A global view of standards for open image data formats and repositories

Jason R. Swedlow; Pasi Kankaanpää; Ugis Sarkans; Wojtek Goscinski; Graham Galloway; Leonel Malacrida; Ryan P. Sullivan; Steffen Härtel; Claire M. Brown; Christopher Wood; Antje Keppler; Federica Paina; Ben Loos; Sara Zullino; Dario Livio Longo; Silvio Aime; Shuichi Onami

doi:10.1038/s41592-021-01113-7

A global view of standards for open image data formats and repositories

Jason R. Swedlow (Lead / Corresponding author), Pasi Kankaanpää, Ugis Sarkans, Wojtek Goscinski, Graham Galloway, Leonel Malacrida, Ryan P. Sullivan, Steffen Härtel, Claire M. Brown, Christopher Wood, Antje Keppler, Federica Paina, Ben Loos, Sara Zullino, Dario Livio Longo, Silvio Aime, Shuichi Onami (Lead / Corresponding author)

Research output: Contribution to journal › Article › peer-review

35 Citations (Scopus)

89 Downloads (Pure)

Abstract

Imaging technologies are used throughout the life and biomedical sciences to understand mechanisms in biology and diagnosis and therapy in animal and human medicine. We present criteria for globally applicable guidelines for open image data tools and resources for the rapidly developing fields of biological and biomedical imaging.

Original language	English
Pages (from-to)	1440-1446
Number of pages	7
Journal	Nature Methods
Volume	18
Early online date	4 May 2021
DOIs	https://doi.org/10.1038/s41592-021-01113-7
Publication status	Published - Dec 2021

Keywords

Data publication and archiving
Research data

ASJC Scopus subject areas

Biotechnology
Biochemistry
Molecular Biology
Cell Biology

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

Access to Document

10.1038/s41592-021-01113-7

Author Accepted ManuscriptAccepted author manuscript, 230 KB

Connecting and Expanding RIKENs Systems Science of Biological Dynamics and OMEs Image Data Resource Databases (International Travel Award)
Swedlow, J. (Investigator)
Biotechnology and Biological Sciences Research Council
5/10/18 → 4/11/18
Project: Research
Global Bioimaging (GBI) (Joint with European Molecular Biology Lab, Abo Akademi, University of Turin, Institute Curie, Erasmus Uviversitair Medisch Centreum Rotterdam and Fundacio Institute de Recera Biomedica)
Swedlow, J. (Investigator)
COMMISSION OF THE EUROPEAN COMMUNITIES
1/12/15 → 30/11/18
Project: Research

Cite this

Swedlow, J. R., Kankaanpää, P., Sarkans, U., Goscinski, W., Galloway, G., Malacrida, L., Sullivan, R. P., Härtel, S., Brown, C. M., Wood, C., Keppler, A., Paina, F., Loos, B., Zullino, S., Longo, D. L., Aime, S., & Onami, S. (2021). A global view of standards for open image data formats and repositories. Nature Methods, 18, 1440-1446. https://doi.org/10.1038/s41592-021-01113-7

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title = "A global view of standards for open image data formats and repositories",

abstract = "Imaging technologies are used throughout the life and biomedical sciences to understand mechanisms in biology and diagnosis and therapy in animal and human medicine. We present criteria for globally applicable guidelines for open image data tools and resources for the rapidly developing fields of biological and biomedical imaging.",

keywords = "Data publication and archiving, Research data",

author = "Swedlow, {Jason R.} and Pasi Kankaanp{\"a}{\"a} and Ugis Sarkans and Wojtek Goscinski and Graham Galloway and Leonel Malacrida and Sullivan, {Ryan P.} and Steffen H{\"a}rtel and Brown, {Claire M.} and Christopher Wood and Antje Keppler and Federica Paina and Ben Loos and Sara Zullino and Longo, {Dario Livio} and Silvio Aime and Shuichi Onami",

note = "Funding for this research was provided by: Horizon 2020 Framework Programme (653493); Chan Zuckerberg Initiative",

year = "2021",

month = dec,

doi = "10.1038/s41592-021-01113-7",

language = "English",

volume = "18",

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T1 - A global view of standards for open image data formats and repositories

AU - Swedlow, Jason R.

AU - Kankaanpää, Pasi

AU - Sarkans, Ugis

AU - Goscinski, Wojtek

AU - Galloway, Graham

AU - Malacrida, Leonel

AU - Sullivan, Ryan P.

AU - Härtel, Steffen

AU - Brown, Claire M.

AU - Wood, Christopher

AU - Keppler, Antje

AU - Paina, Federica

AU - Loos, Ben

AU - Zullino, Sara

AU - Longo, Dario Livio

AU - Aime, Silvio

AU - Onami, Shuichi

N1 - Funding for this research was provided by: Horizon 2020 Framework Programme (653493); Chan Zuckerberg Initiative

PY - 2021/12

Y1 - 2021/12

N2 - Imaging technologies are used throughout the life and biomedical sciences to understand mechanisms in biology and diagnosis and therapy in animal and human medicine. We present criteria for globally applicable guidelines for open image data tools and resources for the rapidly developing fields of biological and biomedical imaging.

AB - Imaging technologies are used throughout the life and biomedical sciences to understand mechanisms in biology and diagnosis and therapy in animal and human medicine. We present criteria for globally applicable guidelines for open image data tools and resources for the rapidly developing fields of biological and biomedical imaging.

KW - Data publication and archiving

KW - Research data

U2 - 10.1038/s41592-021-01113-7

DO - 10.1038/s41592-021-01113-7

M3 - Article

C2 - 33948027

SN - 1548-7091

VL - 18

SP - 1440

EP - 1446

JO - Nature Methods

JF - Nature Methods

ER -

A global view of standards for open image data formats and repositories

Abstract

Keywords

ASJC Scopus subject areas

UN SDGs

Access to Document

Fingerprint

Projects

Connecting and Expanding RIKENs Systems Science of Biological Dynamics and OMEs Image Data Resource Databases (International Travel Award)

Global Bioimaging (GBI) (Joint with European Molecular Biology Lab, Abo Akademi, University of Turin, Institute Curie, Erasmus Uviversitair Medisch Centreum Rotterdam and Fundacio Institute de Recera Biomedica)

Cite this