Development of the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

Eric W. Deutsch; Catherine A. Ball; G. Steven Bova; Alvis Brazma; Roger E. Bumgarner; David Campbell; Helen C. Causton; Jeff Christiansen; Duncan Davidson; Lillian J. Eichner; Young Ah Goo; Sean Grimmond; Thorsten Henrich; Michael H. Johnson; Martin Korb; Jason C. Mills; Asa Oudes; Helen E. Parkinson; Laura E. Pascal; John Quackenbush; Mirana Ramialison; Martin Ringwald; Susanna A. Sansone; Gavin Sherlock; Christian J. Stoeckert; Jason Swedlow; Ronald C. Taylor; Laura Walashek; Yi Zhou; Alvin Y. Liu; Lawrence D. True

doi:10.1089/omi.2006.10.205

Development of the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

Eric W. Deutsch (Lead / Corresponding author), Catherine A. Ball, G. Steven Bova, Alvis Brazma, Roger E. Bumgarner, David Campbell, Helen C. Causton, Jeff Christiansen, Duncan Davidson, Lillian J. Eichner, Young Ah Goo, Sean Grimmond, Thorsten Henrich, Michael H. Johnson, Martin Korb, Jason C. Mills, Asa Oudes, Helen E. Parkinson, Laura E. Pascal, John QuackenbushMirana Ramialison, Martin Ringwald, Susanna A. Sansone, Gavin Sherlock, Christian J. Stoeckert, Jason Swedlow, Ronald C. Taylor, Laura Walashek, Yi Zhou, Alvin Y. Liu, Lawrence D. True

Research output: Contribution to journal › Review article › peer-review

19 Citations (Scopus)

Abstract

We describe the creation process of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE). Modeled after the existing minimum information specification for microarray data, we created a new specification for gene expression localization experiments, initially to facilitate data sharing within a consortium. After successful use within the consortium, the specification was circulated to members of the wider biomedical research community for comment and refinement. After a period of acquiring many new suggested requirements, it was necessary to enter a final phase of excluding those requirements that were deemed inappropriate as a minimum requirement for all experiments. The full specification will soon be published as a version 1.0 proposal to the community, upon which a more full discussion must take place so that the final specification may be achieved with the involvement of the whole community.

Original language	English
Pages (from-to)	205-208
Number of pages	4
Journal	OMICS A Journal of Integrative Biology
Volume	10
Issue number	2
DOIs	https://doi.org/10.1089/omi.2006.10.205
Publication status	Published - 2006

ASJC Scopus subject areas

Biotechnology
Biochemistry
Molecular Medicine
Molecular Biology
Genetics

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Deutsch, E. W., Ball, C. A., Bova, G. S., Brazma, A., Bumgarner, R. E., Campbell, D., Causton, H. C., Christiansen, J., Davidson, D., Eichner, L. J., Goo, Y. A., Grimmond, S., Henrich, T., Johnson, M. H., Korb, M., Mills, J. C., Oudes, A., Parkinson, H. E., Pascal, L. E., ... True, L. D. (2006). Development of the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). OMICS A Journal of Integrative Biology, 10(2), 205-208. https://doi.org/10.1089/omi.2006.10.205

@article{61363004b13d4dbdba181e423ed73c5a,

title = "Development of the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)",

abstract = "We describe the creation process of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE). Modeled after the existing minimum information specification for microarray data, we created a new specification for gene expression localization experiments, initially to facilitate data sharing within a consortium. After successful use within the consortium, the specification was circulated to members of the wider biomedical research community for comment and refinement. After a period of acquiring many new suggested requirements, it was necessary to enter a final phase of excluding those requirements that were deemed inappropriate as a minimum requirement for all experiments. The full specification will soon be published as a version 1.0 proposal to the community, upon which a more full discussion must take place so that the final specification may be achieved with the involvement of the whole community.",

author = "Deutsch, {Eric W.} and Ball, {Catherine A.} and Bova, {G. Steven} and Alvis Brazma and Bumgarner, {Roger E.} and David Campbell and Causton, {Helen C.} and Jeff Christiansen and Duncan Davidson and Eichner, {Lillian J.} and Goo, {Young Ah} and Sean Grimmond and Thorsten Henrich and Johnson, {Michael H.} and Martin Korb and Mills, {Jason C.} and Asa Oudes and Parkinson, {Helen E.} and Pascal, {Laura E.} and John Quackenbush and Mirana Ramialison and Martin Ringwald and Sansone, {Susanna A.} and Gavin Sherlock and Stoeckert, {Christian J.} and Jason Swedlow and Taylor, {Ronald C.} and Laura Walashek and Yi Zhou and Liu, {Alvin Y.} and True, {Lawrence D.}",

