Projects per year
Abstract
In this chapter, we introduce core functionality of the Jalview interactive platform for the creation, analysis, and publication of multiple sequence alignments. A workflow is described based on Jalview's core functions: from data import to figure generation, including import of alignment reliability scores from T-Coffee and use of Jalview from the command line. The accompanying notes provide background information on the underlying methods and discuss additional options for working with Jalview to perform multiple sequence alignment, functional site analysis, and publication of alignments on the web.
Original language | English |
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Title of host publication | Multiple Sequence Alignment |
Subtitle of host publication | Methods and Protocols |
Editors | Kazutaka Katoh |
Place of Publication | New York |
Publisher | Humana Press |
Chapter | 13 |
Pages | 203-224 |
Number of pages | 22 |
Edition | 1 |
ISBN (Electronic) | 9781071610367 |
ISBN (Print) | 9781071610350 (hbk), 9781071610381 (pbk) |
DOIs | |
Publication status | Published - 2021 |
Publication series
Name | Methods in Molecular Biology |
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Volume | 2231 |
ISSN (Print) | 1064-3745 |
ISSN (Electronic) | 1940-6029 |
Keywords
- Multiple sequence alignment visualization
- Interactive analysis
- Web application
- Desktop application
- Functional site inference
- Web services
ASJC Scopus subject areas
- Genetics
- Molecular Biology
Fingerprint
Dive into the research topics of 'Alignment of Biological Sequences with Jalview'. Together they form a unique fingerprint.Projects
- 2 Finished
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The Jalview Resource for Sequence Analysis and Annotation (Bioinformatics and Biomedical Resource Fund)
Barton, G. (Investigator) & Procter, J. (Investigator)
Biotechnology and Biological Sciences Research Council
1/10/14 → 30/09/19
Project: Research
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Extending The Jalview Resource for Biological Sequence Alignment and Analysis (Biomedical Resource application)
Barton, G. (Investigator)
1/09/14 → 28/02/21
Project: Research
Research output
- 90 Citations
- 1 Comment/debate
-
Erratum: Correction to: Alignment of Biological Sequences with Jalview (Methods in molecular biology (Clifton, N.J.) (2021) 2231 (203-224))
Procter, J. B., Carstairs, G. M., Soares, B., Mourão, K., Ofoegbu, T. C., Barton, D., Lui, L., Menard, A., Sherstnev, N., Roldan-Martinez, D., Duce, S., Martin, D. M. A. & Barton, G. J., 2021, In: Methods in Molecular Biology (Clifton, N.J.). 2231, p. C1Research output: Contribution to journal › Comment/debate › peer-review
Open AccessFile3 Citations (Scopus)131 Downloads (Pure)