A genome-annotated bacterial collection of the plant food system microbiota

Laura Pietrantonio; Marion Devers-Lamrani; Peter Thorpe; Katie Arnton; Senga Robertson-Albertyn; Castrense  Savojardo; Alain  Hartmann; Fabrice  Martin-Laurent; James Abbott; Davide Bulgarelli

doi:10.1128/mra.01221-24

A genome-annotated bacterial collection of the plant food system microbiota

Laura Pietrantonio, Marion Devers-Lamrani, Peter Thorpe, Katie Arnton, Senga Robertson-Albertyn, Castrense Savojardo, Alain Hartmann, Fabrice Martin-Laurent, James Abbott, Davide Bulgarelli (Lead / Corresponding author)

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Abstract

This study reports draft genomes of 30 bacteria representative of the plant food system microbiota and isolated from different sources in Italy and France. Individual genomes were reconstructed using PacBIO DNA sequencing: taxonomic classification and distribution of genes involved in microbe-environment interactions are reported to facilitate strains characterisation and utilisation.

Original language	English
Article number	e01221-24
Number of pages	6
Journal	Microbiology Resource Announcements
Volume	14
Issue number	2
Early online date	14 Jan 2025
DOIs	https://doi.org/10.1128/mra.01221-24
Publication status	Published - Feb 2025

Keywords

Food system microbiota
Rhizobia
Bacilli
whole-genome sequencing
PacBio HiFi
rhizobia
bacilli
food system microbiota

ASJC Scopus subject areas

Molecular Biology
Immunology and Microbiology (miscellaneous)
Genetics

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10.1128/mra.01221-24Licence: CC BY

Final Published VersionFinal published version, 912 KBLicence: CC BY

Cite this

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title = "A genome-annotated bacterial collection of the plant food system microbiota",

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keywords = "Food system microbiota, Rhizobia, Bacilli, whole-genome sequencing, PacBio HiFi, rhizobia, bacilli, food system microbiota",

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AU - Savojardo, Castrense

AU - Hartmann, Alain

AU - Martin-Laurent, Fabrice

AU - Abbott, James

AU - Bulgarelli, Davide

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KW - Rhizobia

KW - Bacilli

KW - whole-genome sequencing

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A genome-annotated bacterial collection of the plant food system microbiota

Abstract

Keywords

ASJC Scopus subject areas

Access to Document

Other files and links

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Controlling mIcRobiomes CircuLations for bEtter food Systems (CIRCLES) (joint with Alma Mater Studiorum - Universita di Bologna as lead, PanepistimioThessalias, Bolton Alimentari and 26 others)

Cite this

A genome-annotated bacterial collection of the plant food system microbiota

Abstract

Keywords

ASJC Scopus subject areas

Access to Document

Other files and links

Fingerprint

Projects

Controlling mIcRobiomes CircuLations for bEtter food Systems (CIRCLES) (joint with Alma Mater Studiorum - Universita di Bologna as lead, PanepistimioThessalias, Bolton Alimentari and 26 others)

Cite this