A high resolution single molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

Runxuan Zhang

doi:10.5281/zenodo.6616513

A high resolution single molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

Runxuan Zhang

DArcy Thompson Unit

Research output: Other contribution

Abstract

This file contains the shell script, which was used to carry out the analysis in the manuscript "A high resolution single molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis"

Original language	English
Type	Workflow
Media of output	Online
Publisher	Zenodo
DOIs	https://doi.org/10.5281/zenodo.6616513
Publication status	Published - 6 Jun 2022

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

SDG 2 Zero Hunger

Keywords

alternative splicing
transcriptome
Arabidopsis
iso_seq

Access to Document

10.5281/zenodo.6616513Licence: CC BY

A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis
Zhang, R. (Lead / Corresponding author), Kuo, R., Coulter, M., Calixto, C. P. G., Entizne, J. C., Guo, W., Marquez, Y., Milne, L., Riegler, S., Matsui, A., Tanaka, M., Harvey, S., Gao, Y., Wießner-Kroh, T., Paniagua, A., Crespi, M., Denby, K., Hur, A. B., Huq, E. & Jantsch, M. & 19 others, Jarmolowski, A., Koester, T., Laubinger, S., Li, Q. Q., Gu, L., Seki, M., Staiger, D., Sunkar, R., Szweykowska-Kulinska, Z., Tu, S.-L., Wachter, A., Waugh, R., Xiong, L., Zhang, X.-N., Conesa, A., Reddy, A. S. N., Barta, A., Kalyna, M. & Brown, J. W. S., 7 Jul 2022, In: Genome Biology. 23, 37 p., 149.
Research output: Contribution to journal › Article › peer-review

Open Access
File
77 Link opens in a new tab Citations (Scopus)

210 Downloads (Pure)

Additional file 1 of A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis
Zhang, R. (Creator), Kuo, R. (Creator), Coulter, M. (Creator), Calixto, C. P. G. (Creator), Entizne, J. C. (Creator), Guo, W. (Creator), Marquez, Y. (Creator), Milne, L. (Creator), Riegler, S. (Creator), Matsui, A. (Creator), Tanaka, M. (Creator), Harvey, S. (Creator), Gao, Y. (Creator), Wießner-Kroh, T. (Creator), Paniagua, A. (Creator), Crespi, M. (Creator), Denby, K. (Creator), Hur, A. B. (Creator), Huq, E. (Creator), Jantsch, M. (Creator), Jarmolowski, A. (Creator), Koester, T. (Creator), Laubinger, S. (Creator), Li, Q. Q. (Creator), Gu, L. (Creator), Seki, M. (Creator), Staiger, D. (Creator), Sunkar, R. (Creator), Szweykowska-Kulinska, Z. (Creator), Tu, S.-L. (Creator), Wachter, A. (Creator), Waugh, R. (Creator), Xiong, L. (Creator), Zhang, X.-N. (Creator), Conesa, A. (Creator), Reddy, A. S. N. (Creator), Barta, A. (Creator), Kalyna, M. (Creator) & Brown, J. W. S. (Creator), figshare, 8 Jul 2022
DOI: 10.6084/m9.figshare.20267296
Dataset
Arabidopsis Thaliana Reference Transcript Dataset 3 (AtRTD3)
Zhang, R. (Creator), Kuo, R. I. (Creator), Coulter, M. (Creator), Calixto, C. (Creator), Entizne, J. (Creator) & Guo, W. (Creator), Information & Computational Sciences - James Hutton Institute, 21 Feb 2022
Dataset
A high resolution single molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis Accession: PRJNA755474 ID: 755474
Zhang, R. (Creator), Kuo, R. I. (Creator), Coulter, M. (Creator), Calixto, C. (Creator), Entizne, J. (Creator) & Guo, W. (Creator), National Institutes of Health, 2022
https://www.ncbi.nlm.nih.gov/bioproject/PRJNA755474
Dataset

Cite this

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title = "A high resolution single molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis",

abstract = "This file contains the shell script, which was used to carry out the analysis in the manuscript {"}A high resolution single molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis{"} ",

keywords = "alternative splicing, transcriptome, Arabidopsis, iso\_seq",

author = "Runxuan Zhang",

year = "2022",

month = jun,

day = "6",

doi = "10.5281/zenodo.6616513",

language = "English",

publisher = "Zenodo",

address = "Switzerland",

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AU - Zhang, Runxuan

PY - 2022/6/6

Y1 - 2022/6/6

N2 - This file contains the shell script, which was used to carry out the analysis in the manuscript "A high resolution single molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis"

AB - This file contains the shell script, which was used to carry out the analysis in the manuscript "A high resolution single molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis"

KW - alternative splicing

KW - transcriptome

KW - Arabidopsis

KW - iso_seq

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M3 - Other contribution

PB - Zenodo

ER -

A high resolution single molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

Abstract

UN SDGs

Keywords

Access to Document

Fingerprint

Research output

A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

Datasets

Additional file 1 of A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis

Arabidopsis Thaliana Reference Transcript Dataset 3 (AtRTD3)

A high resolution single molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis Accession: PRJNA755474 ID: 755474

Cite this