year = "2006",

doi = "10.1089/omi.2006.10.205",

language = "English",

volume = "10",

pages = "205--208",

journal = "OMICS A Journal of Integrative Biology",

issn = "1536-2310",

publisher = "Mary Ann Liebert Inc.",

number = "2",

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Deutsch, EW, Ball, CA, Bova, GS, Brazma, A, Bumgarner, RE, Campbell, D, Causton, HC, Christiansen, J, Davidson, D, Eichner, LJ, Goo, YA, Grimmond, S, Henrich, T, Johnson, MH, Korb, M, Mills, JC, Oudes, A, Parkinson, HE, Pascal, LE, Quackenbush, J, Ramialison, M, Ringwald, M, Sansone, SA, Sherlock, G, Stoeckert, CJ, Swedlow, J, Taylor, RC, Walashek, L, Zhou, Y, Liu, AY & True, LD 2006, 'Development of the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)', OMICS A Journal of Integrative Biology, vol. 10, no. 2, pp. 205-208. https://doi.org/10.1089/omi.2006.10.205

Development of the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE). / Deutsch, Eric W. (Lead / Corresponding author); Ball, Catherine A.; Bova, G. Steven et al.
In: OMICS A Journal of Integrative Biology, Vol. 10, No. 2, 2006, p. 205-208.

Research output: Contribution to journal › Review article › peer-review

TY - JOUR

T1 - Development of the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

AU - Deutsch, Eric W.

AU - Ball, Catherine A.

AU - Bova, G. Steven

AU - Brazma, Alvis

AU - Bumgarner, Roger E.

AU - Campbell, David

AU - Causton, Helen C.

AU - Christiansen, Jeff

AU - Davidson, Duncan

AU - Eichner, Lillian J.

AU - Goo, Young Ah

AU - Grimmond, Sean

AU - Henrich, Thorsten

AU - Johnson, Michael H.

AU - Korb, Martin

AU - Mills, Jason C.

AU - Oudes, Asa

AU - Parkinson, Helen E.

AU - Pascal, Laura E.

AU - Quackenbush, John

AU - Ramialison, Mirana

AU - Ringwald, Martin

AU - Sansone, Susanna A.

AU - Sherlock, Gavin

AU - Stoeckert, Christian J.

AU - Swedlow, Jason

AU - Taylor, Ronald C.

AU - Walashek, Laura

AU - Zhou, Yi

AU - Liu, Alvin Y.

AU - True, Lawrence D.

PY - 2006

Y1 - 2006

N2 - We describe the creation process of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE). Modeled after the existing minimum information specification for microarray data, we created a new specification for gene expression localization experiments, initially to facilitate data sharing within a consortium. After successful use within the consortium, the specification was circulated to members of the wider biomedical research community for comment and refinement. After a period of acquiring many new suggested requirements, it was necessary to enter a final phase of excluding those requirements that were deemed inappropriate as a minimum requirement for all experiments. The full specification will soon be published as a version 1.0 proposal to the community, upon which a more full discussion must take place so that the final specification may be achieved with the involvement of the whole community.

AB - We describe the creation process of the Minimum Information Specification for In Situ Hybridization and Immunohistochemistry Experiments (MISFISHIE). Modeled after the existing minimum information specification for microarray data, we created a new specification for gene expression localization experiments, initially to facilitate data sharing within a consortium. After successful use within the consortium, the specification was circulated to members of the wider biomedical research community for comment and refinement. After a period of acquiring many new suggested requirements, it was necessary to enter a final phase of excluding those requirements that were deemed inappropriate as a minimum requirement for all experiments. The full specification will soon be published as a version 1.0 proposal to the community, upon which a more full discussion must take place so that the final specification may be achieved with the involvement of the whole community.

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U2 - 10.1089/omi.2006.10.205

DO - 10.1089/omi.2006.10.205

M3 - Review article

C2 - 16901227

AN - SCOPUS:33748054789

SN - 1536-2310

VL - 10

SP - 205

EP - 208

JO - OMICS A Journal of Integrative Biology

JF - OMICS A Journal of Integrative Biology

IS - 2

ER -

Development of the minimum information specification for in situ hybridization and immunohistochemistry experiments (MISFISHIE)

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