Arabidopsis nucleolar protein database (AtNoPDB)

John W. S. Brown; Peter J. Shaw; Paul Shaw; David F. Marshall

doi:10.1093/nar/gki052

Arabidopsis nucleolar protein database (AtNoPDB)

John W. S. Brown, Peter J. Shaw, Paul Shaw, David F. Marshall

Research output: Contribution to journal › Article › peer-review

65 Citations (Scopus)

Abstract

The Arabidopsis Nucleolar Protein Database (http://bioinf.scri.sari.ac.uk/cgi-bin/atnopdb/home) provides information on 217 proteins identified in a proteomic analysis of nucleoli isolated from Arabidopsis cell culture. The database is organized on the basis of the Arabidopsis gene identifier number. The information provided includes protein description, protein class, whether or not the plant protein has a homologue in the most recent human nucleolar proteome and the results of reciprocal BLAST analysis of the human proteome. In addition, for one-third of the 217 Arabidopsis nucleolar proteins, localization images are available from analysis of full-length cDNA-green fluorescent protein (GFP) fusions and the strength of signal in different parts of the cell-nucleolus, nucleolus-associated structures, nucleoplasm, nuclear bodies and extra-nuclear-is provided. For each protein, the most likely human and yeast orthologues, where identifiable through BLASTX analysis, are given with links to relevant information sources.

Original language	English
Pages (from-to)	D633-D636
Number of pages	4
Journal	Nucleic Acids Research
Volume	33
Issue number	S1
DOIs	https://doi.org/10.1093/nar/gki052
Publication status	Published - 2005

Access to Document

10.1093/nar/gki052

Cite this

@article{6022682ee5a24c39b37a127e882adca1,

title = "Arabidopsis nucleolar protein database (AtNoPDB)",

abstract = "The Arabidopsis Nucleolar Protein Database (http://bioinf.scri.sari.ac.uk/cgi-bin/atnopdb/home) provides information on 217 proteins identified in a proteomic analysis of nucleoli isolated from Arabidopsis cell culture. The database is organized on the basis of the Arabidopsis gene identifier number. The information provided includes protein description, protein class, whether or not the plant protein has a homologue in the most recent human nucleolar proteome and the results of reciprocal BLAST analysis of the human proteome. In addition, for one-third of the 217 Arabidopsis nucleolar proteins, localization images are available from analysis of full-length cDNA-green fluorescent protein (GFP) fusions and the strength of signal in different parts of the cell-nucleolus, nucleolus-associated structures, nucleoplasm, nuclear bodies and extra-nuclear-is provided. For each protein, the most likely human and yeast orthologues, where identifiable through BLASTX analysis, are given with links to relevant information sources.",

author = "Brown, {John W. S.} and Shaw, {Peter J.} and Paul Shaw and Marshall, {David F.}",

year = "2005",

doi = "10.1093/nar/gki052",

language = "English",

volume = "33",

pages = "D633--D636",

journal = "Nucleic Acids Research",

issn = "1362-4962",

publisher = "Oxford University Press",

number = "S1",

}

TY - JOUR

T1 - Arabidopsis nucleolar protein database (AtNoPDB)

AU - Brown, John W. S.

AU - Shaw, Peter J.

AU - Shaw, Paul

AU - Marshall, David F.

PY - 2005

Y1 - 2005

N2 - The Arabidopsis Nucleolar Protein Database (http://bioinf.scri.sari.ac.uk/cgi-bin/atnopdb/home) provides information on 217 proteins identified in a proteomic analysis of nucleoli isolated from Arabidopsis cell culture. The database is organized on the basis of the Arabidopsis gene identifier number. The information provided includes protein description, protein class, whether or not the plant protein has a homologue in the most recent human nucleolar proteome and the results of reciprocal BLAST analysis of the human proteome. In addition, for one-third of the 217 Arabidopsis nucleolar proteins, localization images are available from analysis of full-length cDNA-green fluorescent protein (GFP) fusions and the strength of signal in different parts of the cell-nucleolus, nucleolus-associated structures, nucleoplasm, nuclear bodies and extra-nuclear-is provided. For each protein, the most likely human and yeast orthologues, where identifiable through BLASTX analysis, are given with links to relevant information sources.

AB - The Arabidopsis Nucleolar Protein Database (http://bioinf.scri.sari.ac.uk/cgi-bin/atnopdb/home) provides information on 217 proteins identified in a proteomic analysis of nucleoli isolated from Arabidopsis cell culture. The database is organized on the basis of the Arabidopsis gene identifier number. The information provided includes protein description, protein class, whether or not the plant protein has a homologue in the most recent human nucleolar proteome and the results of reciprocal BLAST analysis of the human proteome. In addition, for one-third of the 217 Arabidopsis nucleolar proteins, localization images are available from analysis of full-length cDNA-green fluorescent protein (GFP) fusions and the strength of signal in different parts of the cell-nucleolus, nucleolus-associated structures, nucleoplasm, nuclear bodies and extra-nuclear-is provided. For each protein, the most likely human and yeast orthologues, where identifiable through BLASTX analysis, are given with links to relevant information sources.

U2 - 10.1093/nar/gki052

DO - 10.1093/nar/gki052

M3 - Article

C2 - 15608277

SN - 1362-4962

VL - 33

SP - D633-D636

JO - Nucleic Acids Research

JF - Nucleic Acids Research

IS - S1

ER -

Arabidopsis nucleolar protein database (AtNoPDB)

Abstract

Access to Document

Fingerprint

Cite this