Analysis of plant diversity with retrotransposon-based molecular markers

R. Kalendar, A. J. Flavell, T. H. N. Ellis, T. Sjakste, C. Moisy, A. H. Schulman

    Research output: Contribution to journalReview article

    143 Citations (Scopus)

    Abstract

    Retrotransposons are both major generators of genetic diversity and tools for detecting the genomic changes associated with their activity because they create large and stable insertions in the genome. After the demonstration that retrotransposons are ubiquitous, active and abundant in plant genomes, various marker systems were developed to exploit polymorphisms in retrotransposon insertion patterns. These have found applications ranging from the mapping of genes responsible for particular traits and the management of backcrossing programs to analysis of population structure and diversity of wild species. This review provides an insight into the spectrum of retro-transposon-based marker systems developed for plant species and evaluates the contributions of retrotransposon markers to the analysis of population diversity in plants. Heredity (2011) 106, 520-530; doi:10.1038/hdy.2010.93; published online 4 August 2010

    Original languageEnglish
    Pages (from-to)520-530
    Number of pages11
    JournalHeredity
    Volume106
    Issue number4
    DOIs
    Publication statusPublished - Apr 2011

    Keywords

    • molecular marker
    • phylogeny
    • retrotransposon
    • IRAP and REMAP
    • SSAP
    • RBIP
    • TY1-COPIA GROUP RETROTRANSPOSONS
    • S-SAP MARKERS
    • EUKARYOTIC TRANSPOSABLE ELEMENTS
    • COMPARATIVE SEQUENCE-ANALYSIS
    • GYPSY-LIKE RETROTRANSPOSONS
    • AVENA-SATIVA L.
    • GENETIC DIVERSITY
    • GENOME EVOLUTION
    • BARLEY GENOME
    • LINKAGE MAP

    Cite this

    Kalendar, R., Flavell, A. J., Ellis, T. H. N., Sjakste, T., Moisy, C., & Schulman, A. H. (2011). Analysis of plant diversity with retrotransposon-based molecular markers. Heredity, 106(4), 520-530. https://doi.org/10.1038/hdy.2010.93
    Kalendar, R. ; Flavell, A. J. ; Ellis, T. H. N. ; Sjakste, T. ; Moisy, C. ; Schulman, A. H. / Analysis of plant diversity with retrotransposon-based molecular markers. In: Heredity. 2011 ; Vol. 106, No. 4. pp. 520-530.
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    abstract = "Retrotransposons are both major generators of genetic diversity and tools for detecting the genomic changes associated with their activity because they create large and stable insertions in the genome. After the demonstration that retrotransposons are ubiquitous, active and abundant in plant genomes, various marker systems were developed to exploit polymorphisms in retrotransposon insertion patterns. These have found applications ranging from the mapping of genes responsible for particular traits and the management of backcrossing programs to analysis of population structure and diversity of wild species. This review provides an insight into the spectrum of retro-transposon-based marker systems developed for plant species and evaluates the contributions of retrotransposon markers to the analysis of population diversity in plants. Heredity (2011) 106, 520-530; doi:10.1038/hdy.2010.93; published online 4 August 2010",
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    Kalendar, R, Flavell, AJ, Ellis, THN, Sjakste, T, Moisy, C & Schulman, AH 2011, 'Analysis of plant diversity with retrotransposon-based molecular markers', Heredity, vol. 106, no. 4, pp. 520-530. https://doi.org/10.1038/hdy.2010.93

    Analysis of plant diversity with retrotransposon-based molecular markers. / Kalendar, R.; Flavell, A. J.; Ellis, T. H. N.; Sjakste, T.; Moisy, C.; Schulman, A. H.

    In: Heredity, Vol. 106, No. 4, 04.2011, p. 520-530.

    Research output: Contribution to journalReview article

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    AU - Kalendar, R.

    AU - Flavell, A. J.

    AU - Ellis, T. H. N.

    AU - Sjakste, T.

    AU - Moisy, C.

    AU - Schulman, A. H.

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    AB - Retrotransposons are both major generators of genetic diversity and tools for detecting the genomic changes associated with their activity because they create large and stable insertions in the genome. After the demonstration that retrotransposons are ubiquitous, active and abundant in plant genomes, various marker systems were developed to exploit polymorphisms in retrotransposon insertion patterns. These have found applications ranging from the mapping of genes responsible for particular traits and the management of backcrossing programs to analysis of population structure and diversity of wild species. This review provides an insight into the spectrum of retro-transposon-based marker systems developed for plant species and evaluates the contributions of retrotransposon markers to the analysis of population diversity in plants. Heredity (2011) 106, 520-530; doi:10.1038/hdy.2010.93; published online 4 August 2010

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    KW - S-SAP MARKERS

    KW - EUKARYOTIC TRANSPOSABLE ELEMENTS

    KW - COMPARATIVE SEQUENCE-ANALYSIS

    KW - GYPSY-LIKE RETROTRANSPOSONS

    KW - AVENA-SATIVA L.

    KW - GENETIC DIVERSITY

    KW - GENOME EVOLUTION

    KW - BARLEY GENOME

    KW - LINKAGE MAP

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    Kalendar R, Flavell AJ, Ellis THN, Sjakste T, Moisy C, Schulman AH. Analysis of plant diversity with retrotransposon-based molecular markers. Heredity. 2011 Apr;106(4):520-530. https://doi.org/10.1038/hdy.2010.93