TY - JOUR
T1 - A diagnostic unified classification model for classifying multi-sized and multi-modal brain graphs using graph alignment
AU - Yalçin, Abdullah
AU - Rekik, Islem
N1 - Funding Information:
This work was funded by generous grants from the European H2020 Marie Sklodowska-Curie action (grant no. 101003403 , http://basira-lab.com/normnets/ ) to I.R. and the Scientific and Technological Research Council of Turkey to I.R. under the TUBITAK 2232 Fellowship for Outstanding Researchers (no. 118C288 , http://basira-lab.com/reprime/ ). However, all scientific contributions made in this project are owned and approved solely by the authors.
Publisher Copyright:
© 2020 Elsevier B.V.
Copyright:
Copyright 2020 Elsevier B.V., All rights reserved.
PY - 2021/1/15
Y1 - 2021/1/15
N2 - Background: Presence of multimodal brain graphs derived from different neuroimaging modalities is inarguably one of the most critical challenges in building unified classification models that can be trained and tested on any brain graph regardless of its size and the modality it was derived from.Existing methods: One solution is to learn a model for each modality independently, which is cumbersome and becomes more time-consuming as the number of modalities increases. Another traditional solution is to build a model inputting multimodal brain graphs for the target prediction task; however, this is only applicable to datasets where all samples have joint neuro-modalitiesNew method: In this paper, we propose to build a unified brain graph classification model trained on unpaired multimodal brain graphs, which can classify any brain graph of any size. This is enabled by incorporating a graph alignment step where all multi-modal graphs of different sizes and heterogeneous distributions are mapped to a common template graph. Next, we design a graph alignment strategy to the target fixed-size template and further apply linear discriminant analysis (LDA) to the aligned graphs as a supervised dimensionality reduction technique for the target classification task.Results: We tested our method on unpaired autistic and healthy brain connectomes derived from functional and morphological MRI datasets (two modalities).Conclusion: Our results showed that our unified model method not only has great promise in solving such a challenging problem but achieves comparable performance to models trained on each modality independently.
AB - Background: Presence of multimodal brain graphs derived from different neuroimaging modalities is inarguably one of the most critical challenges in building unified classification models that can be trained and tested on any brain graph regardless of its size and the modality it was derived from.Existing methods: One solution is to learn a model for each modality independently, which is cumbersome and becomes more time-consuming as the number of modalities increases. Another traditional solution is to build a model inputting multimodal brain graphs for the target prediction task; however, this is only applicable to datasets where all samples have joint neuro-modalitiesNew method: In this paper, we propose to build a unified brain graph classification model trained on unpaired multimodal brain graphs, which can classify any brain graph of any size. This is enabled by incorporating a graph alignment step where all multi-modal graphs of different sizes and heterogeneous distributions are mapped to a common template graph. Next, we design a graph alignment strategy to the target fixed-size template and further apply linear discriminant analysis (LDA) to the aligned graphs as a supervised dimensionality reduction technique for the target classification task.Results: We tested our method on unpaired autistic and healthy brain connectomes derived from functional and morphological MRI datasets (two modalities).Conclusion: Our results showed that our unified model method not only has great promise in solving such a challenging problem but achieves comparable performance to models trained on each modality independently.
KW - Graph node embedding
KW - Linear discriminant analysis
KW - Multi-modal brain connectome classification
KW - Multi-sized brain graph alignment
KW - Neurological disorder diagnosis
UR - http://www.scopus.com/inward/record.url?scp=85097914265&partnerID=8YFLogxK
U2 - 10.1016/j.jneumeth.2020.109014
DO - 10.1016/j.jneumeth.2020.109014
M3 - Article
C2 - 33309587
AN - SCOPUS:85097914265
SN - 0165-0270
VL - 348
JO - Journal of Neuroscience Methods
JF - Journal of Neuroscience Methods
M1 - 109014
ER -