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Article
A high quality Arabidopsis transcriptome for accurate transcript-level analysis of alternative splicing
Zhang, R., Calixto, C. P. G., Marquez, Y., Venhuizen, P., Tzioutziou, N. A., Guo, W., Spensley, M., Entizne, J. C., Lewandowska, D., ten Have, S., Frei dit Frey, N., Hirt, H., James, A. B., Nimmo, H. G., Barta, A., Kalyna, M. & Brown, J. W. S., 19 May 2017, In: Nucleic Acids Research. 45, 9, p. 5061-5073 13 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile92 Citations (Scopus)221 Downloads (Pure) -
Alternative splicing of barley clock genes in response to low temperature: evidence for alternative splicing conservation
Calixto, C. P. G., Simpson, C. G., Waugh, R. & Brown, J. W. S., 13 Dec 2016, In: PLoS ONE. 11, 12, p. 1-24 24 p., e0168028.Research output: Contribution to journal › Article › peer-review
Open AccessFile11 Citations (Scopus)174 Downloads (Pure) -
Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size
Guo, W., Calixto, C. P. G., Tzioutziou, N., Lin, P., Waugh, R., Brown, J. W. S. & Zhang, R., 19 Jun 2017, In: BMC Systems Biology. 11, p. 1-12 12 p., 62.Research output: Contribution to journal › Article › peer-review
Open AccessFile8 Citations (Scopus)180 Downloads (Pure) -
Exome sequencing of geographically diverse barley landraces and wild relatives gives insights into environmental adaptation
Russell, J., Mascher, M., Dawson, I. K., Kyriakidis, S., Calixto, C., Freund, F., Bayer, M., Milne, I., Marshall-Griffiths, T., Heinen, S., Hofstad, A., Sharma, R., Himmelbach, A., Knauft, M., van Zonneveld, M., Brown, J., Schmid, K., Kilian, B., Muehlbauer, G. J., Stein, N. & 1 others, , 18 Jul 2016, In: Nature Genetics. 48, p. 1024-1030 7 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile103 Citations (Scopus)750 Downloads (Pure) -
The Arabidopsis SR45 splicing factor, a negative regulator of sugar signaling, modulates SNF1-related protein kinase 1 (SnRK1) stability
Carvalho, R. F., Szakonyi, D., Simpson, C. G., Barbosa, I. C. R., Brown, J. W. S., Baena-González, E. & Duque, P., 19 Jul 2016, In: Plant Cell. 28, 8, p. 1910-1925 16 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile31 Citations (Scopus)278 Downloads (Pure) -
TSIS: an R package to infer alternative splicing isoform switches for time-series data
Guo, W., Calixto, C. P. G., Brown, J. W. S. & Zhang, R., 15 Oct 2017, In: Bioinformatics. 33, 20, p. 3308-3310 3 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile9 Citations (Scopus)220 Downloads (Pure) -
Chapter (peer-reviewed)
Monitoring alternative splicing changes in Arabidopsis circadian clock genes
Simpson, C. G., Fuller, J., Calixto, C. P. G., McNicol, J., Booth, C., Brown, J. W. S. & Staiger, D., 2016, Environmental responses in plants: methods and protocols. Duque, P. (ed.). New York: Springer , p. 119-132 14 p. (Methods in molecular biology; vol. 1398).Research output: Chapter in Book/Report/Conference proceeding › Chapter (peer-reviewed) › peer-review
7 Citations (Scopus) -
Review article
High-quality reference transcript datasets hold the key to transcript-specific RNA-sequencing analysis in plants
Brown, J. W. S., Calixto, C. P. G. & Zhang, R., Jan 2017, In: New Phytologist. 213, 2, p. 525-530 6 p.Research output: Contribution to journal › Review article › peer-review
8 Citations (Scopus)