A surface endogalactanase in Bacteroides thetaiotaomicron confers keystone status for arabinogalactan degradation

Alan Cartmell, Jose Muñoz-Muñoz, Jonathon A. Briggs, Didier A. Ndeh, Elisabeth C. Lowe, Arnaud Baslé, Nicolas Terrapon, Katherine Stott, Tiaan Heunis, Joe Gray, Li Yu, Paul Dupree, Pearl Z. Fernandes, Sayali Shah, Spencer J. Williams, Aurore Labourel, Matthias Trost, Bernard Henrissat, Harry J. Gilbert (Lead / Corresponding author)

Research output: Contribution to journalArticlepeer-review

24 Citations (Scopus)

Abstract

Glycans are major nutrients for the human gut microbiota (HGM). Arabinogalactan proteins (AGPs) comprise a heterogenous group of plant glycans in which a β1,3-galactan backbone and β1,6-galactan side chains are conserved. Diversity is provided by the variable nature of the sugars that decorate the galactans. The mechanisms by which nutritionally relevant AGPs are degraded in the HGM are poorly understood. Here we explore how the HGM organism Bacteroides thetaiotaomicron metabolizes AGPs. We propose a sequential degradative model in which exo-acting glycoside hydrolase (GH) family 43 β1,3-galactanases release the side chains. These oligosaccharide side chains are depolymerized by the synergistic action of exo-acting enzymes in which catalytic interactions are dependent on whether degradation is initiated by a lyase or GH. We identified two GHs that establish two previously undiscovered GH families. The crystal structures of the exo-β1,3-galactanases identified a key specificity determinant and departure from the canonical catalytic apparatus of GH43 enzymes. Growth studies of Bacteroidetes spp. on complex AGP revealed 3 keystone organisms that facilitated utilization of the glycan by 17 recipient bacteria, which included B. thetaiotaomicron. A surface endo-β1,3-galactanase, when engineered into B. thetaiotaomicron, enabled the bacterium to utilize complex AGPs and act as a keystone organism.

Original languageEnglish
Pages (from-to)1314-1326
Number of pages13
JournalNature Microbiology
Volume3
Issue number11
Early online date22 Oct 2018
DOIs
Publication statusPublished - Nov 2018

Keywords

  • Biochemistry
  • Microbiome
  • Structural biology

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