)
2016

Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley

Mascher, M., J. Schuenemann, V., Davidovich, U., Marom, N., Himmelbach, A., Hübner, S., Korol, A., David, M., Reiter, E., Riehl, S., Schreiber, M., Vohr, S. H., Green, R. E., Dawson, I. K., Russell, J., Kilian, B., Muehlbauer, G. J., Waugh, R., Fahima, T., Krause, J. & 2 others, Weiss, E. & Stein, N., Sep 2016, In : Nature Genetics. 48, 9, p. 1089-1093 5 p.

Research output: Contribution to journalLetter

Open Access
File
56 Citations (Scopus)
350 Downloads (Pure)
2020

A Genome Assembly of the Barley 'Transformation Reference' Cultivar Golden Promise

Schreiber, M., Mascher, M., Wright, J., Padmarasu, S., Himmelbach, A., Heavens, D., Milne, L., Clavijo, B. J., Stein, N. & Waugh, R., 1 Jun 2020, In : G3 : Genes, Genomes, Genetics. 10, 6, p. 1823-1827 5 p.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
15 Downloads (Pure)
2019

BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq

Rapazote-Flores, P., Bayer, M., Milne, L., Mayer, C-D., Fuller, J., Guo, W., Hedley, P. E., Morris, J., Halpin, C., Kam, J., McKim, S. M., Zwirek, M., Casao, M. C., Barakate, A., Schreiber, M., Stephen, G., Zhang, R., Brown, J. W. S., Waugh, R. & Simpson, C. G., 11 Dec 2019, In : BMC Genomics. 20, p. 1-17 17 p., 968.

Research output: Contribution to journalArticle

Open Access
File
2 Citations (Scopus)
51 Downloads (Pure)
2014

The USDA Barley Core Collection: Genetic Diversity, Population Structure, and Potential for Genome-Wide Association Studies

Muñoz-Amatriaín, M., Cuesta-Marcos, A., Endelman, J. B., Comadran, J., Bonman, J. M., Bockelman, H. E., Chao, S., Russell, J., Waugh, R., Hayes, P. M. & Muehlbauer, G. J., 14 Apr 2014, In : PLoS ONE. 9, 4, p. 1-13 13 p., e94688.

Research output: Contribution to journalArticle

Open Access
File
114 Citations (Scopus)
125 Downloads (Pure)
2011
2019

Tracing the ancestry of modern bread wheats

Pont, C., Leroy, T., Seidel, M., Tondelli, A., Duchemin, W., Armisen, D., Lang, D., Bustos-Korts, D., Goué, N., Balfourier, F., Molnár-Láng, M., Lage, J., Kilian, B., Özkan, H., Waite, D., Dyer, S., Letellier, T., Alaux, M., Russell, J., Keller, B. & 9 others, van Eeuwijk, F., Spannagl, M., Mayer, K. F. X., Waugh, R., Stein, N., Cattivelli, L., Haberer, G., Charmet, G. & Salse, J., 1 May 2019, In : Nature Genetics. 51, 5, p. 905-911 7 p.

Research output: Contribution to journalArticle

Open Access
File
17 Citations (Scopus)
52 Downloads (Pure)
2014

Exploiting barley genetic resources for genomewide association scans (GWAS)

Waugh, R., Flavell, A. J., Russell, J., Thomas, W. B., Ramsay, L. & Comadran, J., 1 Jan 2014, Genomics of Plant Genetic Resources: Volume 1. Managing, Sequencing and Mining Genetic Resources. Springer Netherlands, p. 237-254 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Citations (Scopus)
2011

Analysis of > 1000 single nucleotide polymorphisms in geographically matched samples of landrace and wild barley indicates secondary contact and chromosome-level differences in diversity around domestication genes

Russell, J., Dawson, I. K., Flavell, A. J., Steffenson, B., Weltzien, E., Booth, A., Ceccarelli, S., Grando, S. & Waugh, R., 2011, In : New Phytologist. 191, 2, p. 564-578 15 p.

Research output: Contribution to journalArticle

55 Citations (Scopus)
2017

The repetitive landscape of the 5100 Mbp barley genome

Wicker, T., Schulman, A. H., Tanskanen, J., Spannagl, M., Twardziok, S., Mascher, M., Springer, N. M., Li, Q., Waugh, R., Li, C., Zhang, G., Stein, N., Mayer, K. F. X. & Gundlach, H., 20 Dec 2017, In : Mobile DNA. 8, p. 1-16 16 p., 22.

