Find Research outputs

Search results

• 2016

  Monitoring alternative splicing changes in Arabidopsis circadian clock genes

  Simpson, C. G., Fuller, J., Calixto, C. P. G., McNicol, J., Booth, C., Brown, J. W. S. & Staiger, D., 2016, Environmental responses in plants: methods and protocols. Duque, P. (ed.). New York: Springer , p. 119-132 14 p. (Methods in molecular biology; vol. 1398).

  Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review

  • Arabidopsis
  • Circadian Clocks
  • Alternative Splicing
  • Ecotype
  • Physiological Stress
  7 Citations (Scopus)

• Alternative splicing of barley clock genes in response to low temperature: evidence for alternative splicing conservation

  Calixto, C. P. G., Simpson, C. G., Waugh, R. & Brown, J. W. S., 13 Dec 2016, In: PLoS ONE. 11, 12, p. 1-24 24 p., e0168028.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Hordeum
  • alternative splicing
  • Alternative Splicing
  • Conservation
  • Genes
  10 Citations (Scopus)

  168 Downloads (Pure)

• The Arabidopsis SR45 splicing factor, a negative regulator of sugar signaling, modulates SNF1-related protein kinase 1 (SnRK1) stability

  Carvalho, R. F., Szakonyi, D., Simpson, C. G., Barbosa, I. C. R., Brown, J. W. S., Baena-González, E. & Duque, P., 19 Jul 2016, In: Plant Cell. 28, 8, p. 1910-1925 16 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • protein kinases
  • Arabidopsis
  • sugars
  • alternative splicing
  • glucose
  31 Citations (Scopus)

  269 Downloads (Pure)
• 2019

  Alternative Splicing of Circadian Clock Genes Correlates With Temperature in Field-Grown Sugarcane

  Dantas, L. L. B., Calixto, C. P. G., Dourado, M. M., Carneiro, M. S., Brown, J. W. S. & Hotta, C. T., 23 Dec 2019, In: Frontiers in Plant Science. 10, p. 1-15 15 p., 1614.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • alternative splicing
  • circadian clocks
  • sugarcane
  • temperature
  • genes
  1 Citation (Scopus)

  111 Downloads (Pure)

• Light Regulates Plant Alternative Splicing through the Control of Transcriptional Elongation

  Godoy Herz, M. A., Kubaczka, M. G., Brzyżek, G., Servi, L., Krzyszton, M., Simpson, C., Brown, J., Swiezewski, S., Petrillo, E. & Kornblihtt, A. R., 7 Mar 2019, In: Molecular Cell. 73, 5, p. 1066-1074.e3 13 p.

  Research output: Contribution to journal › Article › peer-review

  • Alternative Splicing
  • Light
  • Chloroplasts
  • Arabidopsis
  • transcription factor S-II
  31 Citations (Scopus)

• Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs

  Calixto, C., Tzioutziou, N., James, A. B., Hornyik, C., Guo, W., Zhang, R., Nimmo, H. G. & Brown, J., 28 Feb 2019, In: Frontiers in Plant Science. 10, p. 1-16 16 p., 235.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • non-coding RNA
  • alternative splicing
  • Arabidopsis
  • small interfering RNA
  • time series analysis
  14 Citations (Scopus)

  111 Downloads (Pure)
• 2016

  Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation

  Russell, J., Mascher, M., Dawson, I. K., Kyriakidis, S., Calixto, C., Freund, F., Bayer, M., Milne, I., Marshall-Griffiths, T., Heinen, S., Hofstad, A., Sharma, R., Himmelbach, A., Knauft, M., van Zonneveld, M., Brown, J., Schmid, K., Kilian, B., Muehlbauer, G. J., Stein, N. & 1 others, Waugh, R., 18 Jul 2016, In: Nature Genetics. 48, p. 1024-1030 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Hordeum
  • Exome
  • Domestication
  • Gardens
  • Genome
  97 Citations (Scopus)

  710 Downloads (Pure)