Flapjack-graphical genotype visualization

Iain Milne; Paul Shaw; Gordon Stephen; Micha Bayer; Linda Cardle; William T. B. Thomas; Andrew J. Flavell; David Marshall

doi:10.1093/bioinformatics/btq580

Flapjack-graphical genotype visualization

Iain Milne, Paul Shaw, Gordon Stephen, Micha Bayer, Linda Cardle, William T. B. Thomas, Andrew J. Flavell, David Marshall

Research output: Contribution to journal › Article › peer-review

158 Citations (Scopus)

Abstract

New software tools for graphical genotyping are required that can routinely handle the large data volumes generated by the high-throughput single-nucleotide polymorphism ( SNP) platforms, genotyping-by-sequencing and other comparable genotyping technologies. Flapjack has been developed to facilitate analysis of these data, providing real time rendering with rapid navigation and comparisons between lines, markers and chromosomes, with visualization, sorting and querying based on associated data, such as phenotypes, quantitative trait loci or other mappable features.

Original language	English
Pages (from-to)	3133-3134
Number of pages	2
Journal	Bioinformatics
Volume	26
Issue number	24
DOIs	https://doi.org/10.1093/bioinformatics/btq580
Publication status	Published - 15 Dec 2010

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title = "Flapjack-graphical genotype visualization",

abstract = "New software tools for graphical genotyping are required that can routinely handle the large data volumes generated by the high-throughput single-nucleotide polymorphism ( SNP) platforms, genotyping-by-sequencing and other comparable genotyping technologies. Flapjack has been developed to facilitate analysis of these data, providing real time rendering with rapid navigation and comparisons between lines, markers and chromosomes, with visualization, sorting and querying based on associated data, such as phenotypes, quantitative trait loci or other mappable features.",

author = "Iain Milne and Paul Shaw and Gordon Stephen and Micha Bayer and Linda Cardle and Thomas, {William T. B.} and Flavell, {Andrew J.} and David Marshall",

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AU - Milne, Iain

AU - Shaw, Paul

AU - Stephen, Gordon

AU - Bayer, Micha

AU - Cardle, Linda

AU - Thomas, William T. B.

AU - Flavell, Andrew J.

AU - Marshall, David

PY - 2010/12/15

Y1 - 2010/12/15

N2 - New software tools for graphical genotyping are required that can routinely handle the large data volumes generated by the high-throughput single-nucleotide polymorphism ( SNP) platforms, genotyping-by-sequencing and other comparable genotyping technologies. Flapjack has been developed to facilitate analysis of these data, providing real time rendering with rapid navigation and comparisons between lines, markers and chromosomes, with visualization, sorting and querying based on associated data, such as phenotypes, quantitative trait loci or other mappable features.

AB - New software tools for graphical genotyping are required that can routinely handle the large data volumes generated by the high-throughput single-nucleotide polymorphism ( SNP) platforms, genotyping-by-sequencing and other comparable genotyping technologies. Flapjack has been developed to facilitate analysis of these data, providing real time rendering with rapid navigation and comparisons between lines, markers and chromosomes, with visualization, sorting and querying based on associated data, such as phenotypes, quantitative trait loci or other mappable features.

U2 - 10.1093/bioinformatics/btq580

DO - 10.1093/bioinformatics/btq580

M3 - Article

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SN - 1367-4803

VL - 26

SP - 3133

EP - 3134

JO - Bioinformatics

JF - Bioinformatics

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ER -

Flapjack-graphical genotype visualization

Abstract

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