Find Research Outputs

Search results

• Article

  A critical base pair in k-turns determines the conformational class adopted, and correlates with biological function

  Huang, L., Wang, J. & Lilley, D. M. J., 20 Jun 2016, In: Nucleic Acids Research. 44, 11, p. 5390-5398 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Base Pairing
  • U4 small nuclear RNA
  • Riboswitch
  • RNA
  • Hydrogen Bonding
  12 Citations (Scopus)

  293 Downloads (Pure)

• A quasi-cyclic RNA nano-scale molecular object constructed using kink turns

  Huang, L. & Lilley, D. M. J., 7 Sep 2016, In: Nanoscale. 8, 33, p. 15189-15195 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Crystal lattices
  • RNA
  • Molecules
  • X ray crystallography
  • Cyclohexane
  8 Citations (Scopus)

  185 Downloads (Pure)

• Breeding progress and preparedness for mass-scale deployment of perennial lignocellulosic biomass crops switchgrass, miscanthus, willow and poplar

  Clifton-Brown, J., Harfouche, A., Casler, M. D., Dylan Jones, H., Macalpine, W. J., Murphy-Bokern, D., Smart, L. B., Adler, A., Ashman, C., Awty-Carroll, D., Bastien, C., Bopper, S., Botnari, V., Brancourt-Hulmel, M., Chen, Z., Clark, L. V., Cosentino, S., Dalton, S., Davey, C., Dolstra, O. & 39 others, Donnison, I., Flavell, R., Greef, J., Hanley, S., Hastings, A., Hertzberg, M., Hsu, T. W., Huang, L. S., Iurato, A., Jensen, E., Jin, X., Jørgensen, U., Kiesel, A., Kim, D. S., Liu, J., McCalmont, J. P., McMahon, B. G., Mos, M., Robson, P., Sacks, E. J., Sandu, A., Scalici, G., Schwarz, K., Scordia, D., Shafiei, R., Shield, I., Slavov, G., Stanton, B. J., Swaminathan, K., Taylor, G., Torres, A. F., Trindade, L. M., Tschaplinski, T., Tuskan, G. A., Yamada, T., Yeon Yu, C., Zalesny, R. S., Zong, J. & Lewandowski, I., Jan 2019, In: Global Change Biology: Bioenergy. 11, 1, p. 118-151 34 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Miscanthus
  • Panicum virgatum
  • energy crops
  • Crops
  • willows
  35 Citations (Scopus)

  160 Downloads (Pure)

• Breeding strategies to improve Miscanthus as a sustainable source of biomass for bioenergy and biorenewable products

  Clifton-Brown, J., Schwarz, K. U., Awty-Carroll, D., Iurato, A., Meyer, H., Greef, J., Gwyn, J., Mos, M., Ashman, C., Hayes, C., Huang, L., Norris, J., Rodgers, C., Scordia, D., Shafiei, R., Squance, M., Swaller, T., Youell, S., Cosentino, S., Flavell, R. & 2 others, Donnison, I. & Robson, P., 24 Oct 2019, In: Agronomy. 9, 11, p. 1-17 17 p., 673.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Miscanthus
  • bioenergy
  • biomass
  • breeding
  • East Asia
  7 Citations (Scopus)

  81 Downloads (Pure)

• Control of box C/D snoRNP assembly by N6-methylation of adenine

  Huang, L., Ashraf, S., Wang, J. & Lilley, D. M. J., 1 Sep 2017, In: EMBO Reports. 18, 9, p. 1473-1671 15 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Small Nucleolar Ribonucleoproteins
  • Methylation
  • Adenine
  • RNA
  • Sugars
  17 Citations (Scopus)

  175 Downloads (Pure)

• Crystal structure and ligand-induced folding of the SAM/SAH riboswitch

  Huang, L., Liao, T-W., Wang, J., Ha, T. & Lilley, D., 27 Jul 2020, In: Nucleic Acids Research. 48, 13, p. 7545-7556 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Riboswitch
  • Ligands
  • Ribosomes
  • Base Pairing
  • Binding Sites
  20 Downloads (Pure)

• Effect of methylation of adenine N6 on kink turn structure depends on location

  Ashraf, S., Huang, L. & Lilley, D., 2019, In: RNA Biology. 16, 10, p. 1377-1385 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Adenine
  • Base Pairing
  • Protein Binding
  • Methylation
  • RNA Folding
  1 Citation (Scopus)

  107 Downloads (Pure)

• Functional organization of box C/D RNA-guided RNA methyltransferase

  Yang, Z., Wang, J., Huang, L., Lilley, D. M. J. & Ye, K., 21 May 2020, In: Nucleic Acids Research. 48, 9, p. 5094-5105 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • DNA-like RNA
  • Methyltransferases
  • RNA
  • Guide RNA
  • Proteins
  19 Downloads (Pure)

• G-quadruplex structures trigger RNA phase separation

  Zhang, Y., Yang, M., Duncan, S., Yang, X., Abdelhamid, M. A. S., Huang, L., Zhang, H., Benfey, P. N., Waller, Z. A. E. & Ding, Y., 16 Dec 2019, In: Nucleic Acids Research. 47, 22, p. 11746-11754 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • G-Quadruplexes
  • RNA
  • Cell Separation
  • Cytoskeleton
  • Organelles
  6 Citations (Scopus)

