Deep intronic sequence variants in COL2A1 affect the alternative splicing efficiency of Exon 2, and may confer a risk for rhegmatogenous retinal detachment

Carl Spickett, Pirro Hysi, Chistopher J. Hammond, Alan Prescott, Gregory S. Fincham, Arabella V. Poulson, Annie M. McNinch, Allan J. Richards (Lead / Corresponding author), Martin P. Snead (Lead / Corresponding author)

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Abstract

COL2A1 mutations causing haploinsufficiency of type II collagen, cause type 1 Stickler syndrome which has a high risk of retinal detachment and failure of the vitreous to develop normally. Exon 2 of COL2A1 is alternatively spliced, expressed in the eye but not in mature cartilage and encodes a region that binds growth factors TGFβ1 and BMP-2. We investigated how both an apparently de novo variant and a polymorphism in intron 2 altered the efficiency of COL2A1 exon 2 splicing and how the latter may act as a predisposing risk factor for the occurrence of posterior vitreous detachment (PVD) associated rhegmatogenous retinal detachment (RRD) in the general population. Using amplification of illegitimate transcripts and allele specific minigenes expressed in cultured cells, we demonstrate variability in exon 2 inclusion not only between different control individuals, but also between different COL2A1 alleles. We identify trans-acting factors that bind to allele specific RNA sequences, and investigate the effect of knockdown and over expression of these factors on exon 2 splicing efficiency. Finally, using a specific cohort of patients with PVD associated RRD and a control population we demonstrate a significant difference in the frequency of the COL2A1 intronic variant rs1635532 between the two groups. This article is protected by copyright. All rights reserved.

Original languageEnglish
Pages (from-to)1085-1096
Number of pages12
JournalHuman Mutation
Volume37
Issue number10
Early online date13 Jul 2016
DOIs
Publication statusPublished - 21 Aug 2016

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Alternative Splicing
Retinal Detachment
Exons
Vitreous Detachment
Alleles
Haploinsufficiency
Trans-Activators
Collagen Type I
Causality
Introns
Population
Cartilage
Cultured Cells
Intercellular Signaling Peptides and Proteins
Mutation

Cite this

Spickett, Carl ; Hysi, Pirro ; Hammond, Chistopher J. ; Prescott, Alan ; Fincham, Gregory S. ; Poulson, Arabella V. ; McNinch, Annie M. ; Richards, Allan J. ; Snead, Martin P. / Deep intronic sequence variants in COL2A1 affect the alternative splicing efficiency of Exon 2, and may confer a risk for rhegmatogenous retinal detachment. In: Human Mutation. 2016 ; Vol. 37, No. 10. pp. 1085-1096.
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abstract = "COL2A1 mutations causing haploinsufficiency of type II collagen, cause type 1 Stickler syndrome which has a high risk of retinal detachment and failure of the vitreous to develop normally. Exon 2 of COL2A1 is alternatively spliced, expressed in the eye but not in mature cartilage and encodes a region that binds growth factors TGFβ1 and BMP-2. We investigated how both an apparently de novo variant and a polymorphism in intron 2 altered the efficiency of COL2A1 exon 2 splicing and how the latter may act as a predisposing risk factor for the occurrence of posterior vitreous detachment (PVD) associated rhegmatogenous retinal detachment (RRD) in the general population. Using amplification of illegitimate transcripts and allele specific minigenes expressed in cultured cells, we demonstrate variability in exon 2 inclusion not only between different control individuals, but also between different COL2A1 alleles. We identify trans-acting factors that bind to allele specific RNA sequences, and investigate the effect of knockdown and over expression of these factors on exon 2 splicing efficiency. Finally, using a specific cohort of patients with PVD associated RRD and a control population we demonstrate a significant difference in the frequency of the COL2A1 intronic variant rs1635532 between the two groups. This article is protected by copyright. All rights reserved.",
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Deep intronic sequence variants in COL2A1 affect the alternative splicing efficiency of Exon 2, and may confer a risk for rhegmatogenous retinal detachment. / Spickett, Carl; Hysi, Pirro; Hammond, Chistopher J.; Prescott, Alan; Fincham, Gregory S.; Poulson, Arabella V.; McNinch, Annie M.; Richards, Allan J. (Lead / Corresponding author); Snead, Martin P. (Lead / Corresponding author).

In: Human Mutation, Vol. 37, No. 10, 21.08.2016, p. 1085-1096.

Research output: Contribution to journalArticle

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AU - Spickett, Carl

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N2 - COL2A1 mutations causing haploinsufficiency of type II collagen, cause type 1 Stickler syndrome which has a high risk of retinal detachment and failure of the vitreous to develop normally. Exon 2 of COL2A1 is alternatively spliced, expressed in the eye but not in mature cartilage and encodes a region that binds growth factors TGFβ1 and BMP-2. We investigated how both an apparently de novo variant and a polymorphism in intron 2 altered the efficiency of COL2A1 exon 2 splicing and how the latter may act as a predisposing risk factor for the occurrence of posterior vitreous detachment (PVD) associated rhegmatogenous retinal detachment (RRD) in the general population. Using amplification of illegitimate transcripts and allele specific minigenes expressed in cultured cells, we demonstrate variability in exon 2 inclusion not only between different control individuals, but also between different COL2A1 alleles. We identify trans-acting factors that bind to allele specific RNA sequences, and investigate the effect of knockdown and over expression of these factors on exon 2 splicing efficiency. Finally, using a specific cohort of patients with PVD associated RRD and a control population we demonstrate a significant difference in the frequency of the COL2A1 intronic variant rs1635532 between the two groups. This article is protected by copyright. All rights reserved.

AB - COL2A1 mutations causing haploinsufficiency of type II collagen, cause type 1 Stickler syndrome which has a high risk of retinal detachment and failure of the vitreous to develop normally. Exon 2 of COL2A1 is alternatively spliced, expressed in the eye but not in mature cartilage and encodes a region that binds growth factors TGFβ1 and BMP-2. We investigated how both an apparently de novo variant and a polymorphism in intron 2 altered the efficiency of COL2A1 exon 2 splicing and how the latter may act as a predisposing risk factor for the occurrence of posterior vitreous detachment (PVD) associated rhegmatogenous retinal detachment (RRD) in the general population. Using amplification of illegitimate transcripts and allele specific minigenes expressed in cultured cells, we demonstrate variability in exon 2 inclusion not only between different control individuals, but also between different COL2A1 alleles. We identify trans-acting factors that bind to allele specific RNA sequences, and investigate the effect of knockdown and over expression of these factors on exon 2 splicing efficiency. Finally, using a specific cohort of patients with PVD associated RRD and a control population we demonstrate a significant difference in the frequency of the COL2A1 intronic variant rs1635532 between the two groups. This article is protected by copyright. All rights reserved.

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