TY - JOUR
T1 - An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment
AU - Szűcs, Péter
AU - Blake, Victoria C.
AU - Bhat, Prasanna R.
AU - Chao, Shiaoman
AU - Close, Timothy J.
AU - Cuesta-Marcos, Alfonso
AU - Muehlbauer, Gary J.
AU - Ramsay, Luke
AU - Waugh, Robbie
AU - Hayes, Patrick M.
N1 - Funding Information:
This work was made possible by the vision, skill, and dedication of Dr. Robert Wolfe. This research was supported by USDA‐CSREES‐NRI Grant No. 2006‐55606‐16722, “Barley Coordinated Agricultural Project: Leveraging Genomics, Genetics, and Breeding for Gene Discovery and Barley Improvement”, UK SA LINK 302 / BB/D522003/1 “Association Genetics of Elite UK Barleys”, and NSF DBI Grant No. 0321756 “Coupling EST and Bacterial Artificial Chromosome Resources to Access the Barley Genome.” We extend our sincere gratitude to all who, over the years, have contributed data to the OWB map. Special thanks to Ann Corey for curation of the OWB genetic stocks and to Tanya Filichkina for assistance in genotyping and resequencing of malting quality related genes.
Funding Information:
This work was made possible by the vision, skill, and dedication of Dr. Robert Wolfe. This research was supported by USDA-CSREES-NRI Grant No. 2006-55606-16722, “Barley Coordinated Agricultural Project: Leveraging Genomics, Genetics, and Breeding for Gene Discovery and Barley Improvement”, UK SA LINK 302 / BB/D522003/1 “Association Genetics of Elite UK Barleys”, and NSF DBI Grant No. 0321756 “Coupling EST and Bacterial Artificial Chromosome Resources to Access the Barley Genome.” We extend our sincere gratitude to all who, over the years, have contributed data to the OWB map. Special thanks to Ann Corey for curation of the OWB genetic stocks and to Tanya Filichkina for assistance in genotyping and resequencing of malting quality related genes.
Publisher Copyright:
© 2009 The Authors.
PY - 2009/7/10
Y1 - 2009/7/10
N2 - Barley (Hordeum vulgare L.) is an economically important model plant for genetics research. Barley is currently served by an increasingly comprehensive set of tools for genetic analysis that have recently been augmented by high-density genetic linkage maps built with gene-based single nucleotide polymorphisms (SNPs). These SNP-based maps need to be aligned with earlier generation maps, which were used for quantitative trait locus (QTL) detection, by integrating multiple types of markers into a single map. A 2383 locus linkage map was developed using the Oregon Wolfe Barley (OWB) Mapping Population to allow such alignments. The map is based on 1472 SNP, 722 DArT, and 189 prior markers which include morphological, simple sequence repeat (SSR), Restriction Fragment Length Polymorphism (RFLP), and sequence tagged site (STS) loci. This new OWB map forms, therefore, a useful bridge between high-density SNP-only maps and prior QTL reports. The application of this bridge concept is shown using malting-quality QTLs from multiple mapping populations, as reported in the literature. This is the first step toward developing a Barley QTL Community Curation workbook for all types of QTLs and maps, on the GrainGenes website. The OWB-related resources are available at OWB Data and GrainGenes Tools (OWB-DGGT) (http://wheat.pw.usda.gov/ggpages/maps/OWB/).
AB - Barley (Hordeum vulgare L.) is an economically important model plant for genetics research. Barley is currently served by an increasingly comprehensive set of tools for genetic analysis that have recently been augmented by high-density genetic linkage maps built with gene-based single nucleotide polymorphisms (SNPs). These SNP-based maps need to be aligned with earlier generation maps, which were used for quantitative trait locus (QTL) detection, by integrating multiple types of markers into a single map. A 2383 locus linkage map was developed using the Oregon Wolfe Barley (OWB) Mapping Population to allow such alignments. The map is based on 1472 SNP, 722 DArT, and 189 prior markers which include morphological, simple sequence repeat (SSR), Restriction Fragment Length Polymorphism (RFLP), and sequence tagged site (STS) loci. This new OWB map forms, therefore, a useful bridge between high-density SNP-only maps and prior QTL reports. The application of this bridge concept is shown using malting-quality QTLs from multiple mapping populations, as reported in the literature. This is the first step toward developing a Barley QTL Community Curation workbook for all types of QTLs and maps, on the GrainGenes website. The OWB-related resources are available at OWB Data and GrainGenes Tools (OWB-DGGT) (http://wheat.pw.usda.gov/ggpages/maps/OWB/).
UR - http://www.scopus.com/inward/record.url?scp=72449189194&partnerID=8YFLogxK
U2 - 10.3835/plantgenome2008.01.0005
DO - 10.3835/plantgenome2008.01.0005
M3 - Article
AN - SCOPUS:72449189194
SN - 1940-3372
VL - 2
SP - 134
EP - 140
JO - Plant Genome
JF - Plant Genome
IS - 2
M1 - TPG2PLANTGENOME2008010005
ER -