Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica)

Laura J. Grenville-Briggs; Sandeep K. Kushwaha; Michelle R. Cleary; Johanna Witzell; Eugene I. Savenkov; Stephen C. Whisson; Aakash Chawade; Ramesh R. Vetukuri

doi:10.1016/j.gdata.2017.05.010

Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica)

Laura J. Grenville-Briggs, Sandeep K. Kushwaha, Michelle R. Cleary, Johanna Witzell, Eugene I. Savenkov, Stephen C. Whisson, Aakash Chawade, Ramesh R. Vetukuri (Lead / Corresponding author)

Plant Sciences

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Abstract

Phytophthora cactorum is a broad host range phytopathogenic oomycete. P. cactorum strain LV007 was isolated from a diseased European Beech (Fagus sylvatica) in Malmö, Sweden in 2016. The draft genome of P. cactorum strain LV007 is 67.81 Mb. It contains 15,567 contigs and 21,876 predicted protein-coding genes. As reported for other phytopathogenic Phytophthora species, cytoplasmic effector proteins including RxLR and CRN families were identified. The genome sequence has been deposited at DDBJ/ENA/GenBank under the accession NBIJ00000000. The version described in this paper is version NBIJ01000000.

Original language	English
Pages (from-to)	155-156
Number of pages	2
Journal	Genomics Data
Volume	12
Early online date	12 May 2017
DOIs	https://doi.org/10.1016/j.gdata.2017.05.010
Publication status	Published - Jun 2017

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© 2017 The Authors. Published by Elsevier Inc. This is an open access article under the CC BY license (http://creativecommons.org/licenses/BY/4.0/).
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title = "Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica)",

abstract = "Phytophthora cactorum is a broad host range phytopathogenic oomycete. P. cactorum strain LV007 was isolated from a diseased European Beech (Fagus sylvatica) in Malm{\"o}, Sweden in 2016. The draft genome of P. cactorum strain LV007 is 67.81 Mb. It contains 15,567 contigs and 21,876 predicted protein-coding genes. As reported for other phytopathogenic Phytophthora species, cytoplasmic effector proteins including RxLR and CRN families were identified. The genome sequence has been deposited at DDBJ/ENA/GenBank under the accession NBIJ00000000. The version described in this paper is version NBIJ01000000.",

keywords = "Journal article",

author = "Grenville-Briggs, {Laura J.} and Kushwaha, {Sandeep K.} and Cleary, {Michelle R.} and Johanna Witzell and Savenkov, {Eugene I.} and Whisson, {Stephen C.} and Aakash Chawade and Vetukuri, {Ramesh R.}",

note = "This work is supported by research funds from Swedish Research Council Formas (2014-430), the Swedish Foundation for Strategic Research (FFL5), Helge Ax:son Johnsons Stiftelse, Nordic Joint Committee for Agricultural and Food Research (NKJ), Nordic Forest Research (SNS) and the Swedish University of Agricultural Sciences, Plant Breeding Platform.",

year = "2017",

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doi = "10.1016/j.gdata.2017.05.010",

language = "English",

volume = "12",

pages = "155--156",

journal = "Genomics Data",

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AU - Grenville-Briggs, Laura J.

AU - Kushwaha, Sandeep K.

AU - Cleary, Michelle R.

AU - Witzell, Johanna

AU - Savenkov, Eugene I.

AU - Whisson, Stephen C.

AU - Chawade, Aakash

AU - Vetukuri, Ramesh R.

N1 - This work is supported by research funds from Swedish Research Council Formas (2014-430), the Swedish Foundation for Strategic Research (FFL5), Helge Ax:son Johnsons Stiftelse, Nordic Joint Committee for Agricultural and Food Research (NKJ), Nordic Forest Research (SNS) and the Swedish University of Agricultural Sciences, Plant Breeding Platform.

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N2 - Phytophthora cactorum is a broad host range phytopathogenic oomycete. P. cactorum strain LV007 was isolated from a diseased European Beech (Fagus sylvatica) in Malmö, Sweden in 2016. The draft genome of P. cactorum strain LV007 is 67.81 Mb. It contains 15,567 contigs and 21,876 predicted protein-coding genes. As reported for other phytopathogenic Phytophthora species, cytoplasmic effector proteins including RxLR and CRN families were identified. The genome sequence has been deposited at DDBJ/ENA/GenBank under the accession NBIJ00000000. The version described in this paper is version NBIJ01000000.

AB - Phytophthora cactorum is a broad host range phytopathogenic oomycete. P. cactorum strain LV007 was isolated from a diseased European Beech (Fagus sylvatica) in Malmö, Sweden in 2016. The draft genome of P. cactorum strain LV007 is 67.81 Mb. It contains 15,567 contigs and 21,876 predicted protein-coding genes. As reported for other phytopathogenic Phytophthora species, cytoplasmic effector proteins including RxLR and CRN families were identified. The genome sequence has been deposited at DDBJ/ENA/GenBank under the accession NBIJ00000000. The version described in this paper is version NBIJ01000000.

KW - Journal article

U2 - 10.1016/j.gdata.2017.05.010

DO - 10.1016/j.gdata.2017.05.010

M3 - Article

C2 - 28560165

SN - 2213-5960

VL - 12

SP - 155

EP - 156

JO - Genomics Data

JF - Genomics Data

ER -

Draft genome of the oomycete pathogen Phytophthora cactorum strain LV007 isolated from European beech (Fagus sylvatica)

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