TY - JOUR
T1 - Deconvolution and Restoration of Optical Endomicroscopy Images
AU - Karam Eldaly, Ahmed
AU - Altmann, Yoann
AU - Perperidis, Antonios
AU - Krstajic, Nikola
AU - Choudhary, Tushar R.
AU - Dhaliwal, Kevin
AU - McLaughlin, Stephen
N1 - This work was supported by the EPSRC via grant EP/K03197X/1 and the Royal Academy of Engineering through the research fellowship scheme.
PY - 2018/3/9
Y1 - 2018/3/9
N2 - Optical endomicroscopy (OEM) is an emerging technology platform with preclinical and clinical imaging applications. Pulmonary OEM via fibre bundles has the potential to provide in vivo, in situ molecular signatures of disease such as infection and inflammation. However, enhancing the quality of data acquired by this technique for better visualization and subsequent analysis remains a challenging problem. Cross coupling between fiber cores and sparse sampling by imaging fiber bundles are the main reasons for image degradation, and poor detection performance (i.e., inflammation, bacteria, etc.). In this work, we address the problem of deconvolution and restoration of OEM data. We propose a hierarchical Bayesian model to solve this problem and compare three estimation algorithms to exploit the resulting joint posterior distribution. The first method is based on Markov chain Monte Carlo (MCMC) methods, however, it exhibits a relatively long computational time. The second and third algorithms deal with this issue and are based on a variational Bayes (VB) approach and an alternating direction method of multipliers (ADMM) algorithm respectively. Results on both synthetic and real datasets illustrate the effectiveness of the proposed methods for restoration of OEM images.
AB - Optical endomicroscopy (OEM) is an emerging technology platform with preclinical and clinical imaging applications. Pulmonary OEM via fibre bundles has the potential to provide in vivo, in situ molecular signatures of disease such as infection and inflammation. However, enhancing the quality of data acquired by this technique for better visualization and subsequent analysis remains a challenging problem. Cross coupling between fiber cores and sparse sampling by imaging fiber bundles are the main reasons for image degradation, and poor detection performance (i.e., inflammation, bacteria, etc.). In this work, we address the problem of deconvolution and restoration of OEM data. We propose a hierarchical Bayesian model to solve this problem and compare three estimation algorithms to exploit the resulting joint posterior distribution. The first method is based on Markov chain Monte Carlo (MCMC) methods, however, it exhibits a relatively long computational time. The second and third algorithms deal with this issue and are based on a variational Bayes (VB) approach and an alternating direction method of multipliers (ADMM) algorithm respectively. Results on both synthetic and real datasets illustrate the effectiveness of the proposed methods for restoration of OEM images.
KW - Optical endomicroscopy
KW - Deconvolution
KW - Image restoration
KW - Irregular sampling
KW - Bayesian models
U2 - 10.1109/TCI.2018.2811939
DO - 10.1109/TCI.2018.2811939
M3 - Article
SN - 2573-0436
VL - 4
SP - 194
EP - 205
JO - IEEE Transactions on Computational Imaging
JF - IEEE Transactions on Computational Imaging
IS - 2
ER -