  69 Downloads (Pure)

• RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

  Miao, Z., Adamiak, R. W., Antczak, M., Boniecki, M. J., Bujnicki, J. M., Chen, S-J., Cheng, C. Y., Cheng, Y., Chou, F-C., Das, R., Dokholyan, N. V., Ding, F., Geniesse, C., Jiang, Y., Joshi, A., Krokhotin, A., Magnus, M., Mailhot, O., Major, F., Mann, T. H. & 30 others, Piatkowski, P., Pluta, R., Popenda, M., Sarzynska, J., Sun, L., Szachniuk, M., Tian, S., Wang, J., Wang, J., Watkins, A. M., Wiedemann, J., Xiao, Y., Xu, X., Yesselman, J. D., Zhang, D., Zhang, Y., Zhang, Z., Zhao, C., Zhao, P., Zhou, Y., Zok, T., Zyla, A., Ren, A., Batey, R. T., Golden, B. L., Huang, L., Lilley, D. M., Liu, Y., Patel, D. J. & Westhof, E., 1 Aug 2020, In: RNA: a Publication of the RNA Society. 26, 8, p. 982-995 14 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Catalytic RNA
  • RNA
  • Ligands
  • Riboswitch
  • Publications
  4 Citations (Scopus)

  38 Downloads (Pure)

• Sequence determinants of the folding properties of box C/D kink-turns in RNA

  Ashraf, S., Huang, L. & Lilley, D. M. J., Dec 2017, In: RNA: a Publication of the RNA Society. 23, 12, p. 1927-1935 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Small Nucleolar Ribonucleoproteins
  • Riboswitch
  • Metals
  • Ions
  • RNA
  3 Citations (Scopus)

  161 Downloads (Pure)

• Structure and ligand binding of the ADP-binding domain of the NAD⁺ riboswitch

  Huang, L., Wang, J. & Lilley, D. M. J., Jul 2020, In: RNA: a Publication of the RNA Society. 26, 7, p. 878-887 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Riboswitch
  • NAD
  • Adenosine Diphosphate
  • Ligands
  • Base Pairing
  4 Citations (Scopus)

  20 Downloads (Pure)

• Structure and ligand binding of the glutamine-II riboswitch

  Huang, L., Wang, J., Watkins, A. M., Das, R. & Lilley, D. M. J., 22 Aug 2019, In: Nucleic Acids Research. 47, 14, p. 7666-7675 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Riboswitch
  • Ligands
  • RNA
  • Binding Sites
  • Calorimetry
  140 Downloads (Pure)

• Structure and ligand binding of the SAM-V riboswitch

  Huang, L. & Lilley, D. M. J., 27 Jul 2018, In: Nucleic Acids Research. 46, 13, p. 6869-6879 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Riboswitch
  • Ligands
  • Binding Sites
  • Hydrogen Bonding
  • Static Electricity
  9 Citations (Scopus)

  133 Downloads (Pure)

• Structure-guided design of a high affinity ligand for a riboswitch

  Huang, L., Wang, J., Wilson, T. & Lilley, D., Apr 2019, In: RNA: a Publication of the RNA Society. 25, 4, p. 423-430 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Riboswitch
  • Guanidine
  • Ligands
  • diguanidine
  • X-Rays
  3 Citations (Scopus)

  154 Downloads (Pure)

• The role of RNA structure in translational regulation by L7Ae protein in archaea

  Huang, L., Ashraf, S. & Lilley, D. M. J., Jan 2019, In: RNA: a Publication of the RNA Society. 25, 1, p. 60-69 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Archaea
  • Archaeoglobus fulgidus
  • RNA
  • Untranslated Regions
  • Proteins
  5 Citations (Scopus)

  165 Downloads (Pure)

• The solution structural ensembles of RNA kink-turn motifs and their protein complexes

  Shi, X., Huang, L., Lilley, D. M. J., Harbury, P. B. & Herschlag, D., Mar 2016, In: Nature Chemical Biology. 12, 3, p. 146-152 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Amino Acid Motifs
  • Interferometry
  • RNA
  • X-Rays
  • RNA Probes
  23 Citations (Scopus)

  152 Downloads (Pure)

• The structure of the Guanidine-III Riboswitch

  Huang, L., Wang, J., Wilson, T. J. & Lilley, D. M. J., 16 Nov 2017, In: Cell Chemical Biology. 24, 11, p. 1407-1415.e2 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Riboswitch
  • Guanidine
  • Cations
  • Methylguanidine
  • Agmatine
  22 Citations (Scopus)

  171 Downloads (Pure)

• The Structure of the Guanidine-II Riboswitch

  Huang, L., Wang, J. & Lilley, D. M. J., 22 Jun 2017, In: Cell Chemical Biology. 24, 6, p. 695-702.e2 10 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

  • Riboswitch
  • Guanidine
  • Guanine
  • Methylguanidine
  • Dimerization
  24 Citations (Scopus)

  178 Downloads (Pure)
• Review article

  The Kink Turn, a Key Architectural Element in RNA Structure

  Huang, L. & Lilley, D. M. J., 27 Feb 2016, In: Journal of Molecular Biology. 428, 5, p. 790-801 12 p.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  File

  • Hydrogen
  • RNA
  • Adenine
  • Metals
  • Ions
  27 Citations (Scopus)

  124 Downloads (Pure)

• The kink-turn in the structural biology of RNA

  Huang, L. & Lilley, D. M. J., 2018, In: Quarterly Reviews of Biophysics. 51, p. 1-32 32 p., e5.

  Research output: Contribution to journal › Review article › peer-review

  • RNA
  • Metals
  • Ions
  • Base Pairing
  • Carrier Proteins
  6 Citations (Scopus)