Escherichia coli O157:H7 transcriptome datasets for comparison of RNA-seq and microarray platforms

Ewa Grabowiecka, David Martin, Louise Crozier, Nicola Holden (Lead / Corresponding author)

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Abstract

Whole transcriptome analysis to investigate differential gene expression and regulatory adaption can be carried out on two different technological platforms: by probe hybridisation to microarrays or by RNAseq for deep sequencing. Since there are difference in terms of their genome coverage, sensitivity and cost, there is a requirement for robust comparisons to determine the platform of choice. Here, we present datasets for the whole transcriptional response verocytoxigenic Escherichia coli (VTEC) obtained from RNA-seq and microarray platforms in response to spinach, together with a comparison between the datasets (available at Array Express: E-MTAB-3249, E-MTAB-4120, E-MTAB-7441).

Original languageEnglish
Pages (from-to)126-131
Number of pages6
JournalData in Brief
Volume22
Early online date30 Nov 2018
DOIs
Publication statusPublished - Feb 2019

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Escherichia coli O157
Transcriptome
RNA
High-Throughput Nucleotide Sequencing
Spinacia oleracea
Gene Expression Profiling
Genome
Escherichia coli
Gene Expression
Costs and Cost Analysis
Datasets

Cite this

Grabowiecka, Ewa ; Martin, David ; Crozier, Louise ; Holden, Nicola. / Escherichia coli O157:H7 transcriptome datasets for comparison of RNA-seq and microarray platforms. In: Data in Brief. 2019 ; Vol. 22. pp. 126-131.
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Escherichia coli O157:H7 transcriptome datasets for comparison of RNA-seq and microarray platforms. / Grabowiecka, Ewa; Martin, David; Crozier, Louise; Holden, Nicola (Lead / Corresponding author).

In: Data in Brief, Vol. 22, 02.2019, p. 126-131.

Research output: Contribution to journalArticle

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