A genome-annotated bacterial collection of the plant food system microbiota

Laura Pietrantonio; Marion Devers-Lamrani; Peter Thorpe; Katie Arnton; Senga Robertson-Albertyn; Castrense  Savojardo; Alain  Hartmann; Fabrice  Martin-Laurent; James Abbott; Davide Bulgarelli

doi:10.1128/mra.01221-24

A genome-annotated bacterial collection of the plant food system microbiota

Laura Pietrantonio, Marion Devers-Lamrani, Peter Thorpe, Katie Arnton, Senga Robertson-Albertyn, Castrense Savojardo, Alain Hartmann, Fabrice Martin-Laurent, James Abbott, Davide Bulgarelli (Lead / Corresponding author)

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Abstract

This study reports draft genomes of 30 bacteria representative of the plant food system microbiota and isolated from different sources in Italy and France. Individual genomes were reconstructed using PacBIO DNA sequencing: taxonomic classification and distribution of genes involved in microbe-environment interactions are reported to facilitate strains characterisation and utilisation.

Original language	English
Article number	e01221-24
Number of pages	6
Journal	Microbiology Resource Announcements
Early online date	14 Jan 2025
DOIs	https://doi.org/10.1128/mra.01221-24
Publication status	E-pub ahead of print - 14 Jan 2025

Keywords

Food system microbiota
Rhizobia
Bacilli
whole-genome sequencing
PacBio HiFi

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10.1128/mra.01221-24Licence: CC BY

Final Published VersionFinal published version, 912 KBLicence: CC BY

Controlling mIcRobiomes CircuLations for bEtter food Systems (CIRCLES) (joint with Alma Mater Studiorum - Universita di Bologna as lead, PanepistimioThessalias, Bolton Alimentari and 26 others)
Bulgarelli, D. (Investigator)
COMMISSION OF THE EUROPEAN COMMUNITIES
1/11/18 → 31/10/24
Project: Research

Cite this

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abstract = "This study reports draft genomes of 30 bacteria representative of the plant food system microbiota and isolated from different sources in Italy and France. Individual genomes were reconstructed using PacBIO DNA sequencing: taxonomic classification and distribution of genes involved in microbe-environment interactions are reported to facilitate strains characterisation and utilisation.",

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AU - Pietrantonio, Laura

AU - Devers-Lamrani, Marion

AU - Thorpe, Peter

AU - Arnton, Katie

AU - Robertson-Albertyn, Senga

AU - Savojardo, Castrense

AU - Hartmann, Alain

AU - Martin-Laurent, Fabrice

AU - Abbott, James

AU - Bulgarelli, Davide

PY - 2025/1/14

Y1 - 2025/1/14

N2 - This study reports draft genomes of 30 bacteria representative of the plant food system microbiota and isolated from different sources in Italy and France. Individual genomes were reconstructed using PacBIO DNA sequencing: taxonomic classification and distribution of genes involved in microbe-environment interactions are reported to facilitate strains characterisation and utilisation.

AB - This study reports draft genomes of 30 bacteria representative of the plant food system microbiota and isolated from different sources in Italy and France. Individual genomes were reconstructed using PacBIO DNA sequencing: taxonomic classification and distribution of genes involved in microbe-environment interactions are reported to facilitate strains characterisation and utilisation.

KW - Food system microbiota

KW - Rhizobia

KW - Bacilli

KW - whole-genome sequencing

KW - PacBio HiFi

U2 - 10.1128/mra.01221-24

DO - 10.1128/mra.01221-24

M3 - Article

C2 - 39807940

SN - 2576-098X

JO - Microbiology Resource Announcements

JF - Microbiology Resource Announcements

M1 - e01221-24

ER -

A genome-annotated bacterial collection of the plant food system microbiota

Abstract

Keywords

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Projects

Controlling mIcRobiomes CircuLations for bEtter food Systems (CIRCLES) (joint with Alma Mater Studiorum - Universita di Bologna as lead, PanepistimioThessalias, Bolton Alimentari and 26 others)

Cite this