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• 2018

  How does temperature affect splicing events? Isoform switching of splicing factors regulates splicing of LATE ELONGATED HYPOCOTYL (LHY)

  James, A. B., Calixto, C. P. G., Tzioutziou, N. A., Guo, W., Zhang, R., Simpson, C. G., Jiang, W., Nimmo, G. A., Brown, J. W. S. & Nimmo, H. G., 1 Jul 2018, In: Plant, Cell & Environment. 41, 7, p. 1539-1550 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Hypocotyl
  • RNA Splicing Factors
  • hypocotyls
  • Protein Isoforms
  • Temperature
  8 Citations (Scopus)

  163 Downloads (Pure)
• 2016

  Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation

  Russell, J., Mascher, M., Dawson, I. K., Kyriakidis, S., Calixto, C., Freund, F., Bayer, M., Milne, I., Marshall-Griffiths, T., Heinen, S., Hofstad, A., Sharma, R., Himmelbach, A., Knauft, M., van Zonneveld, M., Brown, J., Schmid, K., Kilian, B., Muehlbauer, G. J., Stein, N. & 1 others, Waugh, R., 18 Jul 2016, In: Nature Genetics. 48, p. 1024-1030 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Hordeum
  • Exome
  • Domestication
  • Gardens
  • Genome
  97 Citations (Scopus)

  706 Downloads (Pure)
• 2018

  Rapid and dynamic alternative splicing impacts the Arabidopsis cold response transcriptome

  Calixto, C. P. G., Guo, W., James, A. B., Tzioutziou, N. A., Entizne, J. C., Panter, P. E., Knight, H., Nimmo, H., Zhang, R. & Brown, J. W. S., 1 Jul 2018, In: Plant Cell. 30, 7, p. 1424-1444 21 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Arabidopsis
  • alternative splicing
  • Alternative Splicing
  • Transcriptome
  • transcriptome
  65 Citations (Scopus)

  158 Downloads (Pure)
• 2016

  Monitoring alternative splicing changes in Arabidopsis circadian clock genes

  Simpson, C. G., Fuller, J., Calixto, C. P. G., McNicol, J., Booth, C., Brown, J. W. S. & Staiger, D., 2016, Environmental responses in plants: methods and protocols. Duque, P. (ed.). New York: Springer , p. 119-132 14 p. (Methods in molecular biology; vol. 1398).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

  • Arabidopsis
  • Circadian Clocks
  • Alternative Splicing
  • Ecotype
  • Physiological Stress
  7 Citations (Scopus)

• The Arabidopsis SR45 splicing factor, a negative regulator of sugar signaling, modulates SNF1-related protein kinase 1 (SnRK1) stability

  Carvalho, R. F., Szakonyi, D., Simpson, C. G., Barbosa, I. C. R., Brown, J. W. S., Baena-González, E. & Duque, P., 19 Jul 2016, In: Plant Cell. 28, 8, p. 1910-1925 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • protein kinases
  • Arabidopsis
  • sugars
  • alternative splicing
  • glucose
  31 Citations (Scopus)

  269 Downloads (Pure)

• Alternative splicing of barley clock genes in response to low temperature: evidence for alternative splicing conservation

  Calixto, C. P. G., Simpson, C. G., Waugh, R. & Brown, J. W. S., 13 Dec 2016, In: PLoS ONE. 11, 12, p. 1-24 24 p., e0168028.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Hordeum
  • alternative splicing
  • Alternative Splicing
  • Conservation
  • Genes
  10 Citations (Scopus)

  167 Downloads (Pure)