Research output: Contribution to journalArticle

Open Access
File
17 Citations (Scopus)
150 Downloads (Pure)
2014

In silico identification and characterization of conserved plant microRNAs in barley

Wu, X., Hornyik, C., Bayer, M., Marshall, D., Waugh, R. & Zhang, R., Sep 2014, In : Central European Journal of Biology. 9, 9, p. 841-852 12 p.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
202 Downloads (Pure)
2012

Analysis of the barley bract suppression gene Trd1

Houston, K., Druka, A., Bonar, N., Macaulay, M., Lundqvist, U., Franckowiak, J., Morgante, M., Stein, N. & Waugh, R., Jun 2012, In : Theoretical and Applied Genetics. 125, 1, p. 33-45 13 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)
2014

The Synaptonemal Complex Protein ZYP1 Is Required for Imposition of Meiotic Crossovers in Barley

Barakate, A., Higgins, J. D., Vivera, S., Stephens, J., Perry, R. M., Ramsay, L., Colas, I., Oakey, H., Waugh, R., Franklin, F. C. H., Armstrong, S. J. & Halpin, C., Feb 2014, In : Plant Cell. 26, 2, p. 729-740 12 p.

Research output: Contribution to journalArticle

30 Citations (Scopus)
2015

A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome

Chapman, J. A., Mascher, M., Buluç, A., Barry, K., Georganas, E., Session, A., Strnadova, V., Jenkins, J., Sehgal, S., Oliker, L., Schmutz, J., Yelick, K. A., Scholz, U., Waugh, R., Poland, J. A., Muehlbauer, G. J., Stein, N. & Rokhsar, D. S., 31 Jan 2015, In : Genome Biology. 16, 1, p. 1-17 17 p., 26.

Research output: Contribution to journalArticle

Open Access
File
150 Citations (Scopus)
136 Downloads (Pure)
2011

Combining genetical genomics and bulked segregant analysis-based diverential expression: An approach to gene localization

Chen, X., Hedley, P. E., Morris, J., E, H. L. R. & Waugh, N. R., 1 May 2011, In : Theoretical and Applied Genetics. 122, 7, p. 1375-1383 9 p.

Research output: Contribution to journalArticle

Open Access
File
15 Citations (Scopus)
61 Downloads (Pure)
2018

ELIGULUM-A regulates lateral branch and leaf development in barley

Okagaki, R. J., Haaning, A., Bilgic, H., Heinen, S., Druka, A., Bayer, M., Waugh, R. & Muehlbauer, G. J., 1 Apr 2018, In : Plant Physiology. 176, 4, p. 2750-2760 11 p.

Research output: Contribution to journalArticle

Open Access
File
8 Citations (Scopus)
186 Downloads (Pure)
2017

A Genome Wide Association Study of arabinoxylan content in 2-row spring barley grain

Hassan, A. S., Houston, K., Lahnstein, J., Shirley, N., Schwerdt, J. G., Gidley, M. J., Waugh, R., Little, A. & Burton, R. A., 3 Aug 2017, In : PLoS ONE. 12, 8, p. 1-19 19 p., e0182537.

Research output: Contribution to journalArticle

Open Access
File
12 Citations (Scopus)
210 Downloads (Pure)
2015

A genome-wide association study for culm cellulose content in barley reveals candidate genes co-expressed with members of the Cellulose Synthase A gene family

Houston, K., Burton, R. A., Sznajder, B., Rafalski, A. J., Dhugga, K. S., Mather, D. E., Taylor, J., Steffenson, B. J., Waugh, R. & Fincher, G. B., 8 Jul 2015, In : PLoS ONE. 10, 7, 21 p., e0130890.

Research output: Contribution to journalArticle

9 Citations (Scopus)
2012

High resolution mapping of dense spike-ar (dsp.ar) to the genetic centromere of barley chromosome 7H

Shahinnia, F., Druka, A., Franckowiak, J., Morgante, M., Waugh, R. & Stein, N., Feb 2012, In : Theoretical and Applied Genetics. 124, 2, p. 373-384 12 p.

Research output: Contribution to journalArticle

28 Citations (Scopus)
2016

A homolog of blade-on-petiole 1 and 2 (BOP1/2) controls internode length and homeotic changes of the barley inflorescence

Jost, M., Taketa, S., Mascher, M., Himmelbach, A., Yuo, T., Shahinnia, F., Rutten, T., Druka, A., Schmutzer, T., Steuernagel, B., Beier, S., Taudien, S., Scholz, U., Morgante, M., Waugh, R. & Stein, N., Jun 2016, In : Plant Physiology. 171, 2, p. 1113-1127 15 p.

Research output: Contribution to journalArticle

Open Access
File
21 Citations (Scopus)
306 Downloads (Pure)
2018

The Pseudogenes of Barley

Prade, V. M., Gundlach, H., Twardziok, S., Chapman, B., Tan, C., Langridge, P., Schulman, A. H., Stein, N., Waugh, R., Zhang, G., Platzer, M., Li, C., Spannagl, M. & Mayer, K. F. X., 7 Jan 2018, In : Plant Journal. 93, 3, p. 502-514 13 p.

Research output: Contribution to journalArticle

Open Access
File
6 Citations (Scopus)
122 Downloads (Pure)
2015

Genome wide association mapping for arabinoxylan content in a collection of tetraploid wheats

Marcotuli, I., Houston, K., Waugh, R., Fincher, G. B., Burton, R. A., Blanco, A. & Gadaleta, A., 15 Jul 2015, In : PLoS ONE. 10, 7, p. 1-14 14 p., e0132787.

Research output: Contribution to journalArticle

Open Access
File
28 Citations (Scopus)
131 Downloads (Pure)
2016

Genomic Selection in multi-environment crop trials

Oakey, H., Cullis, B., Thompson, R., Comradan, J., Halpin, C. & Waugh, R., 1 May 2016, In : G3 : Genes, Genomes, Genetics. 6, 5, p. 1313-1326 14 p.

Research output: Contribution to journalArticle

Open Access
File
32 Citations (Scopus)
162 Downloads (Pure)
2013

FR-H3: a new QTL to assist in the development of fall-sown barley with superior low temperature tolerance

Fisk, S. P., Cuesta-Marcos, A., Cistue, L., Russell, J., Smith, K. P., Baenziger, S., Bedo, Z., Corey, A., Filichkin, T., Karsai, I., Waugh, R. & Hayes, P. M., 2013, In : Theoretical and Applied Genetics. 126, 2, p. 335-347 13 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)

Anchoring and ordering NGS contig assemblies by population sequencing (POPSEQ)

Mascher, M., Muehlbauer, G. J., Rokhsar, D. S., Chapman, J., Schmutz, J., Barry, K., Munoz-Amatriain, M., Close, T. J., Wise, R. P., Schulman, A. H., Himmelbach, A., Mayer, K. F. X., Scholz, U., Poland, J. A., Stein, N. & Waugh, R., Nov 2013, In : Plant Journal. 76, 4, p. 718-727 10 p.

Research output: Contribution to journalArticle

168 Citations (Scopus)
2011

INTERMEDIUM-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 1

Ramsay, L., Comadran, J., Druka, A., Marshall, D. F., Thomas, W. T. B., Macaulay, M., MacKenzie, K., Simpson, C., Fuller, J., Bonar, N., Hayes, P. M., Lundqvist, U., Franckowiak, J. D., Close, T. J., Muehlbauer, G. J. & Waugh, R., Feb 2011, In : Nature Genetics. 43, 2, p. 169-172 4 p.

Research output: Contribution to journalLetter

172 Citations (Scopus)
2020

Barley sodium content is regulated by natural variants of the Na+ transporter HvHKT1;5

Houston, K., Qiu, J., Wege, S., Hrmova, M., Oakey, H., Qu, Y., Smith, P., Situmorang, A., Macaulay, M., Flis, P., Bayer, M., Roy, S., Halpin, C., Russell, J., Schreiber, M., Byrt, C., Gilliham, M., Salt, D. E. & Waugh, R., 22 May 2020, In : Communications Biology. 3, 1, p. 1-9 9 p., 258.

Research output: Contribution to journalArticle

Open Access
File
1 Citation (Scopus)
17 Downloads (Pure)
2012

Genome-wide association mapping of agronomic and morphologic traits in highly structured populations of barley cultivars

Wang, M., Jiang, N., Jia, T., Leach, L., Cockram, J., Waugh, R., Ramsay, L., Thomas, B. & Luo, Z., 1 Jan 2012, In : Theoretical and Applied Genetics. 124, 2, p. 233-246 14 p.

Research output: Contribution to journalArticle

79 Citations (Scopus)